LOC110524159


Basic Information

Item Value
gene id LOC110524159
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58661910 ~ 58669975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473549.2
ttaccttagctttcttgggaacaggaacaatggtggccctcttgaagcatgtgggaacagcagactgggatggggattgattgaatatgtccgtaaacacttgTTCAATGACAAAGTTGAATCTAATCTAAATTTGTAAAACATGGTATATATTGTTGTAATCAATGACTGTGAGGACATTGGGAGGAAACTTCTTCAAAGGGAATCTTTCTGGATCCACAGGGTCAACACACTGTCTCCTCTTGGCCTTAACGAGGAGTTTGACTTGAAATAGTTTTTATAGTTTcaaaattattttatattttaaaatCCTAATTGAatattgtatgtgtatgtatattactgtaaatattAATCAAATTTATTGTGTATGATCATatattgtgatacattgaatgttAATATTGTGTACCTATGTTATACATTTTTACTTTCTGTTTCAGGAAGTACTGCccctatatatactatatatgtcACTGAGGACTGCCCCTATATATAGAACCTTCCACCCCcacctgggatatggatgcctgaTAAAGACATAAGGGTCAAAGCGTTGTtataaatatcacctgggagcatgagcagcagtgtgttgagttttcctttctgttttcctTTTGCATATGGTTGTAACCCACTATTATTTTGGGCTGAGTCCTTCAATGATTTCCGTTGGGAATCGTTTATGCCTATTGCCACTAGCCCTCCCCTTAACAACACTCGAAGAAGACATCTGTGACAACCCTAatcatttctcctcctgtctcctctttctttgttctgttagacaggtatgTGGTGTACACAAGCATAATATCTATAGAACATCTTAGAGTAAATGGTTGTCTGAGTGATACTTAGCTTTTATTATTGAAATTGTAAAGTTTAAATGTGTAAATTGATTGAGTGAAACCGTTAGCGATCTTGACATAGAGATGACTGTGCTAAGCTAGGCTAGCCCATCGAATAACACAATAAGAAATGTCGGCAGCTAATATTCTGGTTTTAACTTATTGATTCATAGGTGAGGTAATATTGTGGTTTCTTTTCTACTCCGTTTATATTTTCTAGGCGCTGACATCTCCCCATTTGTTTAGAAAAACTGTATACGCTAACGCTCAGCTAACTGCTCTAATGCTAGCCTGTCAAGCCTATAGGGTTGCTATGAGCTTAGCAGCTACCGTTACCTGGCTCAGTATAGAGATGATTGCACTGGTTTATGGTTAATTTAGCTATAAAGGTTCAAATAGGCTTCCttatgtgtgtatttatttatattgaaACAGTACATGATTGTTAACTTTTATATCATCTGAGGTTAAGATAAATACTGAGAAGGTATATTTTTAAATGCAAGTCAAGGTATTAGCTAGCGGAATTGTTTTAAATACAGAGAATGTACTATGTTACTGTACTTACAGTACTTTCTAGTCTTTTACAGCATCTGAATGAATTATTCATGTTTTGCAGATCGAAATTCACCCAGGCTCAAACATTACAGTGGGCGACCATGCAAACAGGCCAACTGCGATGGCAAGAGAGCTGTGGTTTTGATGTTGACATGTTGCTGAATAACAACCTGAAATGTGGCAAAACTAAAAGGGGAGAAAAAAACCGATCCTGAAAAAAATGCTGGCAAGAGTGCTTTCCGGGTGTAACAAAGAGACAAGTGGGAACGGCTTGCAACAGTAAAATGGCTGAATTAAGAAGTGATGAGAGAAAAGCATTTAATGAATAGGATGAAATTAAGtttttattgttttgtgtttgttctAATGTTTTATTACCATGGCTACAAGTACTATGACTACAAGTATCACTGAAATAATGCAGGTATTGTGACATAAGGGacatatacagtgtcttcagaaagtattcacaccccttgactttttccacattttattgtgttacaaagtgggattaaaatggatttaattgtcatttttttgtcaacg
>TU476583
CTTATTAAACTGAATCTGATAATCGTTtttcaattttaaaaaaaattatatctctTCATTTATGAGCCCAAACCCAACCATTAACTGTTCTATGTGCTCTTTATCTTCTATTTGTTGCTTGCTTCCACAGATGCTGGCAAGAGTGCTTTCCGGGTGTAACAAAGAGACAAGTGGGAACGGCTTGCAACAGTAAAATGGCTGAATTAAGAAGTGATGAGAGAAAAGCATTTAATGAATAGGATGAAATTAAGtttttattgttttgtgtttgttctAATGTTTTATTACCATGGCTACAAGTACTATGACTACAAGTATCACTGAAATAATGCAGGTATTGTGACATAAGGGacatatacagtgtcttcagaaagtattcacaccccttgactttttccacattttattgtgttacaaagtgggattaaaatggatttaattgtcatttttttgtcaacga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473549.2 False 1961 mRNA 0.36 3 58661910 58669974
TU476583 True 460 lncRNA 0.33 1 58669516 58669975

Neighbor

gene id symbol gene type direction distance location
LOC110524155 LOC106613642 coding upstream 5068 58647160 ~ 58656842 (+)
LOC110524153 LOC106613641 coding upstream 15800 58620518 ~ 58646110 (+)
LOC110524154 NA coding upstream 41877 58579542 ~ 58620188 (+)
LOC110524150 LOC106613639 coding upstream 122474 58512929 ~ 58539436 (+)
LOC110524149 LOC106613638 coding upstream 155977 58500105 ~ 58505933 (+)
LOC110524157 LOC106613644 coding downstream 4284 58674258 ~ 58699892 (+)
LOC110524161 LOC106613992 coding downstream 30021 58699995 ~ 58710980 (+)
LOC110524162 LOC106613646 coding downstream 56557 58726531 ~ 58735992 (+)
LOC110522978 r3hdm4 coding downstream 77618 58747592 ~ 58776342 (+)
LOC110524163 LOC106613647 coding downstream 86270 58756244 ~ 58802663 (+)
G420511 NA non-coding upstream 83290 58578104 ~ 58578620 (+)
G420495 NA non-coding upstream 103462 58557388 ~ 58558448 (+)
LOC110524147 LOC106613637 non-coding upstream 168237 58484043 ~ 58493673 (+)
G420545 NA non-coding downstream 9612 58679586 ~ 58679864 (+)
G420606 NA non-coding downstream 132920 58802894 ~ 58803093 (+)
G420608 NA non-coding downstream 134008 58803982 ~ 58804208 (+)
G420610 NA non-coding downstream 135105 58805079 ~ 58805298 (+)
G420621 NA non-coding downstream 161414 58831388 ~ 58831587 (+)
G420117 LOC100846954 other upstream 245134 58411240 ~ 58418268 (+)
G419452 NA other upstream 762262 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1294573 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1703745 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1736734 56923924 ~ 56925176 (+)
G420634 NA other downstream 272754 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2024283 60694220 ~ 60695905 (+)
G423922 NA other downstream 3051563 61721537 ~ 61722024 (+)
G424079 NA other downstream 3435549 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3613178 62283054 ~ 62327772 (+)

Expression


Co-expression Network