LOC110524150 (LOC106613639)


Basic Information

Item Value
gene id LOC110524150
gene name LOC106613639
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58512929 ~ 58539436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603534.2
ATGCTTGCAGTCAAACAATCAATACTGCACGCCTCTGGTTATTTTCTGGTATTTGGTCCGGACTGCGTTCTCATCTGCAGTGAACCGCACCAAGGTACGAACGGAATCTGACTGAGACCAACCTTTTTGAGCGAACCACGGTGCGCTCGAGTGCGGATAGTGTTCACACCAGTCCAAACGAACCGAACCGCTCCAAACTAATTTGCTGTGAAAGCCCACAGAGCCCATCATACAAATCAAATACACACGGTAAGTCCTTATTTAATGATGTGATAATACTCATCATTAGATTTCCAGAAAATAGAAAATGGCATGTAGTATGCGATAtgttatgtagctagctagacatttacatttgtatttttaatttcaTAGCATCATTTACAGCACGCGCGTAATGACGACAAACCATCGTATCCAAGCGTTGTGCGTAATGTCCCATTGAGAAGAACAGCAAAAGATGGCGAGCTCAAACAATCCACGTAAATTTAGCGAGAAAATCGCTTTACATAATCAGAAACAGGCGGAGGAGACTGCGGCTTTCGAAGAAGTGATGAAAGACCTAAACATCACTAGAGCTGCACGGTTGCAGTTACAGAAGACCCAGTATTTGCAACTAGGGCAGAATCGTGGACAGTACTATGGAGGCTCACTGCCCAATGTCAATCAGATTGGAAATAGCAACATTGACCTGCCTTTTCAGAATTCCGCTTTGGACACCAGCCGGTCGAACAGGCATCACGGGCTGGTGGACCGTGTTTACCGCGATCGGAACCGTATAACCTCGCCCCATCGCCGGCCCCTCTCTGTGGACAAACATGGCCGCCagATTGACAGCTGCCCCTATAGCTCCGTGTACCTCTCACCCCCACCGGATACCAGTTGGAGGAGGACAAACTCTGACTCAGCACTACACCAGAACACCATGAACCCTGTGCCCCAGGATGCGTTTGCAGGGGGATCACAAGAGCTACAGCCTAAACGAGTGCTGCTGCTTACAGTGCCTGGGACTGAGGAGTCTGAATCAGATGCAGACAAGGATACACAGTGGGATAACAAAAAGAATGACTCATCAAGAACCAAGTCCTGCGAAGTCCCTGGGATCAATATATTTCCATCACCAGATCAGGAAGTGAACACGTCATTGATCCCGGCCACGCTCAATACGGGAGGCTCCCTGCCTGATCTGACCAACATCCAGTTCCCCCCACCGCTGCCCACTCCGCTGGATCCAGACGACACTGTGGCGTTTCCTTCCCTTAGCTCATCCAACAGCACAGGCAACCTGACCACCAACCTCACCCACCTCGGCATCAGTGCTGCCAGCCACGGGATCACTACCACCTCTCAGCCTACCATGACTGTGGCGGCCCAGCGTAGGCAGCCCACCCTGATCCCCCTAACCCTCAATGCAGACCCCCAGCCACAGCAGTCCCCGCAGCAGCTCTCCCCCACGCTGTCACCCCCTCTCAACATCCAGGCAGTGGCGATGGAGGCCTTGACTCTGGAGCAACAGCTATCCCAGTATGCTTTCTTTAGCCAGCTGACAGTTCAGGCCCAGGCTCAAGTGCTCAATGACCTGCAGCAGCAGGCCCTGCCCCAGGGCATCAGGCTGATCACCCTGGCCACCACCACTGCCCCAACAGCCACCCAGTCCTCCCCGGACAGCCAGATCCAGACGCCTGCAAGCATCAACATCAACTCGCACATTCCGGTGGTGGGCAGTATATTTGGGGATTCGTTCTACGATCCGCAGCTAGCATCTCGGCAGACCAATGCTCTCTCCCACCAGCTCGAGCAGTTCAATATGATTGAAAACCCCATCAGCTCCAATAGCCTATACAGCCAGTGCTCCACCCTCAACTACACACAAGCAGCTATGATGGGCCTTACAGGGAGCAACCTGCATGACTCCCAGCAGTTGGGCTACAGTAGCCATGGCAACATCCCTAACATCATTCTCACAGTCACAGGTGAGTCTCCACCCAGCCTCTCTAAGGAGTTAACCAACTCACTGGCTGGTGTTGGAGATGTCAGCTTTGATGCGGACTCTCCCTTCCCATTGGACGAGCTGAAGATCGACCCTCTCACCTTGGATGGACTGCACATGCTCAATGACCCCGACATGGTTCTGGCTGACCCTGCCACTGAGGACACGTTCAGGATGGACAGGTTGTAA
>XM_021603533.2
