LOC110524167 (LOC106613995)


Basic Information

Item Value
gene id LOC110524167
gene name LOC106613995
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58834262 ~ 58836111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051820.1
CAGCTTGTCATGGCACCAGGAATTGGATTCGGTCTCTGGAGCACATTCAGGCACGTCTCACACTGACCTATAGCAGACGTGGAGATCTCTCCATCACCCTCATTAGCCCGAAGAAGACAATCTCCAATTTACTCACAACCAGGCCCTACGAAAAAACGTCTGCAGGGTTCTCAGACTGGGCCTTCATGAGTACACACTGCTGGGATGAGGATCCCTCTGGATATTGGGTTCTACAGATAGAAAACAACGGAGATTCAAACAACAGAGGATTCCTGTTGAAATTTCAACTGGAGTTGCATGGGACAGCTGAACACATGATAGGCCGGCGCATGGAGAGAGCAGTGGTACAGCAGTGTGCAGTGAGGAACTCTGATGGCGGCTGTGAAGGCAGGCTTCTACATTATTCATTCCCTGAATTTAGTTTACAATGAAACAGTTGCACACACACTGTCATTTCACGTTCTGGAAGACATCTAGAAAATGTTACTAACCAAGCAAGTATCCTCTGTTTATAGAGTGCATATACCCACTGTACGTATTTGAGAACAGCTGCCTGATGTCCTGTCCACCTCACTACTATGTATCAAATGGAAACAGCACCCGCTCCTATCAGAGGTGCTTACCCTGCCATCGCAACTGCCTCACTTGTTTCGGCAAACAGGACACAAACTGTCTGGACTGCCCTCCATATTCCACCTTGGATTCTCGTCGCAGTACCTGTAGTTCCCCCGTCTACCCCTGGGACCACAAAGGTAAAATAACAAATGGCATGGATCGGACGGCAGCGGTTCTGGGTATTCTGATCGGAGGGCCGCTGGTGATTTTGTTTGTCATGTGGGCGATTGCATGGATGGTGAGCAGGTCGTTTCTACCACGTGGTGCTGCCAGGAACCAGGTGGACATCAGCACCAGTCATAGCAATGATGAGTCCAGGGATGTGGAGATGGTGGTATTCAGTATTACAGAAAGCCAGGCAGAGAACAGCGAGAGTACATCTACATTCACCAACATTCCCAATACTTCAAGAGAAACATGACTCACTTCAGTCAGCATAGAATTCATTATTGGCTAATTTCATGTTGACTAACAGAAACAGAAGAAACATTTTACAAATAGCTTTTATTGTTACTTCAGTATCATTCACAAACTTTTGGAtggataaaataaatatatttttaaga

Function

NR:

description
proprotein convertase subtilisin/kexin type 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051820.1 True 1181 mRNA 0.46 3 58834262 58836111

Neighbor

gene id symbol gene type direction distance location
LOC110524158 LOC106613645 coding downstream 158334 58671471 ~ 58675928 (-)
LOC110524152 LOC100194657 coding downstream 255651 58573258 ~ 58578611 (-)
LOC110524151 LOC106573894 coding downstream 266579 58546384 ~ 58567683 (-)
mast3b LOC106613636 coding downstream 359029 58416872 ~ 58475233 (-)
LOC110524144 LOC106613635 coding downstream 424942 58379780 ~ 58409320 (-)
gamt gamt coding upstream 15908 58852019 ~ 58856447 (-)
LOC118964628 NA coding upstream 146577 58982688 ~ 59001580 (-)
trnaa-ugc-13 NA coding upstream 190415 59026526 ~ 59026598 (-)
atp13a3 LOC106613657 coding upstream 219009 59055120 ~ 59115105 (-)
tmem44 tmem44 coding upstream 288970 59125081 ~ 59131011 (-)
G420921 LOC106613648 non-coding downstream 5692 58809034 ~ 58828570 (-)
G420924 LOC106613648 non-coding downstream 10760 58822575 ~ 58823502 (-)
G420894 LOC106613647 non-coding downstream 57585 58775981 ~ 58776677 (-)
G420879 NA non-coding downstream 80734 58751176 ~ 58753528 (-)
G420860 NA non-coding downstream 125029 58708782 ~ 58709233 (-)
G420948 LOC106573879 non-coding upstream 5474 58841585 ~ 58842095 (-)
G420951 NA non-coding upstream 28988 58865099 ~ 58865767 (-)
G420939 NA non-coding upstream 31295 58867406 ~ 58868675 (-)
G420932 NA non-coding upstream 32707 58868818 ~ 58870227 (-)
G420940 NA non-coding upstream 34264 58870375 ~ 58871526 (-)
G420421 NA other downstream 420119 58413128 ~ 58414143 (-)
G420193 NA other downstream 720202 58112387 ~ 58114060 (-)
G419714 NA other downstream 1128326 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 1208088 57612040 ~ 57627128 (-)
G419603 NA other downstream 1222695 57611059 ~ 57611567 (-)
G420982 LOC106613655 other upstream 189992 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 296759 59131152 ~ 59138429 (-)
G422347 NA other upstream 1264654 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2222883 61058949 ~ 61081864 (-)
G424474 NA other upstream 2780759 61616870 ~ 61617244 (-)

Expression


Co-expression Network