LOC110524141 (LOC106613631)


Basic Information

Item Value
gene id LOC110524141
gene name LOC106613631
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58163918 ~ 58187049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603504.2
CTGTCAGTCATATGACGTTAGTGTTTCTGCAGGTGCTTGACGCGGTGGTGTGTTGCGTAATAGGAGCAGAAAATACACTTAAAGATGGCTTCAGCTACAGCTACCTATGGACAGAAGGAGTCCTCAGACCAGAACTTTGACTACATGTTCAAGATCCTCATCATTGGAAACAGCAGTGTGGGCAAGACCAGCTTCCTGTTCCGCTACGCAGATGACTCTTTTACGCCCGCCTTCGTCAGCACGGTGGGCATCGACTTCAAGGTGAAGACCATCTACAGGAACGACAAGAGGATCAAGTTACAGATCTGGGATACGGCAGGGCAGGAGAGATACAGGACTATCACCACGGCTTACTACCGCGGTGCCATGGGCTTCATCCTCATGTATGACATCACCAATGAGGAGTCCTTTAATGCTGTGCAGGACTGGTCGACCCAGATTAAGACGTACTCGTGGGACAACGCCCAGGTCCTGCTAGTAGGCAACAAGTGTGACATGGAGGACGAAAGGGTGGTGGCAGGAGACAGGGGCAGGCAGCTTTCTGAACACATGGGGTTCGAGTTCTTTGAGGCCAGTGCCAAAGATAACATCAATGTGAAACAGACGTTCGAGCGGCTGGTGGACATAATCTGCGAAAAGATGTCTGAGAGCTTGGATGCCGCTGACCCGGCAGTTACAGGGGCTAAACAGGGGCCCCAGCTCACCGAGCAGCCCGCACCCCCCCAACAGGACTGTGCATGCTAAAGCTGAGcgaaccccccacacacaccatcaacTCATCCTCAGGTCCCCTCACACCTGTTTCCTTTACTCGGGTCCTCACTGGTCTTAAATTCTCTATCCAGAGTCTGCCCCAAATCTTCATCATTGTTTACCTTATTTTCTCAGACTAATGGTTTTCTGATAAAAGCCTTTGTTAGAGACGGATGGAATTCCATATTAAAGTATGTGTTGTCATAAAGAGGTCAATACTTTGGAAACAGAGATATTCAAGCCGAGTGCAAATATACTGTCTAAGTCCCCTGTCTGTGTGAAATACAAGAAAACATATATTGGATTGCATCAGTCACTGGTATAACATAATTTCCTGTCTCAAATTTTTGTCCAATCAGCCTTTTGTTTTATGTACCTTATGTTTTGTATACTGGTACCACTTTCCTTTGTAAAGCTTTTCGCGTATAAAAAAAACAGTAAGGAAAATACAAACAAATTATAGAGAGGTAAAAAGAAACAGAGACATtctttatacagtaccagtcaaaagtttggacacacctactcattccagggtttttctttattttttactattttctacattgtagaataatagtgaagacttaaactatgaaataacaactatgga

Function

NR:

description
ras-related protein Rab-3A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07882 RAB3A; Ras-related protein Rab-3A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603504.2 True 1366 mRNA 0.45 5 58163918 58187049

Neighbor

gene id symbol gene type direction distance location
pgpi pgpi coding downstream 43879 58115798 ~ 58120039 (-)
LOC110524138 LOC106613627 coding downstream 54473 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 82043 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 149258 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 165478 57989745 ~ 57998440 (-)
LOC118964716 LOC106613467 coding upstream 190509 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 192731 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 229823 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 359335 58546384 ~ 58567683 (-)
LOC110524152 LOC100194657 coding upstream 386209 58573258 ~ 58578611 (-)
G420254 NA non-coding downstream 9115 58154580 ~ 58154803 (-)
G420248 NA non-coding downstream 18762 58144488 ~ 58145156 (-)
G420243 NA non-coding downstream 28062 58135356 ~ 58135856 (-)
G420236 NA non-coding downstream 52344 58109657 ~ 58111574 (-)
G420313 NA non-coding upstream 64589 58251638 ~ 58251915 (-)
G420314 NA non-coding upstream 66153 58253202 ~ 58253429 (-)
G420315 NA non-coding upstream 66501 58253550 ~ 58253764 (-)
G420316 NA non-coding upstream 67282 58254331 ~ 58254556 (-)
G420320 NA non-coding upstream 72572 58259621 ~ 58259877 (-)
G420193 NA other downstream 49858 58112387 ~ 58114060 (-)
G419714 NA other downstream 457982 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 537744 57612040 ~ 57627128 (-)
G419603 NA other downstream 552351 57611059 ~ 57611567 (-)
G418830 NA other downstream 1329323 56834026 ~ 56834595 (-)
G420421 NA other upstream 226079 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 839054 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 945821 59131152 ~ 59138429 (-)
G422347 NA other upstream 1913716 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2871945 61058949 ~ 61081864 (-)

Expression


Co-expression Network