LOC110524147 (LOC106613637)


Basic Information

Item Value
gene id LOC110524147
gene name LOC106613637
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58484043 ~ 58493673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977960.1
TTGTGGTTTGTGGTGTAGAGACAACATGTTCTGCCCTTTTATCTGAGAAAGAACAAGAGCATGCAGACATTTTTCGCCCCCAACAGTGTCATTTACGAGAAGCGTAACTGAAACAGATTTGAGGAGCTGTCGACGGCTGCATGGAACTGTGTTAACAGTCTAGCAAACCCAAGTCTCTTTGGTCAAACGCAGGCTGATCAACCCTGGATTGTCACCTGTTTGGAGACTTTACACACTAACTCCGTCAAGGGGTTGTCGAGGTGATGGAGACAAAGGAACACTGGTTCTTGCAAGGATTTCTGCTTCTTGCTATGGTAATAGCTCAAGGGGCAACTATTAAATGTCCTTCTAGTCCTCTGTGCTACAAGAAAACTGAAAGTGCCACCATCTATACATGTGAATGGGAGACATCTGAATCTATGAAGAATGCAACTTATGAGCTTTTTTACAGCCGCTCCAATTCCGCTGCAAGTAGAACATCGTTGGGCAGTAGTAGGAAGAGCTATATCTGTGTGCAAGACAATACAGTGCTCAACAAAGTGTTGGTGGATATATGGGTGGTCGCTTACATGGGCAACGGGAGCTGCCAGTCACTCAATACCACTGTTACACTTTCTGAAAGAGTTAAGTATGAAGCTCCCCAACGTATGTCTATGGCAAGATCCTCGAGAAATCTTACCCTCAGCTGGGATAACAAGAAAGATGCTGTCATAGAGGTCAAGTTCAGAAGACTAGAGGAAACCTCAGGGACATGGAAGACACTTAAGAAAGAAGTCAAACAAGCCATGGTCACTCTGGAGAATTTCCAGAACGAATCTGTGTACCAACTACAGGTCAGACAAATGTCCAAGCATGTCAAACATCCCCTGTGGAGCGACTGGACTCCAATCCTGGACGTTCCCACTGAAATCTCAAATCCCCCAGAAGTTAACTGGACAGTAGAGGATTTTAACAATGGTACTCGACTACTCAAGCTGACTTGGGGTACACCACCTTATCCAGTCTCTATGCAGGTGAATTACAACCTGTCTCTCCATATTTGGCCATGCCTACTAAAGCGAAAGAACTTCACCATTGTCACTTCCACTGAGTTCAGTGTTTATGTGACTTACTCTGCTGTCAGTGGTGACATTATTGCCTTTAATAAAGTGGGAAAGTCATCCCCGACACATATCCTTGTCCCAGCAAAACATCTTACATTTCCCTGcaagtCTTGGCCTAATGACAGACTCATCCCACTCAAGTATGCGCATGGCTTTATGAAATCCTGCCTGGAGTGGTACAAGTCAACAGACGGAGAAACGCGACCAGAAAAAGTGAATAGATCAAAACTAAATGGAACCGTGAAGAAAAAACTAAAACACGTCAGAGAAAAGATGGACGACTATGTACGGTACTATTACCTCGTTCACAAACAAACTGATGGAAAGCCACAATCAACAGAGACGTGTCTCATGTATAAAAAGGAGGGTGCACCCAGTAAGGCACCTGATCATTTCACTGCTCCTATTCTTAATGTTACAACCAATTCTGCAATGCTGCATTGGAAACCTATTCCTGTGCCAGACCAGCGAGGTTTCCTTACACACTATGAAGTCTGCTACACAAGGAGAAGCCAAAAAAATGAGTCACAAATTGAATCTGAGTGTCTCAAGAGCTTTGCATCAaaaacagagaatcttgttcaaAACCTGACACCTGGGTCCATCTACAACATCCATCTCGCTGGAGCAACAGCTGCAGGTTCAGGACCAACGACAACTATCCAAATCATGACAAAGCCTCTACCCCAGTCCGTTATTGGTTGGATCATAGCTGGCATAATTGTTTCAATTGCAATATTAATAACAGTATGCTTGTTCATCATCCAGAGatataaaaaaaatatcttcCCACCAATACCACGTCCTGTGGTCGTAGAGTCGGTGAATTACCGAGCAAGGAATCAGAGTATGCATGAGGAGGAGGTGCATGAGCTGCAGCTATATGACAACTGCAGCCAAGACCCCAACCCTGAGGAAGCCACTGTCCTGGAGGTGTCTGAGACATACGAGTGTGAAGACACGGACGAGAAGTGCCTGGGAGACTCCAGCACCCCAGTCAGTGACCTGCTGAGCCCTGATTATAAGGCCCAGGTGCTACGTCTAGAAACCCCTGATTCAAGCCAAGGAGAGATTGACTGTTTGGTCACCATGTTGATGTACAGGAACGGTCTGGTCTTTGATATGAAAGCATACTCCACCGAGGATGTCGGGATCCCACTTTAGACATCACTGCTGTAGCACTCGCTCGAAGCCTGTAATTATAATATATGACCCCCTTATTATGGTGTATTGTCACTTTCTATTGGTCCTGACTAAATAACAGCCATCTTGAGTCAGTTGAGAGAATGGACATGTTATAAGCCTTATAATAATGCATTATAAAGGCTTATTCTTGTTTCTAACAAGTTATAAAGCGTATCTGCATCCTTTAAGTAAAGTGTTAGGCAACACTGCCAGAGAGTGGTGACAGTGGCCTGGCTGGGCCATTTGGCACTTTGTCTGTTCAAATATTCAGGCTAGTTCATTAACagataattattatattattgtggACATTAAAATATGTTTAAACACTGTAGATATAAATAATACTGAAAAAGTTTGCATTGATGTATTTCTTTAAAATATTTGATTCAACTTATTTTCTTGACAATAAGCAAAAACAGACAACTTCATTTACATACATTTCCACAAACATTAGTGGCATCACACTTGCCCAGACCCACATGTTCCCACACAAACAAAGAGGTGTAATGGGTTAGCACTCAAAAAGATGTCGCATAAAGCTTACTGTACTTCATTATTCAatgtttttcattattttcacTGCATCAGACGTTTCGGCTTTAGTGCTTTCTAATGCTCTGCCCCATGTGACGTCAAATTGTGTTatgttgtttctgtctgtagACAGATTTTTCCCATATTTAAATAATAAAGCATTTGATGACCCCCCACATTCTAAAATTGCGGTCAtgtggtcgggtaggctgtttggctaacattagctagctagctcactaacTGTAGGTATTATTTTTGCCTCACTCACACTAGACCTGAATTAAATGATGAAACTAGCGGCCAAACGTTTCTTGACAGCGCAATGTGAGTTTTTATTAGAATCAGTATAGCAATGTAACGTTATTGATTATGTTCATATAatctcagacataaattactgcagtttaagaccatccatagatcgtactatatgccagtgaaactgaataac