ATGCTTGCAGTCAAACAATCAATACTGCACGCCTCTGGTTATTTTCTGGTATTTGGTCCGGACTGCGTTCTCATCTGCAGTGAACCGCACCAAGGTACGAACGGAATCTGACTGAGACCAACCTTTTTGAGCGAACCACGGTGCGCTCGAGTGCGGATAGTGTTCACACCAGTCCAAACGAACCGAACCGCTCCAAACTAATTTGCTGTGAAAGCCCACAGAGCCCATCATACAAATCAAATACACACGGTAAGTCCTTATTTAATGATGTGATAATACTCATCATTAGATTTCCAGAAAATAGAAAATGGCATGTAGTATGCGATAtgttatgtagctagctagacatttacatttgtatttttaatttcaTAGCATCATTTACAGCACGCGCGTAATGACGACAAACCATCGTATCCAAGCGTTGTGCGTAATGTCCCATTGAGAAGAACAGCAAAAGATGGCGAGCTCAAACAATCCACGTAAATTTAGCGAGAAAATCGCTTTACATAATCAGAAACAGGCGGAGGAGACTGCGGCTTTCGAAGAAGTGATGAAAGACCTAAACATCACTAGAGCTGCACGGTTGCAGTTACAGAAGACCCAGTATTTGCAACTAGGGCAGAATCGTGGACAGTACTATGGAGGCTCACTGCCCAATGTCAATCAGATTGGAAATAGCAACATTGACCTGCCTTTTCAGAATTCCGCTTTGGACACCAGCCGGTCGAACAGGCATCACGGGCTGGTGGACCGTGTTTACCGCGATCGGAACCGTATAACCTCGCCCCATCGCCGGCCCCTCTCTGTGGACAAACATGGCCGCCagATTGACAGCTGCCCCTATAGCTCCGTGTACCTCTCACCCCCACCGGATACCAGTTGGAGGAGGACAAACTCTGACTCAGCACTACACCAGAACACCATGAACCCTGTGCCCCAGGATGCGTTTGCAGGGGGATCACAAGAGCTACAGCCTAAACGAGTGCTGCTGCTTACAGTGCCTGGGACTGAGGAGTCTGAATCAGATGCAGACAAGGATACACAGTGGGATAACAAAAAGAATGACTCATCAAGAACCAAGTCCTGCGAAGTCCCTGGGATCAATATATTTCCATCACCAGATCAGGAAGTGAACACGTCATTGATCCCGGCCACGCTCAATACGGGAGGCTCCCTGCCTGATCTGACCAACATCCAGTTCCCCCCACCGCTGCCCACTCCGCTGGATCCAGACGACACTGTGGCGTTTCCTTCCCTTAGCTCATCCAACAGCACAGGCAACCTGACCACCAACCTCACCCACCTCGGCATCAGTGCTGCCAGCCACGGGATCACTACCACCTCTCAGCCTACCATGACTGTGGCGGCCCAGCGTAGGCAGCCCACCCTGATCCCCCTAACCCTCAATGCAGACCCCCAGCCACAGCAGTCCCCGCAGCAGCTCTCCCCCACGCTGTCACCCCCTCTCAACATCCAGGCAGTGGCGATGGAGGCCTTGACTCTGGAGCAACAGCTATCCCAGTATGCTTTCTTTAGCCAGCTGACAGTTCAGGCCCAGGCTCAAGTGCTCAATGACCTGCAGCAGCAGGCCCTGCCCCAGGGCATCAGGCTGATCACCCTGGCCACCACCACTGCCCCAACAGCCACCCAGTCCTCCCCGGACAGCCAGATCCAGACGCCTGCAAGCATCAACATCAACTCGTACCGCAATCAGACAGGCTCTCCGGCCAATCAGTCTCCAACCTCCCCAGTCTCCAATCAAGGCTTCTCCCCAGGCTTCTCCCCTGGCGGCTCGCCTCAACACATTCCGGTGGTGGGCAGTATATTTGGGGATTCGTTCTACGATCCGCAGCTAGCATCTCGGCAGACCAATGCTCTCTCCCACCAGCTCGAGCAGTTCAATATGATTGAAAACCCCATCAGCTCCAATAGCCTATACAGCCAGTGCTCCACCCTCAACTACACACAAGCAGCTATGATGGGCCTTACAGGGAGCAACCTGCATGACTCCCAGCAGTTGGGCTACAGTAGCCATGGCAACATCCCTAACATCATTCTCACAGTCACAGGTGAGTCTCCACCCAGCCTCTCTAAGGAGTTAACCAACTCACTGGCTGGTGTTGGAGATGTCAGCTTTGATGCGGACTCTCCCTTCCCATTGGACGAGCTGAAGATCGACCCTCTCACCTTGGATGGACTGCACATGCTCAATGACCCCGACATGGTTCTGGCTGACCCTGCCACTGAGGACACGTTCAGGATGGACAGGTTGTAATGCAGAATACTGGCTGTggccaacaacaaaaaataacccTGGTAAGAAAGGGAAACGAGGCATGGTGGGGGTGAATCATCTCCCCAGTTTCATGGCCATTCAGCTATCTGATCTCACCCTCAAGTCCTTTTAAATAATATGCCATCAAAAACCATTGTAGAGAAGGACATGCAATGACTTGTTGGGTTTGGGAAGGGCATTGCTGTCATTTCCAATGAGATTGTTGGTTGGTCAGAGCTTTGCTAGCCTGCTgcgttttatttatatatatatatatatatacacccacatacacatacagttgaagtcagaagtttacatacacttgggttggagtcattaaaactagtttttcaaccatt

