LOC110524161 (LOC106613992)


Basic Information

Item Value
gene id LOC110524161
gene name LOC106613992
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58699995 ~ 58710980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603546.2
ACAGACCGAACAATATAGCGCAGCATGCTTGAATGGCACCCAAAATACGAGTTCAACATGGACCACTTAATTTTCATCTAAATTGGAGTTAACCTTCAAACGGACAAAGATGGGGGAGAGTGTGGATGTTTGTGCATTGAGGGCCAGGTTCCATGCCAAGGCTGACATGGCAGGTAGTCGAGACAGCACTTCTCCAAAACCTCCACTGCGAGGATTTGGGAGAGGAGGCCCGAGGTTGGCAGACGTCAGTGTTACAGCAAACGGAGGGGTCCGAAATAAACTCATGCTTATGGTTCCCACACCACCACTTCCTGGATCAAGCTACTCCCCGGACCTTCAGAGGCTACCACCACAACATGTAAGGGCTGAACTGGAGGGCATGTCCACCAGCCCCGAGCCTCATAGTGTCTTCCACCACCTTCCACCATCACACCGACCCCACAGAGCCGCCAAGGAGCTACCCCTACCAGCATCCCCACCGACAAACATAGACCAACAAGGCAGGGTGAGAGTCACTGGGGAGCTTCTGCAGAACATGATGCTGAAGCATAAGGGAGTACACCCTGGCCCTACCAAGCCGACGCCCCCCTCCCTGCCCAGCCAGAGAACTCTTACAGGGGTGACCCCCCTGAGAAGGGCCCTGCCCCCTGAGGCTCCCAGCCCTATAAAACCCAGACGGCCCCCTCACATCAACCTGCAGGCCCATCAGAGAAGCACCAGAGCACTACACCTCGCAGGGCAACCAGGGTTAAGGAAGACTGACGGTGGCAGTAGTCAGTCTCTCCCAGGGCTAGTCAGTCTCTCTGGCCCCCCAAGACTTCCAACCAAGCCCAGCAGCCTTCCACGGCAGTGTACCCCAGTACATTTCGAGGATGACCAGGGGGAATATGACGACGTAGGCCTTGATGTGAAACCACCTCCCCCGCCCCTAAATCACCCAGGGAGCTGGGACAAGAGTGACTCCTGGAATGACAATAGTTCTTCACGAGTAGATGAGGGGAGCGATGGAAGTGATGTCTATAAAGGCAATGAACAGGAGGTGAAAAACACAAGTTCTGATAAGAAGAAACAGAAAGAGTTGAGGTGGCAGCAAGAGCAGGAGAAGAGAAATCAAAAGAAAAGACTGGAAAGGGACAACAAATACAGAAAGAAATTTAAGCTGGGTACTGGGGACATAGATGTCCTTCACATGGGCAGGGTTCGACACGACTGGCAGGGGGGCAAGCATGATCTAAGTGTTCGTCAGGGAAACAGAGTGGAGATCATACGGGTTAAGAACAACCCCGATGGCAGGTGGCTAGCCCGCACACAGACTGGCACCTATGGTTACATCATTAGCACGTGTGTGGATGTGGATTATGAGGAAGTGAAACGTAAACTCAAACTGTCCAGAGCGCCTGACCCCtcactgccaccaccaccacctcctgtCCGTTCTGAAGACAATGACATCTATTATGATGTTGACTCCTCGGGAAACATGAACAGTCTAGATCCAGTAATGAGAGAGATGCTGGAGAAAGACGAAAAGGAATTTAGAAAAAAGTTTAAGTTTGAGGGACCGATTTTGGTGTTACACAGCATGATGGTTGACCTGAACGCAAGCATCAAGAAGACAGGAGGGACGGCTCTAGCTGTGGTTCAAGGAGAGATCCTGGAGGTCATTCAAGTCACCAGTGACAAAAAAGCCCTGTGTCGTAACAAGCAGGGGAAATATGGATATGTGCCCAGGGTTCTTCTACAGGCGGAAGGGGATGATGTTTATGACGATGTCGATCATATCACCGATATTTATGACAACGACAATGTCTATAATGACACAATCCACTGAAGCCCTGTTCTTTTCCTGACCAATGTGAATCACCAATACTGGACAAACAGTAATGCTCGTCTTCCAtggaaacacacactcactccctaAGAATTAAAAGAACAATCGGGGCATGAATGTTGTTTGCGGCAATTTGCAAACTATACTCTATGCTTTGTTCATGGCTGGGA
>XM_036977964.1
