LOC110524158 (LOC106613645)


Basic Information

Item Value
gene id LOC110524158
gene name LOC106613645
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58671471 ~ 58675928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603545.2
gttctcagaacgttatgtgttaGCTGGGTATTTTAGGCGAAAATCATATTTTAATGAGAGTCACAGCTGAAGCATTCATCACATTATGTTTCTGTCATACAAGTATTTTTTTTCCAGTTAAAAGGAGAAAGTGTTCTGAGGTGAATTTGAAAATGTTTGGGCTGTTTATGAATTCCACTGGGTGCATAGATCAGGTGTGTAGGAGCCACACGATTTGACCCACAGTGTGGTACCCAGCTTTTTAATACTTGAGTGAGCAGTATACAAAAGGCCAACTTGAGTGCTATGGCTAGGCCTGCCACTTTCGTGTATTGCTGATATAAACTGTATATAAGAGGAGGCCAGTTGTGTGCCAGTGAAGTCATCCCTCTCAGAGGTGTTGTATTCTTTTTTTTAACAAGTGTTTGAGACATTCACCCTTGGTCATGGGGCCCCATCTAAACACATAATTAGTCATCCAATAATGGAGAAGTGGCATGGGAGAGAGACGGCACTAAGTGCACTGGCATCGTTCACGTTGTCTCCTTCCATCATAGATGTCACTTCACTACCATTTACAGTCATCTTTGGTTGAGGTGCACAGCTGAGACTCAGGCTTTGTATAAACTGTGTTCATGTTACTGGGCAGCTACCATGACAAAGCTAAGTGACGAGTCTTACCACTGACTTTGTGAGTTTTTAGGTTTTTTTGGATAGTTAGTTATTCATTTAATTTGGAAGTTGCGACATTTGAATGGATAAAACCAAGAGAACAACTCCTTTCAATAAATAATTTATGAGATAAATTAAATCACAAATAAATCACATCatttgtgagaaaaaaaatcaacaagCTCATGATGCTGGCTGGGGGGAAGCCTAAAGGTTTTTCTCGAGAACTTAGTTAATACTGACGCAGAGTGGCACTGGAAATTGCGCAGGTTTTTGGGGAGTCAAGTGACAACTGTTAGTGATGATGGGACATAAAAATGATACAGTGTTCTTTcttaccatccatctacagtctGGGTTTTGCTGATGAGACGTTGACATCTTGCTTGCTTGCTGTGAGTCGAGAGAGCATTTTCATGTTTTTCCATCCACTGGACATTTGGCGAGGTTGAGGACAATTTAAGCTATTGGACAACAGCAAACATGAAACGTGGAATTTACAAGACAAACATCTGTCGCAGTGTCTGCTTGGATTTGAATGGATTTATGAAGTAGCCTAAAGAACGGCTATCTAAAAAAGAACAAATAGCGTGCATTTGATAGCCTACTTCTGGATTGGAAACATGAACGATACACGTAATTCATCTACACATACGTTGCCTGACAAGACAGCTGAAGCGATGGCTGTACCGGTATTAATGTTTGCAGTTGGTGTCATTGGAAATATAATAGCAATAGCCGCTCTTTCTGGATCCAAGCAGGAGCGCAAATCCTCCGCGTTCTTCGCCCTAGTTTGTGGTTTGGCTGTGACGGATCTGCTTGGGACTTGTTTGGCCAGCCCAATCACTATAGCAACTTACctcaatgaaaatgtgttatatGATAATACTAACCTTTGTGAATTCCATTCCTTTTTGTTGCTGTTCTTCGGAGTGGCTGGGCTAAGTATCATATGCGCAATGTCTGCTGAGCGCTACCTCGCGATATGCTGCCCTTACACTTACCAAAGATGGGGAATTGACCAACATTTTGCACGCAAGTGCTTGTTTTGCATTTATCTCAGCAACATTGCGTTTTGTTGTCTCCCAGTGATGGGTATGGCTGGAAGCATTTGTCAGCCCTCCAAAACGTGGTGCTTCATCAACTGGAGGGCTGATAAGACACTGCCTGCAACATATTCGTTTTTATATGCCAGTGTGAGTTTTTTACTGATATTGATGACGATAGTACTCAACTTTGCAGTTTGTGGCAATCTGTTGATAATGCGTCGCAGGAAAATCCAAAGTCCAGTTACAAGAGGGAGCGCACGGGCGCGCTGGAAAGCGCTTTCCTCCGGCGTGGAAGCGCAAATGATGACGGTGCTCATGGTGACCTCCGTGGTTGTTTTAGGTTGCTCAGCGCCGCTGGTGGTACGCGTATTTTCTAACCAGATAACATGGACCGAGAATTCCCATGCAGATTTGATGGCTATTCGGATCGCCTCGGTCAACGCCATTCTTGACCCTTGGATCTACATCCTCCTGAGAAGGACTTTGTTCCGTAAGATTCAGAGATTCTCTAAAGTGTTTTACATTGGTCGCAAAAGCAAAGCACCCATGTTGCCAGTAAAATCATCACAAAGGACATTCCACTACCAAGGAGACATTACAAACACCCATGTATTCACACCTCTGTGAAGCTCCTTGCATAAAAAACATAATTCACCTGCCCGCCACAGTCGCCTAGTGCGCTCACGTCACCCAGGTTGGGACAAAGCTTGCCATTTCTCCCCACAAGTTGTCCGATATCCAGTCTCACAATGTGTTCTGTCGATATAATTGATGATGGGTGGCAATTCACCTGTTTtaaatatataactttcaaaaACAGTAGATGAATTAAacaaattaatcatgtaacagtAAAATTATAGATAGTACCATGGGCTCAAGCATTTGGCTCAATCACAGCTATGTATACGTTTTACACAAACAATAAATATGACATTGTGAAGTTAAAGAGATCCGTTGTATGAACACCAGGTGTGTTTAGTGCTGCTAACCAATTCAGACGTTTTAAGTTCATTGGTAATATCAATGAGCAAAGAGTGGGTCTACGGAATGATTAGGTTTTGAGTCTGTTTAGTGTTGGCCTGAGATGACCCCTTGTTTTTCCCCATCGTGGCCACAGAGAGGTTGTTCATTACTtggttaaaggtccaatgcagccgttttttaTCACAATACCAAATAATTTCCggataacaattaagtacctcactgtgattgttttgaattaaaatggtcaaaaattaACAAAtaacttcttagcaaagagcaattctTCAAGCAAGAATTATGCTAGGACTCTCTGGGATTGGTCTGAGCGGGAAGGCTCAAACGGAAAACTAGCTATTGGCAGAAAGGTTTCGAACTCTCTTCCTTATTGGTCTatttggtgatgtcaccaggcagaccAAAATTGCATCCCACCCACacaggcagaaatttcaggcGGCCTTtgaaaacagctcttacactaaaagggcattaaacataattttcacaattttacagtattattccaaccttatagtgtggaaatatatataaaacacacaaaaaatctAGTTTTTGTTTGCACTGAGCCTCTAACCAAGACCCTTGTTGATAGAGTCACTTTGTCATCACCCTTAGCGGTGTTGGCAGAAAGCGGATGTTGCAAGATCAGGGATACTTCTCTTTCCCCTGAAAAACGGAAGTGGGGACTTCACTTAAATATGGTTTTTAACAGAGGTGGCGCCTCCCCTTCACAACGAATCACGCCAATACTTTTCTTTTCTTGAAACTTGCATAAAGTAGAGCTCAACTTTTTCTACCGCTCTGCTAGCAGGGTTCTCGCTGCTCACCTTCCCACAATCTCCCTCACATTTCTCTGTGTTCCCTCATTGAAAATGAAAAGGGGGAAAAACTTATCCTGCCGAATTCGTTGTTGGTGAAAACCCACTGTCAGGCGTCATTCTATCCCTGTTATGTTAGGTTACTGTGCCATAGACCCCTGAGGGGCTAATGGATCAAGCTCAAAGGCAGTTAATGCACAAGATGTAGTTTAATCTCCCGGATCTACTCTGTACCCTGAAGGGGCAACAAACGCAAAGTAACAGACATTTCACATCAGACACTTTGGTGTCTCTTCTGCAGAGTTGTAAACAACCTCAGAGGAGCAGGATGTGTCCAAGTGTTTTTCTCAAAACTTTGGACTGAATTCTAAACACTGTCCAGCAACTATACTTGCGACTGCAGTTACTCTCAAAAAACAGGCGTTGAACTTTGTCATGGAGGTCATGGGAGAGAGACTTCCCAGGGAGATGATTAGTTCCCCTAGGTTGTGTTCCTATTTTCTACCCTTCACCCAGaaatgtgcacttgttcacttccacTCATGCATTTAAAAGTATTGGATTGGTGAAAGCGGCTGGAGGGACTTTCCACCTGTTCCTTTTAAAGGAATGTACTGGcacaaatcaacgtttattggtcacgtacatacacagtttagcagatgttatagcagtTGCAGTGAAATaattatgttactagctcctaacatgcagtaaaatgtcaaacaagtatCCAAATAATTTAAATATTCGTAAAAaagtacagcaaaaaaaaaaaaacgttggtAAGAATCCAATTAAtaacccaaatagcactgtaacagtaatcAAAATGCAA

