LOC118964627


Basic Information

Item Value
gene id LOC118964627
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58401429 ~ 58404889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051769.1
TGTTGTGTTGTAATTTGAATCGCAGATATATTTCCATTCTATGTTTGAGTTGCATAAATACTTTAGGATCAGAAAGAGCGAGCTGCAAAGCGACAGTTACCTGCTCCTGCCACAAGCCTTGCCCCTGTCCAATggatagagagggacagaagaggcAACATAATTCCCCAGAGACCTGGACTAAGAAGGCTTCAAGCCATGTTTCCAGTACCAGTACCCATCCTCCTGCAGTACCATGCTCCTGCACCTATCCCCACAAGATTCAGACTCCCTGATGCAGGACCTACAGGAGCTGATGGGGAGTTTCATGGGGCCAGATTGTCACGTAACCCCAAAGGTGACTTGGGCAGAGAGGCAGACACAAGTTGGGGGAAAGGATTGAGGCAATGGTGGACAGCATGCTCTCTGCTGAAGGTACTGTGTTGGGCCAGTGTCAGTATTGAAACAGTGAGGATAGCCTGTCCAGGCATCGTCTCTGTGCCGCATGTGACATAGCCACCCATAGCACCAAGGTTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051769.1 True 517 mRNA 0.50 3 58401429 58404889

Neighbor

gene id symbol gene type direction distance location
LOC110524143 LOC106573897 coding upstream 31339 58312332 ~ 58370090 (+)
LOC110524142 NA coding upstream 196059 58199387 ~ 58205370 (+)
LOC110524140 LOC106613630 coding upstream 241295 58158521 ~ 58160134 (+)
LOC110524139 lsm4 coding upstream 277031 58120065 ~ 58124398 (+)
LOC110522977 NA coding upstream 315160 58084721 ~ 58086269 (+)
LOC118964530 NA coding downstream 76048 58480937 ~ 58482309 (+)
LOC110524147 LOC106613637 coding downstream 79154 58484043 ~ 58493673 (+)
LOC110524149 LOC106613638 coding downstream 95216 58500105 ~ 58505933 (+)
LOC110524150 LOC106613639 coding downstream 108040 58512929 ~ 58539436 (+)
LOC110524154 NA coding downstream 174653 58579542 ~ 58620188 (+)
G420101 LOC106613635 non-coding upstream 11560 58389485 ~ 58389869 (+)
G420093 NA non-coding upstream 21124 58379916 ~ 58380305 (+)
G420025 NA non-coding upstream 27438 58373120 ~ 58373991 (+)
G420062 NA non-coding upstream 132003 58269119 ~ 58269426 (+)
G420055 NA non-coding upstream 154891 58245990 ~ 58246538 (+)
G420117 LOC100846954 non-coding downstream 6351 58411240 ~ 58418268 (+)
G420118 LOC106613636 non-coding downstream 13475 58418364 ~ 58418789 (+)
G420119 NA non-coding downstream 15531 58420420 ~ 58420673 (+)
G420120 NA non-coding downstream 16137 58421026 ~ 58421360 (+)
G420122 NA non-coding downstream 18211 58423100 ~ 58423510 (+)
G419452 NA other upstream 501781 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1034092 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1443264 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1476253 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 1671608 56726185 ~ 56729821 (+)
G420634 NA other downstream 537839 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2289368 60694220 ~ 60695905 (+)
G423922 NA other downstream 3316648 61721537 ~ 61722024 (+)
G424079 NA other downstream 3700634 62105523 ~ 62105872 (+)

Expression


Co-expression Network