>TU476500
gtggtcgggtaggctgtttggctaacattagctagctagctcactaacTGTAGGTATTATTTTTGCCTCACTCACACTAGACCTGAATTAAATGATGAAACTAGCGGCCAAACGTTTCTTGACAGCGCAATGTGAGTTTTTATTAGAATCAGTATAGCAATGTAACGTTATTGATTATGTTCATATAatctcagacataaattactgcagtttaagaccatccatagatcgtactatatgccagtgaaactgaataacatgcactcagaaatgtatttcctctgctggaggtgtaaaaTACAGAaggggggcctcccgggtggcgcagtggcctagggcactgcatcgcagcgttagctgtgccaccagagaccctgggtttcgTGCCCAGGCTCCGTCGCAGCcagccacgaccgggaggtccgtggggcgacgcacaattggcctagtgtcgtccgggttagggagggtttggccagtagggatatccttgtctcatcgggcaccagtgactcctgtggcaggccgggcacagtgcacgctaaccaaggtgcaCGGTgtctcctccgacacattggtgcggctggcttccgggttggatgtgcgctgtgttaagaagcagtgcggcttggttgggttgtgtttcggaggacgcatggctttctcCCGAGCCagcacgggagttgtagcaatgagacaagatagtaattactaacaattgtataccacaaaattggggagaaaagggggtaacaaatttaaaaataaaaaaaaacacattctccctgtttttgtttgcttggatcCCAGCCCTGACCATAGATTGCTTTgcatgtttctatttttagtttggtcagggtgtgatgtgggtgggtattctatgttgtatggtctaggttttctttttctatgtgtttggcctggtatggttctcaatcagaggcagctagcATTTATAGCGCCTAAGAAACgcattgccattaattggaaggttggttatcctcccagAATGTCACAATGGATGGCAGAAATTATGCATCACTAGATTTGAAttacaagattaagggtatactgtgcaactttcataaggtctgTGTGGCTTATATAGAGTAGCCTACTGTATGACAAAATGGATCTGTATTGAAAATATTAGATTTTTTTAGTCGAGCAGTCGCAAATATATCATTTTTTTCATGGCACACTAGGTATTATTTTTGCCTCACTCACACCTGTGTGATTTGcccctgtctcagtggactaatccattgaggAGGCCGTGGGATGCCACGGTCTAAGAATATGAAGAGTTTGGCTCATGCACAAGGCTCActccctgtcacgccctgaccgtagattgctttgtatgtttctattttttgcttggtcagggtgtgatgtgggtgggtattctatgttgtatggtctaggttttctttttctatgtgtttggcctggtatggttctcaatcagaggcagctgtctatcgttgtctctgattgagagacatttttaggtagcctgttttcccattttgaattgtgggtgattattttttggttactgtttgttgcacctgtcagaactgttcggttatcgttttgttgtttttgttcgtcTGTTCATTCTGGATTAAAAGTATTAT
>TU476501
gtggtcgggtaggctgtttggctaacattagctagctagctcactaacTGTAGGTATTATTTTTGCCTCACTCACACTAGACCTGAATTAAATGATGAAACTAGCGGCCAAACGTTTCTTGACAGCGCAATGTGAGTTTTTATTAGAATCAGTATAGCAATGTAACGTTATTGATTATGTTCATATAatctcagacataaattactgcagtttaagaccatccatagatcgtactatatgccagtgaaactgaataacatgcactcagaaatgtatttcctctgctggaggtgtaaaaTACAGAaggggggcctcccgggtggcgcagtggcctagggcactgcatcgcagcgttagctgtgccaccagagaccctgggtttcgTGCCCAGGCTCCGTCGCAGCcagccacgaccgggaggtccgtggggcgacgcacaattggcctagtgtcgtccgggttagggagggtttggccagtagggatatccttgtctcatcgggcaccagtgactcctgtggcaggccgggcacagtgcacgctaaccaaggtgcaCGGTgtctcctccgacacattggtgcggctggcttccgggttggatgtgcgctgtgttaagaagcagtgcggcttggttgggttgtgtttcggaggacgcatggctttctcCCGAGCCagcacgggagttgtagcaatgagacaagatagtaattactaacaattgtataccacaaaattggggagaaaagggggtaacaaatttaaaaataaaaaaaaacacattctccctgtttttgtttgcttggatcCCAGCCCTGACCATAGATTGCTTTgcatgtttctatttttagtttggtcagggtgtgatgtgggtgggtattctatgttgtatggtctaggttttctttttctatgtgtttggcctggtatggttctcaatcagaggcagctagcATTTATAGCGCCTAAGAAACgcattgccattaattggaaggttggttatcctcccagAATGTCACAATGGATGGCAGAAATTATGCATCACTAGATTTGAAttacaagattaagggtatactgtgcaactttcataaggtctgTGTGGCTTATATAGAGTAGCCTACTGTATGACAAAATGGATCTGTATTGAAAATATTAGATTTTTTTAGTCGAGCAGTCGCAAATATATCATTTTTTTCATGGCACACTAGGTATTATTTTTGCCTCACTCACACCTGTGTGATTTGcccctgtctcagtggactaatccattgaggAGGCCGTGGGATGCCACGGTCTAAGAATATGAAGAGTTTGGCTCATGCACAAGGCTCActccctgtcacgccctgaccgtagattgctttgtatgtttctattttttgcttggtcagggtgtgatgtgggtgggtattctatgttgtatggtctaggttttctttttctatgtgtttggcccggtatggttctcaatcagaggcagctgtctatcattgtctctgattgagagccatacttaggtagcctgttttcccattttgaattgtgggtgattattttttggttactgtttgttgcacctgtcagaactgttcggttatcgttttgttgtttttgttcgtcTGTTCATTCTGGATTAAAAGTATTAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977960.1 False 3279 mRNA 0.42 16 58484043 58491225
TU476500 False 1643 lncRNA 0.45 2 58490968 58493673
TU476501 True 1643 lncRNA 0.45 2 58490968 58493673