Function

NR:

description
prostaglandin E2 receptor EP4 subtype-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603545.2 True 4367 mRNA 0.42 2 58671471 58675928

Neighbor

gene id symbol gene type direction distance location
LOC110524152 LOC100194657 coding downstream 92860 58573258 ~ 58578611 (-)
LOC110524151 LOC106573894 coding downstream 103788 58546384 ~ 58567683 (-)
mast3b LOC106613636 coding downstream 196238 58416872 ~ 58475233 (-)
LOC110524144 LOC106613635 coding downstream 262151 58379780 ~ 58409320 (-)
LOC118964716 LOC106613467 coding downstream 291426 58377558 ~ 58380045 (-)
LOC110524167 LOC106613995 coding upstream 158334 58834262 ~ 58836111 (-)
gamt gamt coding upstream 176091 58852019 ~ 58856447 (-)
LOC118964628 NA coding upstream 306760 58982688 ~ 59001580 (-)
trnaa-ugc-13 NA coding upstream 350598 59026526 ~ 59026598 (-)
atp13a3 LOC106613657 coding upstream 379192 59055120 ~ 59115105 (-)
G420837 NA non-coding downstream 874 58670050 ~ 58670597 (-)
G420833 NA non-coding downstream 6512 58664692 ~ 58664959 (-)
G420832 NA non-coding downstream 6814 58664438 ~ 58664657 (-)
G420828 NA non-coding downstream 11929 58659278 ~ 58659542 (-)
G420825 NA non-coding downstream 14064 58657114 ~ 58657407 (-)
G420843 NA non-coding upstream 7978 58683906 ~ 58684177 (-)
G420844 NA non-coding upstream 9651 58685579 ~ 58685920 (-)
G420846 NA non-coding upstream 12634 58688562 ~ 58688785 (-)
G420847 NA non-coding upstream 13008 58688936 ~ 58689211 (-)
G420850 LOC106613644 non-coding upstream 16289 58692217 ~ 58694635 (-)
G420421 NA other downstream 257328 58413128 ~ 58414143 (-)
G420193 NA other downstream 557411 58112387 ~ 58114060 (-)
G419714 NA other downstream 965535 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 1045297 57612040 ~ 57627128 (-)
G419603 NA other downstream 1059904 57611059 ~ 57611567 (-)
G420982 LOC106613655 other upstream 350175 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 456942 59131152 ~ 59138429 (-)
G422347 NA other upstream 1424837 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2383066 61058949 ~ 61081864 (-)
G424474 NA other upstream 2940942 61616870 ~ 61617244 (-)

Expression


Co-expression Network