LOC110522980 (LOC106613653)


Basic Information

Item Value
gene id LOC110522980
gene name LOC106613653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58953813 ~ 58985589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977973.1
CTATTTACGTTACTGCATGCGACTCAACACCAAGAAAGGGTTTCAGCTTCACAGACATGTTCAGTTCAGATTTCGAACACATCGCAACACAACCGTTTTTAACGCTGCTCGTCTTATTATCTCCCGCAACATTACGTCATTCGCATGCGCCTCTGCCTGAAGACAACGAAGGACAGAGCATGGGATATCTTAGTAGAATACTTCTTCTTACTCAGTTGCTAACCTTACATCATATTTGGGGCATTATAGGGAACACCCTGCCGACCTGTGAACAGTCCCAGTTCAAGTGCAGAAACGGGAAGTGCATTCCCGGCCTCTGGGtgtgtgacagagacagagactgtgaGGATGGCAGTGATGAACTCCTCTGCAGGGAGCAGACCTGCCCAGGGTTTCTGTGTAAAGATGGAGGCTGCGTTGCCCAGAGTGCTCTCTGTGACAACACTCCGGACTGCCGTGATGGCTCTGACGAGTTAGAAGATACCTGTGGTTTGCGCCACTGTAAGAAGGATGAGTTTGCCTGCAGCAGTAGCCGATGTGTATCCCTCCGCTTCCGTTGTGATGGCACTGACGACTGTGGCGACGGCAGTGACGAAGCCTCCTGTCAGAACTGTACAGCCGACTTCTTCCTCTGTGAGAGGACAGGGAGCTGCGTTGCCAGGGCCAAGCTGTGCGACGGTCGGCCCGATTGCCCTGACGGGCAGGACGAGGGCGCTGACGCTTGTCCCTCCGGCCAGCACCCTGCCCCTCACACCTGCTCAATCTCTGAGTTCAGTTGTGGGGACGGCCAGTGTATGCCTCACTCCTGGAGATGTGACCACTCGCCTGACTGTGCTGACGCGAGGGATGAGGATGACTGTGatcagAATGAGTGTCTGGTGAACAATGGTGGCTGTTCTCACCTGTGTGTGGACCAGCCGATGGGCTTCCTCTGTGACTGCCCTGCTGGTATGAGGCTGGTGCATGACTCCCAGTGTGAGGaaATTGACATGTGTCTCGACTCTGACGTCTGCAATCAGCTATGTGTACATGTCAACGGGACTTTCTCCTGCGACTGCCATGAGGGCTACCTGATGAGCCCAAGGACAGGGGAGTGTAAGGCTAAAGGAGACGTGGCTCAGCTGGTGTTGAGCAGTTCTGAGGGGGTGCGCCGGGTCAACACTGCCGGTATGGAGTACAGGGAGATGGCTGCTCACTTACTGGGACCAGGGCCAATGGCTGCCCTGACTGCAAACCGCACTGTCTACTGGGCAAGGCCAGGACAAGGGTCCATCTACAGGATCTCCATGGATGGGAAGCCCCTGGAGCCTGTCCTGCTGTTGAAAGGCCATGGTGCTGTCCTGGGTCTGGCTGTGGACTGGATCCATGAGCTTCTCTACTGGACCAACGCTGATACTCACTCCATCGATGTGGCCCGTCTGGACGTCTCTGCACAACGCCTCCTGATAGGAGGGCTGGCCATGCCCACTGGAGTGGCTGTGGAACCCTTGTTGGGGTTTTTGTTCTGGGCAGAAGGTGGCAGCTCCCCCAGGATCGAGCGTGCTGGCCTGGATGGAGAAGGCAGGCTGCCACTAATCACCTCAGCCATATGGAACCCAGTCGCCATCTCTCTggACATGCCTCGACGACTCCTGTACTGGGTTGACTCAGGGATGCGCACCATCTCGAGGGTCGGGTTCGACGGGCAGCATCGCAAGACCGTGGTGGAGTCCAATGGATACCTGGACAGGCCCTTCGGATTGGCAGTGTTTGAGGGACATGTATACTGGAGTGAACAGGACACCCACTCCATATGTAGTGCTGACAAGCACAATGGCAGCCTCTTTAGAGTCATCCTGCCCAATATCGCTTCCCCAGGCGGCTTGGTTCTCATTCACCCGGTTCTTCAACCAAAAGGCCCTGCTGTGTGTGGAAATAACGGCGGAGTTTGTCTATATGAGTGTGAGCCAGACCTTTTCTCTGGAACAAGCTCTCCCAGCTTCACCTGCATTCCTCCAAAAGGGAGTAGCggtgatgatgttgatgGCCCAGCGCTGTCTGATACAACCTCTGCTGGAATCCTTTCGCTCATAGTTGTCCTGAGTGTGCTATTGGCAGgggtggtgttgtggtggtggagggaggagtgCAGGCCCTCCAGGACACTCGACCTCCAAGACTTCTCCCTGAAGGAGTCCCAGGACCCCCTCATCCAGGCACCAGCCAGAGGCATGGAGGTTTGTCCTGTCAAGGACACTTTGCTTAAGCTGGACTTGGACCATTACTGAGTGTCTTAAGTCACGTGTAAGAGTCACCGGTGTCCAGCTGTGCTCCCACCCCTCCCAGTGCCAGCAGTCCCTGGAGTCTCATCAGGTTATCTGGCCAAAGGGagtgagaagaagagaggaggcatCTTACAGCACTTCCCCTTGATGACCAGTGGTCCTCCCAGGGCCTCATTCAACCTCAATGTTGATTTCATTTGAGTTGTGGCTCATTTAAAGCCTGGATCAAGTACACCTCGGTTTCAGTGAAGGCTAAAAATGTACTTAAACAATTGACTTGAAAATTACTTGAGCAACTTTGCGTTTTCTAACTTGACTGGAGTTTTattggaattgaccccagccTTGGGGGTCCTGGAGCATGTCAGTGATTAGCTACAGATGTCCAGCCTATGAGATACTGTACCTCTCATGCATACACTTGAATTGTGACAACATCTGAATGTTTTTTTGCAATCGGTTGGCTAGTCTATATGTTCAAACTAATCCCCATatttcgtcagggcatggactctacaaggtgtcatcagcatttcacggtgatgctggcccatgttgacaccaatgcttcccacagttgttgcAAGTTGGCTGGATATAATTTGGGTGatggacaattcttgatacacactggaaactgttgtgtgaaaaacccagcagcgttgcatttCTTGACACTCAAATCGGCGCGccttgcacctactaccatatcccgttcaaagggACTTAAGtattttgtcttgccctttcATCCTCTGAagggcacacaaacacaatccatgtctcaagacttgaaaatgattctttaacctgtctcctctcattcatctacacagat
>XM_036977972.1
TTACGTTACTGCATGCGACTCAACACCAAGAAAGGGTTTCAGCTTCACAGACATGTTCAGTTCAGATTTCGAACACATCGCAACACAACCGTTTTTAACGCTGCTCGTCTTATTATCTCCCGCAACATTACGTCATTCGCATGCGCCTCTGCCTGAAGACAACGAAGGACAGAGCATGGGATATCTTAGTAGAATACTTCTTCTTACTCAGTTGCTAACCTTACATCATATTTGGGGCATTATAGGGAACACCCTGCCGACCTGTGAACAGTCCCAGTTCAAGTGCAGAAACGGGAAGTGCATTCCCGGCCTCTGGGtgtgtgacagagacagagactgtgaGGATGGCAGTGATGAACTCCTCTGCAGGGAGCAGACCTGCCCAGGGTTTCTGTGTAAAGATGGAGGCTGCGTTGCCCAGAGTGCTCTCTGTGACAACACTCCGGACTGCCGTGATGGCTCTGACGAGTTAGAAGATACCTGTGGTTTGCGCCACTGTAAGAAGGATGAGTTTGCCTGCAGCAGTAGCCGATGTGTATCCCTCCGCTTCCGTTGTGATGGCACTGACGACTGTGGCGACGGCAGTGACGAAGCCTCCTGTCAGAACTGTACAGCCGACTTCTTCCTCTGTGAGAGGACAGGGAGCTGCGTTGCCAGGGCCAAGCTGTGCGACGGTCGGCCCGATTGCCCTGACGGGCAGGACGAGGGCGCTGACGCTTGTCCCTCCGGCCAGCACCCTGCCCCTCACACCTGCTCAATCTCTGAGTTCAGTTGTGGGGACGGCCAGTGTATGCCTCACTCCTGGAGATGTGACCACTCGCCTGACTGTGCTGACGCGAGGGATGAGGATGACTGTGatcagAATGAGTGTCTGGTGAACAATGGTGGCTGTTCTCACCTGTGTGTGGACCAGCCGATGGGCTTCCTCTGTGACTGCCCTGCTGGTATGAGGCTGGTGCATGACTCCCAGTGTGAGGaaATTGACATGTGTCTCGACTCTGACGTCTGCAATCAGCTATGTGTACATGTCAACGGGACTTTCTCCTGCGACTGCCATGAGGGCTACCTGATGAGCCCAAGGACAGGGGAGTGTAAGGCTAAAGGAGACGTGGCTCAGCTGGTGTTGAGCAGTTCTGAGGGGGTGCGCCGGGTCAACACTGCCGGTATGGAGTACAGGGAGATGGCTGCTCACTTACTGGGACCAGGGCCAATGGCTGCCCTGACTGCAAACCGCACTGTCTACTGGGCAAGGCCAGGACAAGGGTCCATCTACAGGATCTCCATGGATGGGAAGCCCCTGGAGCCTGTCCTGCTGTTGAAAGGCCATGGTGCTGTCCTGGGTCTGGCTGTGGACTGGATCCATGAGCTTCTCTACTGGACCAACGCTGATACTCACTCCATCGATGTGGCCCGTCTGGACGTCTCTGCACAACGCCTCCTGATAGGAGGGCTGGCCATGCCCACTGGAGTGGCTGTGGAACCCTTGTTGGGGTTTTTGTTCTGGGCAGAAGGTGGCAGCTCCCCCAGGATCGAGCGTGCTGGCCTGGATGGAGAAGGCAGGCTGCCACTAATCACCTCAGCCATATGGAACCCAGTCGCCATCTCTCTggACATGCCTCGACGACTCCTGTACTGGGTTGACTCAGGGATGCGCACCATCTCGAGGGTCGGGTTCGACGGGCAGCATCGCAAGACCGTGGTGGAGTCCAATGGATACCTGGACAGGCCCTTCGGATTGGCAGTGTTTGAGGGACATGTATACTGGAGTGAACAGGACACCCACTCCATATGTAGTGCTGACAAGCACAATGGCAGCCTCTTTAGAGTCATCCTGCCCAATATCGCTTCCCCAGGCGGCTTGGTTCTCATTCACCCGGTTCTTCAACCAAAAGGCCCTGCTGTGTGTGGAAATAACGGCGGAGTTTGTCTATATGAGTGTGAGCCAGACCTTTTCTCTGGAACAAGCTCTCCCAGCTTCACCTGCATTCCTCCAAAAGGGAGTAGCggtgatgatgttgatgATACAGTCGTTTCTCACACTCTTCCAGGCCCAGCGCTGTCTGATACAACCTCTGCTGGAATCCTTTCGCTCATAGTTGTCCTGAGTGTGCTATTGGCAGgggtggtgttgtggtggtggagggaggagtgCAGGCCCTCCAGGACACTCGACCTCCAAGACTTCTCCCTGAAGGAGTCCCAGGACCCCCTCATCCAGGCACCAGCCAGAGGCATGGAGGTTTGTCCTGTCAAGGACACTTTGCTTAAGCTGGACTTGGACCATTACTGAGTGTCTTAAGTCACGTGTAAGAGTCACCGGTGTCCAGCTGTGCTCCCACCCCTCCCAGTGCCAGCAGTCCCTGGAGTCTCATCAGGTTATCTGGCCAAAGGGagtgagaagaagagaggaggcatCTTACAGCACTTCCCCTTGATGACCAGTGGTCCTCCCAGGGCCTCATTCAACCTCAATGTTGATTTCATTTGAGTTGTGGCTCATTTAAAGCCTGGATCAAGTACACCTCGGTTTCAGTGAAGGCTAAAAATGTACTTAAACAATTGACTTGAAAATTACTTGAGCAACTTTGCGTTTTCTAACTTGACTGGAGTTTTattggaattgaccccagccTTGGGGGTCCTGGAGCATGTCAGTGATTAGCTACAGATGTCCAGCCTATGAGATACTGTACCTCTCATGCATACACTTGAATTGTGACAACATCTGAATGTTTTTTTGCAATCGGTTGGCTAGTCTATATGTTCAAACTAATCCCCATatttcgtcagggcatggactctacaaggtgtcatcagcatttcacggtgatgctggcccatgttgacaccaatgcttcccacagttgttgcAAGTTGGCTGGATATAATTTGGGTGatggacaattcttgatacacactggaaactgttgtgtgaaaaacccagcagcgttgcatttCTTGACACTCAAATCGGCGCGccttgcacctactaccatatcccgttcaaagggACTTAAGtattttgtcttgccctttcATCCTCTGAagggcacacaaacacaatccatgtctcaagacttgaaaatgattctttaacctgtctcctctcattcatctacacagat
>XM_036977974.1
GCATGCGACTCAACACCAAGAAAGGGTTTCAGCTTCACAGACATGTTCAGTTCAGATTTCGAACACATCGCAACACAACCGTTTTTAACGCTGCTCGTCTTATTATCTCCCGCAACATTACGTCATTCGCATGCGCCTCTGCCTGAAGACAACGAAGGACAGAGCATGGGATATCTTAGTAGAATACTTCTTCTTACTCAGTTGCTAACCTTACATCATATTTGGGGGGAGCAGACCTGCCCAGGGTTTCTGTGTAAAGATGGAGGCTGCGTTGCCCAGAGTGCTCTCTGTGACAACACTCCGGACTGCCGTGATGGCTCTGACGAGTTAGAAGATACCTGTGGTTTGCGCCACTGTAAGAAGGATGAGTTTGCCTGCAGCAGTAGCCGATGTGTATCCCTCCGCTTCCGTTGTGATGGCACTGACGACTGTGGCGACGGCAGTGACGAAGCCTCCTGTCAGAACTGTACAGCCGACTTCTTCCTCTGTGAGAGGACAGGGAGCTGCGTTGCCAGGGCCAAGCTGTGCGACGGTCGGCCCGATTGCCCTGACGGGCAGGACGAGGGCGCTGACGCTTGTCCCTCCGGCCAGCACCCTGCCCCTCACACCTGCTCAATCTCTGAGTTCAGTTGTGGGGACGGCCAGTGTATGCCTCACTCCTGGAGATGTGACCACTCGCCTGACTGTGCTGACGCGAGGGATGAGGATGACTGTGatcagAATGAGTGTCTGGTGAACAATGGTGGCTGTTCTCACCTGTGTGTGGACCAGCCGATGGGCTTCCTCTGTGACTGCCCTGCTGGTATGAGGCTGGTGCATGACTCCCAGTGTGAGGaaATTGACATGTGTCTCGACTCTGACGTCTGCAATCAGCTATGTGTACATGTCAACGGGACTTTCTCCTGCGACTGCCATGAGGGCTACCTGATGAGCCCAAGGACAGGGGAGTGTAAGGCTAAAGGAGACGTGGCTCAGCTGGTGTTGAGCAGTTCTGAGGGGGTGCGCCGGGTCAACACTGCCGGTATGGAGTACAGGGAGATGGCTGCTCACTTACTGGGACCAGGGCCAATGGCTGCCCTGACTGCAAACCGCACTGTCTACTGGGCAAGGCCAGGACAAGGGTCCATCTACAGGATCTCCATGGATGGGAAGCCCCTGGAGCCTGTCCTGCTGTTGAAAGGCCATGGTGCTGTCCTGGGTCTGGCTGTGGACTGGATCCATGAGCTTCTCTACTGGACCAACGCTGATACTCACTCCATCGATGTGGCCCGTCTGGACGTCTCTGCACAACGCCTCCTGATAGGAGGGCTGGCCATGCCCACTGGAGTGGCTGTGGAACCCTTGTTGGGGTTTTTGTTCTGGGCAGAAGGTGGCAGCTCCCCCAGGATCGAGCGTGCTGGCCTGGATGGAGAAGGCAGGCTGCCACTAATCACCTCAGCCATATGGAACCCAGTCGCCATCTCTCTggACATGCCTCGACGACTCCTGTACTGGGTTGACTCAGGGATGCGCACCATCTCGAGGGTCGGGTTCGACGGGCAGCATCGCAAGACCGTGGTGGAGTCCAATGGATACCTGGACAGGCCCTTCGGATTGGCAGTGTTTGAGGGACATGTATACTGGAGTGAACAGGACACCCACTCCATATGTAGTGCTGACAAGCACAATGGCAGCCTCTTTAGAGTCATCCTGCCCAATATCGCTTCCCCAGGCGGCTTGGTTCTCATTCACCCGGTTCTTCAACCAAAAGGCCCTGCTGTGTGTGGAAATAACGGCGGAGTTTGTCTATATGAGTGTGAGCCAGACCTTTTCTCTGGAACAAGCTCTCCCAGCTTCACCTGCATTCCTCCAAAAGGGAGTAGCggtgatgatgttgatgATACAGTCGTTTCTCACACTCTTCCAGGCCCAGCGCTGTCTGATACAACCTCTGCTGGAATCCTTTCGCTCATAGTTGTCCTGAGTGTGCTATTGGCAGgggtggtgttgtggtggtggagggaggagtgCAGGCCCTCCAGGACACTCGACCTCCAAGACTTCTCCCTGAAGGAGTCCCAGGACCCCCTCATCCAGGCACCAGCCAGAGGCATGGAGGTTTGTCCTGTCAAGGACACTTTGCTTAAGCTGGACTTGGACCATTACTGAGTGTCTTAAGTCACGTGTAAGAGTCACCGGTGTCCAGCTGTGCTCCCACCCCTCCCAGTGCCAGCAGTCCCTGGAGTCTCATCAGGTTATCTGGCCAAAGGGagtgagaagaagagaggaggcatCTTACAGCACTTCCCCTTGATGACCAGTGGTCCTCCCAGGGCCTCATTCAACCTCAATGTTGATTTCATTTGAGTTGTGGCTCATTTAAAGCCTGGATCAAGTACACCTCGGTTTCAGTGAAGGCTAAAAATGTACTTAAACAATTGACTTGAAAATTACTTGAGCAACTTTGCGTTTTCTAACTTGACTGGAGTTTTattggaattgaccccagccTTGGGGGTCCTGGAGCATGTCAGTGATTAGCTACAGATGTCCAGCCTATGAGATACTGTACCTCTCATGCATACACTTGAATTGTGACAACATCTGAATGTTTTTTTGCAATCGGTTGGCTAGTCTATATGTTCAAACTAATCCCCATatttcgtcagggcatggactctacaaggtgtcatcagcatttcacggtgatgctggcccatgttgacaccaatgcttcccacagttgttgcAAGTTGGCTGGATATAATTTGGGTGatggacaattcttgatacacactggaaactgttgtgtgaaaaacccagcagcgttgcatttCTTGACACTCAAATCGGCGCGccttgcacctactaccatatcccgttcaaagggACTTAAGtattttgtcttgccctttcATCCTCTGAagggcacacaaacacaatccatgtctcaagacttgaaaatgattctttaacctgtctcctctcattcatctacacagat