Neighbor

gene id symbol gene type direction distance location
LOC118964530 NA coding upstream 1734 58480937 ~ 58482309 (+)
LOC118964627 NA coding upstream 79154 58401429 ~ 58404889 (+)
LOC110524143 LOC106573897 coding upstream 113953 58312332 ~ 58370090 (+)
LOC110524142 NA coding upstream 278673 58199387 ~ 58205370 (+)
LOC110524140 LOC106613630 coding upstream 323909 58158521 ~ 58160134 (+)
LOC110524149 LOC106613638 coding downstream 8880 58500105 ~ 58505933 (+)
LOC110524150 LOC106613639 coding downstream 21704 58512929 ~ 58539436 (+)
LOC110524154 NA coding downstream 88317 58579542 ~ 58620188 (+)
LOC110524153 LOC106613641 coding downstream 129293 58620518 ~ 58646110 (+)
LOC110524155 LOC106613642 coding downstream 155935 58647160 ~ 58656842 (+)
G420465 NA non-coding upstream 6638 58477182 ~ 58477405 (+)
G420159 NA non-coding upstream 8791 58474846 ~ 58475252 (+)
G420155 NA non-coding upstream 15847 58467992 ~ 58468196 (+)
G420153 NA non-coding upstream 17329 58466440 ~ 58466714 (+)
G420145 NA non-coding upstream 27439 58456356 ~ 58456604 (+)
G420495 NA non-coding downstream 66163 58557388 ~ 58558448 (+)
G420511 NA non-coding downstream 86879 58578104 ~ 58578620 (+)
LOC110524159 NA non-coding downstream 178291 58661910 ~ 58669975 (+)
G420117 LOC100846954 other upstream 67267 58411240 ~ 58418268 (+)
G419452 NA other upstream 584395 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1116706 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1525878 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1558867 56923924 ~ 56925176 (+)
G420634 NA other downstream 451503 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2203032 60694220 ~ 60695905 (+)
G423922 NA other downstream 3230312 61721537 ~ 61722024 (+)
G424079 NA other downstream 3614298 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3791927 62283054 ~ 62327772 (+)

Expression


Co-expression Network