LOC110524152 (LOC100194657)


Basic Information

Item Value
gene id LOC110524152
gene name LOC100194657
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58573258 ~ 58578611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603537.2
tctctctgtgtgtgttatttgcAGAGCACTATGGCAAATCGTCAATATATTTCTTAGGCCAGCTATCGTTCAAAGATTAGATTAAATAATGTATATAGCTGCATATCTGATCAAAATTGGGGACCCAAAAATAAAAGCCAATCTGTCATTTTTCAACCGTAGCGACGAATTACATGGGGAGCTGACAAATAAGACCAGCTGGAATAGAAAAAACGCTCGGCCGAGAACAAATTATAAAGCTGTGCAGATGAGGTATATTAATAGGAGGGCTTGAGTGGCACAGTCTTTTTACTCGTGAAGACGTGGAGCTTCGTGGCGAGTCGCCGGACAACTGACATTCTAGTGATCATAAAATACACGCGGTAGTGTTATAAATCTTAAATCATGGACGTGTTGGAAGTCCTCAATTTGGGCGATGTTGCCCAAAATTTCTCAAAAATGGGAATGTTTCCAGTTTTTGATCTTGCTTATTACATCGTGTCCATACTCTACCTCAAGTATGAACCAGGGTCAGTAGAGGTGGCTCGCAAGAGCCCCGTGGCCTCTTGGCTCTGTGCCATGCTCTACTGCTTTGGGAGCTACATCTTAGCAGACGTTCTGCTCGGCGGTTGCCCCCTGGACTACTTCCAATACAACAGCCACATCCTCCTAGCCTCCGCTATTTGGTACCTCGTCTTTTTCTGCCCTCTTAATCTGTTCTACAAATGTGTGGCTTTCCTGCCTGTAAAGCTGGTGCTGGTAGCCTTAAAGGAGGTTGTCCGCACTCGTAAAATCGCAGCTGGTGTGCACCATGCCCATCATGCCTACCATAACGGCTTCCTCATCATGGTCATCATCGGCTACGTCAAAGGATCAGGAGTGGCTCTCATTTCCAATTTTGAGCAACTGCTGCGTGGTGTGTGGAGGCCCGAGACCAATGAAATCCTCAACATGTCATTCCCTACTAAAGCCAGTCTGTATGGAGCCATTTTGTTTACACTTCAGGAGACACACTTGCTTCCTGTGTCCAAGACCACCCTCATCTGTCTTTTCACTGCGTTCATGGCTACTACAAAGGTGATTTTGACCGCCCGCCACTCTCACGGCTCTCCCTTCGTCCTCATCGAGTCTTGGGTGTGCCACTTGCTCTTTGGCTCCCCTCTTGGAGGTGGTGAGGAGGAGCACCATGCTGCCTCTGCCCCTGCACCTGTCGCCCCTGTCTCACCAGTCAAAACCAAGGAAGAGTTTGGCGAAGGCACCCGCAAGAGGAAGTCCAAGAAAGCAGAGTAGCACGCAAACTACTACACCAGTGAAGGGGAAAAAAGGTCCCCACCGCATCCACAAAACGCAACTGATCTCCCCTCATGGTCCAGCCTTCTGTTTAGACATGATGGAGTCTCCCATTCCTTGCTGGGGAAAGGTGCAGTTTGATGTTTACCAAATGAGTCCCTTTCTATTGAAGGAAATGGTGCTTTCTATGTCATATCACACTGTATGGGGATTCTGTAAATAGCTCACCAAAGTCTCAGACTTAAATCATCGTCCCAGCCAGTACATATCtacttatttatttatgtatttattgtgAAAACTGTGAACATCTCTCCTACTGTGTGCAACAGCATGTGGTGAACAGTGTTACTGCAAGTTACTTTTTTGTTTTAGGATGGCCTTTGTTTCCAGTGCTTCTGCTGTTAGCTATACATGTTTTTGGTTTAAACCCAGTCAGACCTATTTCAGTAATGTAAAGAAATTGGATCAAAAGCACAATCTGACCCTTGATCAGACAATCAGACCACAGAATCAATCAGACAATAATATAATGTGAATAATACATGGCTGCTTTTTACAAAGAAAACTAGTGAAAGTAATGTCCTTTATTAATAAAGGCAGGTCAGAATTCTTATGTGGTGAGAGTTTTTGATTCAGTTGTTTACTATGATATTGGGATATGTTGTTTAATGGTTACCGTTAATATATGCGGCTGCTGGGCATTCATTCAGAAATGTGCAATATAAAAGTACAATTAATTTTGTTTACAAAAGAGAGGGTCACAATACCAGACAGAGATAAATAGTATGAGGGGAAACTGCCACTGTACCCACATACAACACATGAAATGACTCCCTGAaaaaaataaaggttaataaCATAAATACACAAAAGTAACCTTTTAAAAGACACAACAGACGCAGGTATTTAAGGAGAAAGTTAAATGTCTTGATATACTTTTCCATAAAGAAGTTGAAATTA