tcTCTGTATGGCAGTGGTCGCCAACTGGTAGGTCGCGGTCGACTGGTTGATCTCCAAGACTTTTTTGTAAATCACtgaacatttctgtaaaaaacaacaacgatAAAGCCTTTTTTATTGGTTTCGCGCTGTTGGAGGTACGTGTACTTGGTTCAGCAGCAGCCCTAGTTCCgggaaggcaaagtgttcccatttttatCCATTTCATGTCTGAGGTAGAATTCCGCACAGAGAGCAAGTCAAGTGCAACTATAGGCCTaacgctggccaatcagatagctcagatcaccTTCTGCACAAGTTCCTCAAGCCATAGACTGTAAATATAAACCTCGAACGCACAGCAATGCTGATACTGTGATATTTCAAAACGTGTAAAGCCATGATTAGAGAGAGACTCAACGAatacaacaaagagctgctgtttttatgaGGGGAGAGTGTGGATGTTTGTGCATTGAGGGCCAGGTTCCATGCCAAGGCTGACATGGCAGGTAGTCGAGACAGCACTTCTCCAAAACCTCCACTGCGAGGATTTGGGAGAGGAGGCCCGAGGTTGGCAGACGTCAGTGTTACAGCAAACGGAGGGGTCCGAAATAAACTCATGCTTATGGTTCCCACACCACCACTTCCTGGATCAAGCTACTCCCCGGACCTTCAGAGGCTACCACCACAACATGTAAGGGCTGAACTGGAGGGCATGTCCACCAGCCCCGAGCCTCATAGTGTCTTCCACCACCTTCCACCATCACACCGACCCCACAGAGCCGCCAAGGAGCTACCCCTACCAGCATCCCCACCGACAAACATAGACCAACAAGGCAGGGTGAGAGTCACTGGGGAGCTTCTGCAGAACATGATGCTGAAGCATAAGGGAGTACACCCTGGCCCTACCAAGCCGACGCCCCCCTCCCTGCCCAGCCAGAGAACTCTTACAGGGGTGACCCCCCTGAGAAGGGCCCTGCCCCCTGAGGCTCCCAGCCCTATAAAACCCAGACGGCCCCCTCACATCAACCTGCAGGCCCATCAGAGAAGCACCAGAGCACTACACCTCGCAGGGCAACCAGGGTTAAGGAAGACTGACGGTGGCAGTAGTCAGTCTCTCCCAGGGCTAGTCAGTCTCTCTGGCCCCCCAAGACTTCCAACCAAGCCCAGCAGCCTTCCACGGCAGTGTACCCCAGTACATTTCGAGGATGACCAGGGGGAATATGACGACGTAGGCCTTGATGTGAAACCACCTCCCCCGCCCCTAAATCACCCAGGGAGCTGGGACAAGAGTGACTCCTGGAATGACAATAGTTCTTCACGAGTAGATGAGGGGAGCGATGGAAGTGATGTCTATAAAGGCAATGAACAGGAGGTGAAAAACACAAGTTCTGATAAGAAGAAACAGAAAGAGTTGAGGTGGCAGCAAGAGCAGGAGAAGAGAAATCAAAAGAAAAGACTGGAAAGGGACAACAAATACAGAAAGAAATTTAAGCTGGGTACTGGGGACATAGATGTCCTTCACATGGGCAGGGTTCGACACGACTGGCAGGGGGGCAAGCATGATCTAAGTGTTCGTCAGGGAAACAGAGTGGAGATCATACGGGTTAAGAACAACCCCGATGGCAGGTGGCTAGCCCGCACACAGACTGGCACCTATGGTTACATCATTAGCACGTGTGTGGATGTGGATTATGAGGAAGTGAAACGTAAACTCAAACTGTCCAGAGCGCCTGACCCCtcactgccaccaccaccacctcctgtCCGTTCTGAAGACAATGACATCTATTATGATGTTGACTCCTCGGGAAACATGAACAGTCTAGATCCAGTAATGAGAGAGATGCTGGAGAAAGACGAAAAGGAATTTAGAAAAAAGTTTAAGTTTGAGGGACCGATTTTGGTGTTACACAGCATGATGGTTGACCTGAACGCAAGCATCAAGAAGACAGGAGGGACGGCTCTAGCTGTGGTTCAAGGAGAGATCCTGGAGGTCATTCAAGTCACCAGTGACAAAAAAGCCCTGTGTCGTAACAAGCAGGGGAAATATGGATATGTGCCCAGGGTTCTTCTACAGGCGGAAGGGGATGATGTTTATGACGATGTCGATCATATCACCGATATTTATGACAACGACAATGTCTATAATGACACAATCCACTGAAGCCCTGTTCTTTTCCTGACCAATGTGAATCACCAATACTGGACAAACAGTAATGCTCGTCTTCCAtggaaacacacactcactccctaAGAATTAAAAGAACAATCGGGGCATGAATGTTGTTTGCGGCAATTTGCAAACTATACTCTATGCTTTGTTCATGGCTGGGA