Function

NR:

description
CREB-regulated transcription coactivator 1-like isoform X1

GO: NA

KEGG:

id description
K15309 CRTC1, TORC1; CREB-regulated transcription coactivator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603534.2 False 2179 mRNA 0.52 13 58512929 58539074
XM_021603533.2 True 2640 mRNA 0.51 14 58512929 58539436

Neighbor

gene id symbol gene type direction distance location
LOC110524149 LOC106613638 coding upstream 6996 58500105 ~ 58505933 (+)
LOC110524147 LOC106613637 coding upstream 21704 58484043 ~ 58493673 (+)
LOC118964530 NA coding upstream 30620 58480937 ~ 58482309 (+)
LOC118964627 NA coding upstream 108040 58401429 ~ 58404889 (+)
LOC110524143 LOC106573897 coding upstream 142839 58312332 ~ 58370090 (+)
LOC110524154 NA coding downstream 40106 58579542 ~ 58620188 (+)
LOC110524153 LOC106613641 coding downstream 81082 58620518 ~ 58646110 (+)
LOC110524155 LOC106613642 coding downstream 107724 58647160 ~ 58656842 (+)
LOC110524159 NA coding downstream 122474 58661910 ~ 58669975 (+)
LOC110524157 LOC106613644 coding downstream 134822 58674258 ~ 58699892 (+)
G420465 NA non-coding upstream 35524 58477182 ~ 58477405 (+)
G420159 NA non-coding upstream 37677 58474846 ~ 58475252 (+)
G420155 NA non-coding upstream 44733 58467992 ~ 58468196 (+)
G420153 NA non-coding upstream 46215 58466440 ~ 58466714 (+)
G420495 NA non-coding downstream 17952 58557388 ~ 58558448 (+)
G420511 NA non-coding downstream 38668 58578104 ~ 58578620 (+)
G420117 LOC100846954 other upstream 96153 58411240 ~ 58418268 (+)
G419452 NA other upstream 613281 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1145592 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1554764 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1587753 56923924 ~ 56925176 (+)
G420634 NA other downstream 403292 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2154821 60694220 ~ 60695905 (+)
G423922 NA other downstream 3182101 61721537 ~ 61722024 (+)
G424079 NA other downstream 3566087 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3743716 62283054 ~ 62327772 (+)

Expression


Co-expression Network