LOC110524171 (LOC106613654)


Basic Information

Item Value
gene id LOC110524171
gene name LOC106613654
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59007333 ~ 59013082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603563.2
TGTATTTATAATTTTCAGAGTGAGCCAAGTCAACACCAGACGTTCTGTCGGAAGGGGGAAAAGAGCAACAAGGATGAGAAGGTCTTCTCGTTTGCTTGAGGTGACAGCTTTACTTGTAATAGCCATTCTGTGCCTGGtcatcattttttttaaagaggacATTCCCCCTGATGAACCCTctaaccatgtccagataaacaGAAAGGAATTAACCTACAAAAACAGACCTCAGAAACCAACCAGTGAGAGCGCAGGTGTTTTCAACTGGGGCCATTGTCAACGGAATGAGTCTGCCGCAAATGTGTCAGGATTTTCCTCTCTGCCTGGTCACATCCAAAACTTCCTCTTCTATCGTCATTGCCGCCACTTCCCAATGCTGCTGGACGTACCTGATAAATGTGGAGGCCCTCACAAGTCTGCTGACGTCTTCCTTCTGCTGGTCATAAAAAGCTCACCCGTGAATTACGACCGCCGTGAGGTACTACGGAAAACCTGGGCCAAGGAGAGACTGCAAAACGAAGTGTGGATCCGCAGGATTTTTCTCTCTGGAACCACAGGCACAGGCTTTGAGAAGCGCACGCTAAACAAGCTTTTACGACTGGAGAATCGTGAGCATAATGATATCTTGCAGTGGGACTTCAATGACTCCTTCTTCAACCTCACCCTGAAGCAAATCGTGTTCCTAGAGTGGATGGACAAGAACTGCCGCCAGGCCAGATTTCTCTTCAACGGTGACGATGATATCTTCGCGAACACAGATAACATGGTGGACTTCCTTCAGAGCCAAGAAAACAAAGATGGTGACAAGCACCTTTTTGCGGGCTATCTAATCCGCTATGTCGGACCCATTAGAGAGTCAGGGAGCAAATACTATGTCCCAGTCCAGGTTCAAGAGTCAGACTCGTATCCCCCTTATTGTGGTGGAGGGGGTTTCCTGCTCTCTGGATACACAGCTATGGTCATTTACAAAATGTCCCATACCATTCCCATTTTGCCAATTGACGACGTCTACATGGGAATGTGTCTGGAAAAGGCTGGTCTTAGGCCAGAGTCCCATTTTGGTGTCAAGACTGCTGGACTGCAAGTCCCCTCCCAAAAAGTGGACGCTTACGACCCTTGTTATTACAGGGAAATAATTCTAGTACACAGATTTCTACCCCATCAGATATATATTATGTGGCATGGAATACATGAACCTAACTTGAAATGTGGGAATTTGCAAGGTTCACTTTAACCCTTGAAATCAGACGCCTGCTCAGGTTCCTTTTTCCAATCTTTTTTTGCCAAGCAGTTACTGAGGTGTGCTCTCTCAAAGCAGGTGTTATTCCTGCAGATGTTTGAACAATGCCGGATCTATTGGCATATGGCAGGTTACTGTGAAATTTGACAGCTGGCACTGTTATTCATGTAAATGATTGACGACACATTGATttataatcccccccccccaaaaaaaaatgagTAGACGTGTATACCTGTCACTATGCATCACTTTTATTTATTATACTTTAAAGGGGAAATGAATGTCCATTTTGTTTAGCCGTTGATTCTCACTTTCTTTACACTCCTTGTCTGCTGTGTTTGACCTTTTTATCTGAACACTCTAGTGTAAAGCACAGTGCCTCAGGAACACGCCACCACCCGCTAAGCTCAGATAGGAAACTGTTGTGGTTCACTGCACAAAATACGGTTAGACAGGGCATTCTTTGTCTTTAGGCATTCTGTTTGTTCTTTGGAAATGTTTTCTTGAAAATGTTCTCTTTTTAAATTCATAATCAGAGGATGAACacctgtgtgtctttctgtgaaTCTAATGCTGACTGCATGTTTATAGAATATACTTTTTATCCATTTGTATAACAATTGTGAACAGATCAGTTTGTCCGTCGCACCCTAACACAGGTTGGAGACATAAAATGAACAGACCAGAGGCAGTGGTTGTGGGTTCCTTTTCTTTTGTATCATTTACTAAACGGGTCTTCTTTTGCCCGACAAAATAACTCCAGTACAGGGGACATCCAACGCTGAAACACCAGCGTAACAAAACAAGAACTAAGCTGTTGGCCTAAAGGCTGTGGCCAAAAAGAGAAAGCAAAACAATGAACAGCTACTCCTGTCTTAAACTATCGTCTATACGTAACAGTTACAGGAGGAACGCTTCTCTCTACCTAAAACCTGCCTAGGTTAACAGAGAGACAAGGTGCCCAGTCCCAGATGCTTTCTCTGAGGTAGGAAAAACCCACGCCCTCACAGGTCCTCGTCTCTACTCCCAATCCTCCCCCAGCTCCTCTCCTGGCACACCGATATAGGAGGAAGACTCAAAGCAATTAGTGGTCCCAGCTGTGTACTAATTGGCTTCACACTGAATACCTGTCCCCTGAGGAGGGTGCTGTCATTTAGTCTTCATCTGGCTGGTCGCTGAACTCTCACACAGTGTTGTTGCaaattgcatgtgtgatttattTGTCTTTAatcacacacacgaacacagacTTTTAATTGTCATTTCggtcatttgtgtggtattaaaaaatatttgtctaatgtctccagtcatgtaaaactATGTACAATTGTGTGAAATCATTTTATATAAAGGTCTATTCTTTCCCGGACCCGCATATAATagatgcatgcaatgctttataATAAAGGGGATTTTTGGGGGG