>XM_021603547.2
GGGCGAAATAAAGATAGCACTGGAGTAAGAAGTCCCGTCATATTTGTACGGGAGACAATAGGGCATCGCTGACCTGGGCGGACTGCTGGATGAGCTGGGGGACTGGCTCGCTGGGACGAATCGGTGTAGAGGGTCCTCTGCTAGTTGGAGCTGAATCCTCTCGGGTATTGTCGAAGGTAGTGGAGAACATGGAGGACCTCCTCTATTACCGTACCCAGTTGAGCTAGCTGGTCATGGTGTTGACGGAGTAGGTGTTCCTATACGTCGACCATCTGGGAGATATCCTTAACTTCTGCTGCTTCCATATTTTCGTGAGGCAGTATTCTGTATTGTAAACacaaggagtcaggaagcaggtgcagaagGGGGAGAGTGTGGATGTTTGTGCATTGAGGGCCAGGTTCCATGCCAAGGCTGACATGGCAGGTAGTCGAGACAGCACTTCTCCAAAACCTCCACTGCGAGGATTTGGGAGAGGAGGCCCGAGGTTGGCAGACGTCAGTGTTACAGCAAACGGAGGGGTCCGAAATAAACTCATGCTTATGGTTCCCACACCACCACTTCCTGGATCAAGCTACTCCCCGGACCTTCAGAGGCTACCACCACAACATGTAAGGGCTGAACTGGAGGGCATGTCCACCAGCCCCGAGCCTCATAGTGTCTTCCACCACCTTCCACCATCACACCGACCCCACAGAGCCGCCAAGGAGCTACCCCTACCAGCATCCCCACCGACAAACATAGACCAACAAGGCAGGGTGAGAGTCACTGGGGAGCTTCTGCAGAACATGATGCTGAAGCATAAGGGAGTACACCCTGGCCCTACCAAGCCGACGCCCCCCTCCCTGCCCAGCCAGAGAACTCTTACAGGGGTGACCCCCCTGAGAAGGGCCCTGCCCCCTGAGGCTCCCAGCCCTATAAAACCCAGACGGCCCCCTCACATCAACCTGCAGGCCCATCAGAGAAGCACCAGAGCACTACACCTCGCAGGGCAACCAGGGTTAAGGAAGACTGACGGTGGCAGTAGTCAGTCTCTCCCAGGGCTAGTCAGTCTCTCTGGCCCCCCAAGACTTCCAACCAAGCCCAGCAGCCTTCCACGGCAGTGTACCCCAGTACATTTCGAGGATGACCAGGGGGAATATGACGACGTAGGCCTTGATGTGAAACCACCTCCCCCGCCCCTAAATCACCCAGGGAGCTGGGACAAGAGTGACTCCTGGAATGACAATAGTTCTTCACGAGTAGATGAGGGGAGCGATGGAAGTGATGTCTATAAAGGCAATGAACAGGAGGTGAAAAACACAAGTTCTGATAAGAAGAAACAGAAAGAGTTGAGGTGGCAGCAAGAGCAGGAGAAGAGAAATCAAAAGAAAAGACTGGAAAGGGACAACAAATACAGAAAGAAATTTAAGCTGGGTACTGGGGACATAGATGTCCTTCACATGGGCAGGGTTCGACACGACTGGCAGGGGGGCAAGCATGATCTAAGTGTTCGTCAGGGAAACAGAGTGGAGATCATACGGGTTAAGAACAACCCCGATGGCAGGTGGCTAGCCCGCACACAGACTGGCACCTATGGTTACATCATTAGCACGTGTGTGGATGTGGATTATGAGGAAGTGAAACGTAAACTCAAACTGTCCAGAGCGCCTGACCCCtcactgccaccaccaccacctcctgtCCGTTCTGAAGACAATGACATCTATTATGATGTTGACTCCTCGGGAAACATGAACAGTCTAGATCCAGTAATGAGAGAGATGCTGGAGAAAGACGAAAAGGAATTTAGAAAAAAGTTTAAGTTTGAGGGACCGATTTTGGTGTTACACAGCATGATGGTTGACCTGAACGCAAGCATCAAGAAGACAGGAGGGACGGCTCTAGCTGTGGTTCAAGGAGAGATCCTGGAGGTCATTCAAGTCACCAGTGACAAAAAAGCCCTGTGTCGTAACAAGCAGGGGAAATATGGATATGTGCCCAGGGTTCTTCTACAGGCGGAAGGGGATGATGTTTATGACGATGTCGATCATATCACCGATATTTATGACAACGACAATGTCTATAATGACACAATCCACTGAAGCCCTGTTCTTTTCCTGACCAATGTGAATCACCAATACTGGACAAACAGTAATGCTCGTCTTCCAtggaaacacacactcactccctaAGAATTAAAAGAACAATCGGGGCATGAATGTTGTTTGCGGCAATTTGCAAACTATACTCTATGCTTTGTTCATGGCTGGGA