Function

NR:

description
trimeric intracellular cation channel type A-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016020 membrane cellular_component
GO:0005261 cation channel activity molecular_function

KEGG:

id description
K24013 TMEM38, TRIC; trimeric intracellular cation channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603537.2 True 2232 mRNA 0.43 6 58573258 58578611

Neighbor

gene id symbol gene type direction distance location
LOC110524151 LOC106573894 coding downstream 5575 58546384 ~ 58567683 (-)
mast3b LOC106613636 coding downstream 98025 58416872 ~ 58475233 (-)
LOC110524144 LOC106613635 coding downstream 163938 58379780 ~ 58409320 (-)
LOC118964716 LOC106613467 coding downstream 193213 58377558 ~ 58380045 (-)
LOC110524141 LOC106613631 coding downstream 386209 58163918 ~ 58187049 (-)
LOC110524158 LOC106613645 coding upstream 92860 58671471 ~ 58675928 (-)
LOC110524167 LOC106613995 coding upstream 255651 58834262 ~ 58836111 (-)
gamt gamt coding upstream 273408 58852019 ~ 58856447 (-)
LOC118964628 NA coding upstream 404077 58982688 ~ 59001580 (-)
trnaa-ugc-13 NA coding upstream 447915 59026526 ~ 59026598 (-)
G420773 NA non-coding downstream 50522 58521878 ~ 58522736 (-)
G420763 LOC106613638 non-coding downstream 66256 58505075 ~ 58507002 (-)
G420468 NA non-coding downstream 94423 58478366 ~ 58478835 (-)
G420466 NA non-coding downstream 95260 58477787 ~ 58477998 (-)
G420442 NA non-coding downstream 116656 58456365 ~ 58456602 (-)
G420808 NA non-coding upstream 23787 58602398 ~ 58602750 (-)
G420809 NA non-coding upstream 40842 58619453 ~ 58620031 (-)
G420825 NA non-coding upstream 78503 58657114 ~ 58657407 (-)
G420828 NA non-coding upstream 80667 58659278 ~ 58659542 (-)
G420832 NA non-coding upstream 85827 58664438 ~ 58664657 (-)
G420421 NA other downstream 159115 58413128 ~ 58414143 (-)
G420193 NA other downstream 459198 58112387 ~ 58114060 (-)
G419714 NA other downstream 867322 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 947084 57612040 ~ 57627128 (-)
G419603 NA other downstream 961691 57611059 ~ 57611567 (-)
G420982 LOC106613655 other upstream 447492 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 554259 59131152 ~ 59138429 (-)
G422347 NA other upstream 1522154 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2480383 61058949 ~ 61081864 (-)
G424474 NA other upstream 3038259 61616870 ~ 61617244 (-)

Expression


Co-expression Network