Function

NR:

description
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3-like

GO: NA

KEGG:

id description
K07970 B3GNT3; beta-1,3-N-acetylglucosaminyltransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603563.2 True 2669 mRNA 0.44 2 59007333 59013082

Neighbor

gene id symbol gene type direction distance location
LOC110522980 LOC106613653 coding upstream 21744 58953813 ~ 58985589 (+)
ndufa7 ndufa7 coding upstream 66866 58936825 ~ 58940467 (+)
LOC110524169 LOC106613650 coding upstream 70972 58911909 ~ 58936361 (+)
LOC110522979 NA coding upstream 107179 58888214 ~ 58900154 (+)
LOC110524168 LOC106613649 coding upstream 128921 58863069 ~ 58878412 (+)
LOC110524172 LOC106613655 coding downstream 12923 59026005 ~ 59036303 (+)
LOC110524173 LOC106613656 coding downstream 25305 59038387 ~ 59050166 (+)
fam43a fam43a coding downstream 126355 59139437 ~ 59141452 (+)
LOC110524179 NA coding downstream 154171 59167253 ~ 59169330 (+)
srsf11 LOC106613665 coding downstream 337697 59350779 ~ 59358665 (+)
G420665 NA non-coding upstream 54456 58952502 ~ 58952877 (+)
G420663 NA non-coding upstream 55999 58951093 ~ 58951334 (+)
G420659 NA non-coding upstream 59656 58947469 ~ 58947677 (+)
G420656 NA non-coding upstream 64693 58941606 ~ 58942640 (+)
G420642 NA non-coding upstream 110225 58896900 ~ 58897108 (+)
G421069 NA non-coding downstream 103404 59116486 ~ 59116704 (+)
G421080 NA non-coding downstream 109222 59122304 ~ 59122532 (+)
G421090 lsg1 non-coding downstream 118103 59131185 ~ 59133005 (+)
G421133 NA non-coding downstream 156951 59170033 ~ 59171379 (+)
G421188 NA non-coding downstream 220455 59233537 ~ 59237839 (+)
G420634 NA other upstream 63116 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 590557 58411240 ~ 58418268 (+)
G419452 NA other upstream 1107685 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1639996 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 2049168 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 1681175 60694220 ~ 60695905 (+)
G423922 NA other downstream 2708455 61721537 ~ 61722024 (+)
G424079 NA other downstream 3092441 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3270070 62283054 ~ 62327772 (+)
G425224 NA other downstream 4032008 63045090 ~ 63051530 (+)

Expression


Co-expression Network