Function

NR:

description
low-density lipoprotein receptor-related protein 8-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977973.1 False 3102 mRNA 0.53 15 58953813 58985589
XM_036977972.1 False 3125 mRNA 0.53 15 58953817 58985589
XM_036977974.1 True 2983 mRNA 0.53 14 58953827 58985589

Neighbor

gene id symbol gene type direction distance location
ndufa7 ndufa7 coding upstream 13346 58936825 ~ 58940467 (+)
LOC110524169 LOC106613650 coding upstream 17452 58911909 ~ 58936361 (+)
LOC110522979 NA coding upstream 53659 58888214 ~ 58900154 (+)
LOC110524168 LOC106613649 coding upstream 75401 58863069 ~ 58878412 (+)
LOC110524166 LOC100194687 coding upstream 104385 58842449 ~ 58849428 (+)
LOC110524171 LOC106613654 coding downstream 21744 59007333 ~ 59013082 (+)
LOC110524172 LOC106613655 coding downstream 40416 59026005 ~ 59036303 (+)
LOC110524173 LOC106613656 coding downstream 52798 59038387 ~ 59050166 (+)
fam43a fam43a coding downstream 153848 59139437 ~ 59141452 (+)
LOC110524179 NA coding downstream 181664 59167253 ~ 59169330 (+)
G420665 NA non-coding upstream 936 58952502 ~ 58952877 (+)
G420663 NA non-coding upstream 2479 58951093 ~ 58951334 (+)
G420659 NA non-coding upstream 6136 58947469 ~ 58947677 (+)
G420656 NA non-coding upstream 11173 58941606 ~ 58942640 (+)
G420642 NA non-coding upstream 56705 58896900 ~ 58897108 (+)
G421069 NA non-coding downstream 130897 59116486 ~ 59116704 (+)
G421080 NA non-coding downstream 136715 59122304 ~ 59122532 (+)
G421090 lsg1 non-coding downstream 145596 59131185 ~ 59133005 (+)
G421133 NA non-coding downstream 184444 59170033 ~ 59171379 (+)
G421188 NA non-coding downstream 247948 59233537 ~ 59237839 (+)
G420634 NA other upstream 9596 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 537037 58411240 ~ 58418268 (+)
G419452 NA other upstream 1054165 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1586476 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1995648 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 1708668 60694220 ~ 60695905 (+)
G423922 NA other downstream 2735948 61721537 ~ 61722024 (+)
G424079 NA other downstream 3119934 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3297563 62283054 ~ 62327772 (+)
G425224 NA other downstream 4059501 63045090 ~ 63051530 (+)

Expression


Co-expression Network