Function

NR:

description
FYN-binding protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603546.2 False 2001 mRNA 0.51 14 58699995 58710980
XM_036977964.1 False 2322 mRNA 0.50 14 58700503 58710980
XM_021603547.2 True 2254 mRNA 0.51 14 58704902 58710980

Neighbor

gene id symbol gene type direction distance location
LOC110524157 LOC106613644 coding upstream 103 58674258 ~ 58699892 (+)
LOC110524159 NA coding upstream 30021 58661910 ~ 58669975 (+)
LOC110524155 LOC106613642 coding upstream 43153 58647160 ~ 58656842 (+)
LOC110524153 LOC106613641 coding upstream 53885 58620518 ~ 58646110 (+)
LOC110524154 NA coding upstream 79962 58579542 ~ 58620188 (+)
LOC110524162 LOC106613646 coding downstream 15551 58726531 ~ 58735992 (+)
LOC110522978 r3hdm4 coding downstream 36612 58747592 ~ 58776342 (+)
LOC110524163 LOC106613647 coding downstream 45264 58756244 ~ 58802663 (+)
LOC110524164 LOC106613648 coding downstream 97590 58808570 ~ 58828505 (+)
LOC110524166 LOC100194687 coding downstream 131469 58842449 ~ 58849428 (+)
G420545 NA non-coding upstream 20131 58679586 ~ 58679864 (+)
G420511 NA non-coding upstream 121375 58578104 ~ 58578620 (+)
G420606 NA non-coding downstream 91914 58802894 ~ 58803093 (+)
G420608 NA non-coding downstream 93002 58803982 ~ 58804208 (+)
G420610 NA non-coding downstream 94099 58805079 ~ 58805298 (+)
G420621 NA non-coding downstream 120408 58831388 ~ 58831587 (+)
G420622 NA non-coding downstream 121411 58832391 ~ 58832640 (+)
G420117 LOC100846954 other upstream 283219 58411240 ~ 58418268 (+)
G419452 NA other upstream 800347 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1332658 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1741830 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1774819 56923924 ~ 56925176 (+)
G420634 NA other downstream 231748 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 1983277 60694220 ~ 60695905 (+)
G423922 NA other downstream 3010557 61721537 ~ 61722024 (+)
G424079 NA other downstream 3394543 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3572172 62283054 ~ 62327772 (+)

Expression


Co-expression Network