LOC118964628


Basic Information

Item Value
gene id LOC118964628
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58982688 ~ 59001580 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051821.1
GGCCTCCAGGTAATCGAGCTCAAAACTTGCGGACTTCCCCCCCAACACGTTCAAGAGGGAAATACATGTGTATACCCTGTAGCTGTAGAGGGAAGTGGGCAACATATTTACAAAAGGACTGCAGAGCCTGCCGTGAGCTGGAGAACTTGCTAGAGATAAAGCCCTTCCTCTATGTGGTTCATGCCAAAGCTCGTGGAGTGTGAGGTATTATACAAGTCTTTTCAATCCCACTAGTTAGTAGTGAATTATTGTGTCATAAGTACATTGTAATCAGTGTCATAAGTACATTGTTTCTTCGTAAGAAGATCACGTTCATTCTCACCCAATACATATATCAAATGGGGAGGGGCCAACCAGGAGAGTGCAGCCTGTACACTTGGGGAGGAAGTTGAACAGGCAAACGCCTTCATCTTGAAGATATACTGTATTTGGTGCAAATAGCTGTCGCAATACATGGAACTGGTTTGCCTGGGTGTAGCTTTGTGTATGTGGCTGTCAGTGAGGTTAAAGGATACATTTTAAAGTTGAAAAAACCCTGTCCTAGCACTTGTGTCAGCTACGTAGTCTAGATTTCAATGACTGGTTTGCGTTCTGCTTTAAATGAAAACTGCACTCGTCTCTGTAAATGTGACTTCTTCAACAGAGCACTGAACCAGCGCAGTTGGCGTTTCACCCATATGAGTGCTACCCTGAGCAAATCATTCCGTGAGACCAAGCAAAAACTTCTGAATGAAAAGGAGAGTCTTGAAGTTCTGAAGAACCTAATGTCTGTGAATGATGGCCCGGTAAGGCAGTGAGTCACTGATGTCCAGGAGTGGGAATCCCACGGACTCGTCTTGTTCATTGGCAGGGCTTACCTTGACAGGACAAACCTCCATGCCTCTGGCTGGTGCCTGGATGAGGGGGTCCTGGGACTCCTTCAGGGAGAAGTCTTGGAGGTCGAGTGTCCTGGAGGGCCTGcactcctccctccaccaccacaacaccacccCTGCCAATAGCACACTCAGGACAACTGGGCAGAAAATATAGACTGAAATATTGTCCAGAAAGGACCACATTGGACAGAAAGGGGCACACCTTATTGGACTAATAAGACATAATAAAGGCCTTAATGGCTACTTATATAGACACGTATAAACTACAAATGAGTGGTTATTATGTATACCTGAAAATAAAGTGTTACCGCTTTTTTTTTGCATATAAACCATAAGCTGCTATTTCTATAAACTCTAAGTACTGACACTTATACCCATATTTACATAAAATTGTCATTATTTGAATCTTTCTTTACACCTGAGCAATATCATCTCTCCAGTACAGTTCCATAGATGGCATGATATAAACAGACCGTAAGGGATCTAAATGTAATG

Function

NR:

description
low-density lipoprotein receptor-related protein 8-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051821.1 True 1373 mRNA 0.44 4 58982688 59001580

Neighbor

gene id symbol gene type direction distance location
gamt gamt coding downstream 126241 58852019 ~ 58856447 (-)
LOC110524167 LOC106613995 coding downstream 146577 58834262 ~ 58836111 (-)
LOC110524158 LOC106613645 coding downstream 306760 58671471 ~ 58675928 (-)
LOC110524152 LOC100194657 coding downstream 404077 58573258 ~ 58578611 (-)
LOC110524151 LOC106573894 coding downstream 415005 58546384 ~ 58567683 (-)
trnaa-ugc-13 NA coding upstream 24946 59026526 ~ 59026598 (-)
atp13a3 LOC106613657 coding upstream 53540 59055120 ~ 59115105 (-)
tmem44 tmem44 coding upstream 123501 59125081 ~ 59131011 (-)
lsg1 lsg1 coding upstream 129572 59131152 ~ 59138429 (-)
LOC110524182 LOC106613664 coding upstream 358306 59359886 ~ 59448197 (-)
G420992 NA non-coding downstream 32695 58949757 ~ 58949993 (-)
G420968 NA non-coding downstream 75344 58907063 ~ 58907344 (-)
G420964 NA non-coding downstream 79940 58899153 ~ 58902748 (-)
G420963 NA non-coding downstream 83803 58898437 ~ 58898885 (-)
G420956 NA non-coding downstream 99981 58882494 ~ 58882707 (-)
G421034 NA non-coding upstream 43790 59045370 ~ 59045647 (-)
G420981 NA non-coding upstream 46125 59047705 ~ 59053737 (-)
G421077 NA non-coding upstream 119480 59121060 ~ 59121285 (-)
G421079 NA non-coding upstream 120169 59121749 ~ 59122035 (-)
G421137 NA non-coding upstream 164793 59166373 ~ 59166782 (-)
G420421 NA other downstream 568545 58413128 ~ 58414143 (-)
G420193 NA other downstream 868628 58112387 ~ 58114060 (-)
G419714 NA other downstream 1276752 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 1356514 57612040 ~ 57627128 (-)
G419603 NA other downstream 1371121 57611059 ~ 57611567 (-)
G420982 LOC106613655 other upstream 24523 59026103 ~ 59036299 (-)
G422347 NA other upstream 1099185 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2057414 61058949 ~ 61081864 (-)
G424474 NA other upstream 2615290 61616870 ~ 61617244 (-)

Expression


Co-expression Network