LOC110522978 (r3hdm4)


Basic Information

Item Value
gene id LOC110522978
gene name r3hdm4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58747592 ~ 58776342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110522978
ATGCTCTCTATTTTCCCCAGCTTGATAGAGGAGCGCAAATGCAGCTCTCTGCCCAACTCCCCCGCCAAATGTGTGTCTTTGACCAAGAAGAAACAGTTTTTCATCAACCAGACCATATGCAACTCTGACCTCACACCCAGAGCCAAAGGCAAGAAGAACCAAAGGCGGCAGGAGAACAGTTGCTACCTTGCCAATCGTCTTGATAGAAATGAGTGCTCCAAAGATGAGGCAGAGGTATGCAGTGACTGCCCTCCCTTCAAACTTCACTGTGGTCTGCACCAATGGCAACTACGTGGATcaatGGAATGACTTCATGAACCGCTCTGGATAGGAGCAGGAGAAGCTGCAAGCCCTTCTGGAAGAGGCCAAGAGGAACAACTGCAACAAGCTCCTCAAGGaccagagagaggGCCCTGAACCTACCCGTCAAAAGAGCTCTGCAGCCGCTGAGTTAGTTGGTCAGGCCTTCTATCCAGCCCCTCAGCATCAGGACTTAGAGAGGTGGCAGCCCACACCGGCCCCTGTGACTGGAGCTGTTcagggggaggggaaggagacCACTGACTGGTGCATCACTTTCCCTTGA

Function

symbol description
r3hdm4 Predicted to enable nucleic acid binding activity. Orthologous to human R3HDM4 (R3H domain containing 4).

NR:

description
R3H domain-containing protein 4

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110522978 True 586 mRNA 0.53 5 58747592 58776342

Neighbor

gene id symbol gene type direction distance location
LOC110524162 LOC106613646 coding upstream 11600 58726531 ~ 58735992 (+)
LOC110524161 LOC106613992 coding upstream 36612 58699995 ~ 58710980 (+)
LOC110524157 LOC106613644 coding upstream 47700 58674258 ~ 58699892 (+)
LOC110524159 NA coding upstream 77618 58661910 ~ 58669975 (+)
LOC110524155 LOC106613642 coding upstream 90750 58647160 ~ 58656842 (+)
LOC110524164 LOC106613648 coding downstream 32228 58808570 ~ 58828505 (+)
LOC110524166 LOC100194687 coding downstream 66107 58842449 ~ 58849428 (+)
LOC110524168 LOC106613649 coding downstream 86727 58863069 ~ 58878412 (+)
LOC110522979 NA coding downstream 111872 58888214 ~ 58900154 (+)
LOC110524169 LOC106613650 coding downstream 135567 58911909 ~ 58936361 (+)
G420545 NA non-coding upstream 67728 58679586 ~ 58679864 (+)
LOC110524153 LOC106613641 non-coding upstream 104061 58620518 ~ 58646110 (+)
LOC110524154 NA non-coding upstream 127404 58579542 ~ 58620188 (+)
G420511 NA non-coding upstream 168972 58578104 ~ 58578620 (+)
G420606 NA non-coding downstream 26552 58802894 ~ 58803093 (+)
G420608 NA non-coding downstream 27640 58803982 ~ 58804208 (+)
G420610 NA non-coding downstream 28737 58805079 ~ 58805298 (+)
G420621 NA non-coding downstream 55046 58831388 ~ 58831587 (+)
G420622 NA non-coding downstream 56049 58832391 ~ 58832640 (+)
G420117 LOC100846954 other upstream 330816 58411240 ~ 58418268 (+)
G419452 NA other upstream 847944 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1380255 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1789427 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1822416 56923924 ~ 56925176 (+)
G420634 NA other downstream 166386 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 1917915 60694220 ~ 60695905 (+)
G423922 NA other downstream 2945195 61721537 ~ 61722024 (+)
G424079 NA other downstream 3329181 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3506810 62283054 ~ 62327772 (+)

Expression


Co-expression Network