LOC118964716 (LOC106613467)


Basic Information

Item Value
gene id LOC118964716
gene name LOC106613467
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58377558 ~ 58380045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118964716
ATGACGTTTGCACCTGTTCAGAAGCAGTGTCTAGAGCTCAATGCCACCAGGCCCAACTTGGCGGTACCCCGAGTGTAGGTGACCCTGTACTATGAGAGCTTGTGTCCAGGCTGCAGGGCCTTCCTCACCCAGCAGCTCTTCCCCACCTGGGCCATGCTCCACGACATCATGGACGTCAAATCGGTGCCCTACGGCAATGCACAGCTTCCCTCAGGGATTTCTCCCTTCACCTTTCAACATGGAGAACCAGAGTGTCATGGTAACATGATTGAGGCATGTTTTCTACATTCAGTGGGTCGGTACTCAGCATTCCCAGTCATTTACTGCATGGAATCTGCAGCTAACGTTCTTGATGCTGCCCAACCTTGCTTACAGCTGCACGTCCCCTCCATGATGTGGGACAGTGTAACGTCCTGTGAGTAGGGAGAGCTCGGCTTCAAACTGATGCATGAGAACGCCCTGAAGACCAAAGCTCTCAGTCCGGCAAAAACACACGTCCCCTGGGTGACTATTAATGGGGAATACACGGATGACTTTCAGGACAAAGCAATATCTTCGCTTTTCAACTTGATCTGCAAAATGTACAAGGTGAGTAAGCCCCCTGCCTGTACTGGGGCACAGAAGAAACTAGACACGCGTTTGTACTGA

Function

NR:

description
PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118964716 True 648 mRNA 0.52 7 58377558 58380045

Neighbor

gene id symbol gene type direction distance location
LOC110524141 LOC106613631 coding downstream 190509 58163918 ~ 58187049 (-)
pgpi pgpi coding downstream 257519 58115798 ~ 58120039 (-)
LOC110524138 LOC106613627 coding downstream 268113 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 295683 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 362898 58002584 ~ 58014660 (-)
mast3b LOC106613636 coding upstream 36827 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 166339 58546384 ~ 58567683 (-)
LOC110524152 LOC100194657 coding upstream 193213 58573258 ~ 58578611 (-)
LOC110524158 LOC106613645 coding upstream 291426 58671471 ~ 58675928 (-)
LOC110524167 LOC106613995 coding upstream 454217 58834262 ~ 58836111 (-)
G420369 NA non-coding downstream 3524 58373159 ~ 58374034 (-)
G420368 NA non-coding downstream 7548 58368907 ~ 58370010 (-)
G420370 NA non-coding downstream 8865 58367276 ~ 58368693 (-)
G420341 NA non-coding downstream 89252 58288070 ~ 58288306 (-)
G420339 NA non-coding downstream 90741 58286493 ~ 58286817 (-)
LOC110524144 LOC106613635 non-coding upstream 1313 58379780 ~ 58409320 (-)
G420429 NA non-coding upstream 20514 58400559 ~ 58400767 (-)
G420420 NA non-coding upstream 31288 58411333 ~ 58413009 (-)
G420422 NA non-coding upstream 34436 58414481 ~ 58415479 (-)
G420437 NA non-coding upstream 40041 58420086 ~ 58420474 (-)
G420193 NA other downstream 263498 58112387 ~ 58114060 (-)
G419714 NA other downstream 671622 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 751384 57612040 ~ 57627128 (-)
G419603 NA other downstream 765991 57611059 ~ 57611567 (-)
G418830 NA other downstream 1542963 56834026 ~ 56834595 (-)
G420421 NA other upstream 33083 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 646058 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 752825 59131152 ~ 59138429 (-)
G422347 NA other upstream 1720720 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2678949 61058949 ~ 61081864 (-)

Expression


Co-expression Network