LOC110524172 (LOC106613655)


Basic Information

Item Value
gene id LOC110524172
gene name LOC106613655
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59026005 ~ 59036303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603564.2
CCCGTCCAGCTGGTGGCGGTAATGCCCCATTAACATTGGATCCCAACCGCCGTTAACCCCCATGGAAGAAGAAGTACGTCATCGTCACGAAAGGGGGGCTGGCAGATGCCTTTTCGAAACAACAATAACCTGTTGTCGCTCAGCTGAAGAATAGGCCTAGTCTTAGGGATGCCGAAGAAGTTCCAGGGTGAGAACTCCAAGGCGGTCACTGCCAAGGCCCGCAAGGCAGAGGCCAAAGCAGTGGAAGACGCCCGCAAGAAGAAGGAGCTGGAGGATGCACTATGGCAGGAGAACGACAAACATGTCCTGAAGAAAGAACAGAGGAAGGATGACAAGGAGAAAAAGCGCCTTGAGGCCCTGGAGCGAAAGAAGGAGAACCAGCGGCTCTTAGATGAGGAGGCTGCAAAGATTAAGGGCAAGGCCaaggaggctgctgctgctgctgtggtggCAGGCAAAGTAACTCGGGCCCAGATTGAGGAGATGTTGCATGTCGAGCAGCAGCTACAACAGCAGGAGCAACCCAAAGAGAAAGAGAAGAGCCACCTGGAGACACCCCTGGAGGAGAACGTGAATCGCATCATTCCTGAGGAAGGTGTTGTGGAGGCTAGAACCATAGAGGATGCCATTGCCATGCTCAGCACGGCTGAAGAGCTCGACCGCCACCCAGAGCGCAGGGTGAAGGCAGCGTTCGCCGCGTTCGAGGATCTGAACATGCCCCTTCTTAAAAAAGAGAACCCCAACATGCGGCTGTCGCAGCTCAAGCAACAGCTGAAAAAGGAGTGGATGAAGTCGCCAGAGAACCCCCTGAACCAGCGCTTTGCCAACTACAACACAAAGTGAACCAACTCCAGCAGCAGCTAAAAAAACTGTTTACCTATGCACATTGGACCTTACAATGGAAGATGCCCCCAACCTATAATTATTCccccatttatgaatgtgttgcTGGAAAAGCTGCATTCATTCCCTAGGAAGGACCTCCGATGCAAGGAATCACCTTGGGACTTCCGCTTGTTTCGTTCCGATTTGACAAGGAAAAGCAAACTCCCAACCAATGTTCCTGATGATTTTATTTTACTGTGCATGTCCACTTGTGAAGCATCTCGGCAGTTTATGGATTTTATTCCCACTGTCAGTTTTTGGCACTTATGTTGAAAAGGGATTAAAGTAATTTATTTCAGTTCACAATACACTAACATATCTAATTCTTTCTGAGAATGAGACTACAGGTATGTGATCTGCACTCTTGCCTATCGTAATCGCCTCCATTAACCCCccaatgatgatgataataactCACGTAAGAAAATCATGACCAGAGCCAGTTGACTTGTTATGAACTGCCATTTTGGGCACCATTGGAAATGACCACCCCTTTCCCTATGATAAAGTGTATTGTGGCACCTGTTCCCCATCCTAACAAGGCCTTATTAGGTGCACCCACTCAATAAATCAATACTGTTGTTGCTAATCCTGGTATCATGCAATATTAGGTCTGAATCCTGCATCTGCTTTCAGGTTACATTGAATTGTATGGAGATTGTTATTGCTTTTTTGTAAGTGAAATTTGAAAAGACtacaaaaaaatatttcaaaTCTCAAATTCATGTAAATCTaaattatccccccccccccccaaaaaaaaatgtaatgcagGTTTACGTACCATTTTCTCACCTTCACGTTTGAGCGTTTATGTAGAAAGGCCATCTCATTTATTGAAAGCATACAGCTCACCACATCTCGTCAGTTGTGTTTTAGGAGCTGCAGCTAAGAAGTGTCTCCTAACGCCCACCACTTCTGTTTCAACAGCACAATCATTTAGCACAAGAGGGTTTTTAAAATTCACTGCATTTTGATCTACATTCATTTCGCCACTTAAATAGACTTTCAGACGTGTGCATATGCCTTACATTAGTGCTCGTTTTCAGCCAGGTTTCCGTCTGAAGAGGATACTGAAAGTGTTTAGCTGTGTTCTagttctctgtccttctcccaaAGTGCAGACAggcatttactgcactgctggagctagaaacaagtAATCTGTACGCGACTAAACTCTGATTTGAAGTGCACACATGTTCACTCCCTTTCATAGATTTAAAATGAATAGACGAGTGTAAGGAATACTTGCACAAATCCAGTGCTTTTAAACACAATGGAGTCAACAAGTGCACACTTACAGTAAAAAGGAAGGGAATTGGAATTCATCCATGTGACTCATCTTTTGTTCCCAGTGGCTCCTGAATTTGACTCTCATGCTATGCCACTGGATGACACTCAGCAGACTACACTCACATCCTCATCCATTTAGTTAATTGCTGATCTATAAGATATCTTATCAATTTTATATTTATAAGGTGGAATTGGCTGTTGGCATTTATACAAGAATACAGTATTGTTGTAGCCATGCCTTTTACTCTGCTACAATACTGTTATAGATGCCAATACCAGACAGGTGTAAGAAGTTActgtggaatatatatatatatatatatatatatagtcaaaACCCTCTTATCCAAGTAAATCTGCATAGGTAGTGTTTCTTTTTAGTTCAAATGAAAGTTGTAACTGAGAGGACGAACAATAAATCTCATTACCATATTTGCTG
>XM_036977975.1
tatattttttacattggttAATAGTCAATTGCCACGAATTCAGACTCTGTGAAATATTTTATTTGTTCATCtttgctagctaactttagcttagtagctagctaacttctatagctaacgttagctaaacagCGCGTTATGCAAGTTGGCCATTGGTAAATACAGAACTCGTGTGACTCAGCTGAAGAATAGGCCTAGTCTTAGGGATGCCGAAGAAGTTCCAGGGTGAGAACTCCAAGGCGGTCACTGCCAAGGCCCGCAAGGCAGAGGCCAAAGCAGTGGAAGACGCCCGCAAGAAGAAGGAGCTGGAGGATGCACTATGGCAGGAGAACGACAAACATGTCCTGAAGAAAGAACAGAGGAAGGATGACAAGGAGAAAAAGCGCCTTGAGGCCCTGGAGCGAAAGAAGGAGAACCAGCGGCTCTTAGATGAGGAGGCTGCAAAGATTAAGGGCAAGGCCaaggaggctgctgctgctgctgtggtggCAGGCAAAGTAACTCGGGCCCAGATTGAGGAGATGTTGCATGTCGAGCAGCAGCTACAACAGCAGGAGCAACCCAAAGAGAAAGAGAAGAGCCACCTGGAGACACCCCTGGAGGAGAACGTGAATCGCATCATTCCTGAGGAAGGTGTTGTGGAGGCTAGAACCATAGAGGATGCCATTGCCATGCTCAGCACGGCTGAAGAGCTCGACCGCCACCCAGAGCGCAGGGTGAAGGCAGCGTTCGCCGCGTTCGAGGATCTGAACATGCCCCTTCTTAAAAAAGAGAACCCCAACATGCGGCTGTCGCAGCTCAAGCAACAGCTGAAAAAGGAGTGGATGAAGTCGCCAGAGAACCCCCTGAACCAGCGCTTTGCCAACTACAACACAAAGTGAACCAACTCCAGCAGCAGCTAAAAAAACTGTTTACCTATGCACATTGGACCTTACAATGGAAGATGCCCCCAACCTATAATTATTCccccatttatgaatgtgttgcTGGAAAAGCTGCATTCATTCCCTAGGAAGGACCTCCGATGCAAGGAATCACCTTGGGACTTCCGCTTGTTTCGTTCCGATTTGACAAGGAAAAGCAAACTCCCAACCAATGTTCCTGATGATTTTATTTTACTGTGCATGTCCACTTGTGAAGCATCTCGGCAGTTTATGGATTTTATTCCCACTGTCAGTTTTTGGCACTTATGTTGAAAAGGGATTAAAGTAATTTATTTCAGTTCACAATACACTAACATATCTAATTCTTTCTGAGAATGAGACTACAGGTATGTGATCTGCACTCTTGCCTATCGTAATCGCCTCCATTAACCCCccaatgatgatgataataactCACGTAAGAAAATCATGACCAGAGCCAGTTGACTTGTTATGAACTGCCATTTTGGGCACCATTGGAAATGACCACCCCTTTCCCTATGATAAAGTGTATTGTGGCACCTGTTCCCCATCCTAACAAGGCCTTATTAGGTGCACCCACTCAATAAATCAATACTGTTGTTGCTAATCCTGGTATCATGCAATATTAGGTCTGAATCCTGCATCTGCTTTCAGGTTACATTGAATTGTATGGAGATTGTTATTGCTTTTTTGTAAGTGAAATTTGAAAAGACtacaaaaaaatatttcaaaTCTCAAATTCATGTAAATCTaaattatccccccccccccccaaaaaaaaatgtaatgcagGTTTACGTACCATTTTCTCACCTTCACGTTTGAGCGTTTATGTAGAAAGGCCATCTCATTTATTGAAAGCATACAGCTCACCACATCTCGTCAGTTGTGTTTTAGGAGCTGCAGCTAAGAAGTGTCTCCTAACGCCCACCACTTCTGTTTCAACAGCACAATCATTTAGCACAAGAGGGTTTTTAAAATTCACTGCATTTTGATCTACATTCATTTCGCCACTTAAATAGACTTTCAGACGTGTGCATATGCCTTACATTAGTGCTCGTTTTCAGCCAGGTTTCCGTCTGAAGAGGATACTGAAAGTGTTTAGCTGTGTTCTagttctctgtccttctcccaaAGTGCAGACAggcatttactgcactgctggagctagaaacaagtAATCTGTACGCGACTAAACTCTGATTTGAAGTGCACACATGTTCACTCCCTTTCATAGATTTAAAATGAATAGACGAGTGTAAGGAATACTTGCACAAATCCAGTGCTTTTAAACACAATGGAGTCAACAAGTGCACACTTACAGTAAAAAGGAAGGGAATTGGAATTCATCCATGTGACTCATCTTTTGTTCCCAGTGGCTCCTGAATTTGACTCTCATGCTATGCCACTGGATGACACTCAGCAGACTACACTCACATCCTCATCCATTTAGTTAATTGCTGATCTATAAGATATCTTATCAATTTTATATTTATAAGGTGGAATTGGCTGTTGGCATTTATACAAGAATACAGTATTGTTGTAGCCATGCCTTTTACTCTGCTACAATACTGTTATAGATGCCAATACCAGACAGGTGTAAGAAGTTActgtggaatatatatatatatatatatatatatagtcaaaACCCTCTTATCCAAGTAAATCTGCATAGGTAGTGTTTCTTTTTAGTTCAAATGAAAGTTGTAACTGAGAGGACGAACAATAAATCTCATTACCATATTTGCTG
>XM_021603565.2
gcggcatttttccatttttgggaaaggttgctggatcgaatccccgagctgacaaggtaaaaaatatgttgttctgcccctgagcaaggcagttagttaacccactgttccttgggcACCGAAGACGTTGATGTCCATTTAAGGCCCCAGCACCTCTCTGATTgaggttaaatgcagaagacacatttcagCTGAAGAATAGGCCTAGTCTTAGGGATGCCGAAGAAGTTCCAGGGTGAGAACTCCAAGGCGGTCACTGCCAAGGCCCGCAAGGCAGAGGCCAAAGCAGTGGAAGACGCCCGCAAGAAGAAGGAGCTGGAGGATGCACTATGGCAGGAGAACGACAAACATGTCCTGAAGAAAGAACAGAGGAAGGATGACAAGGAGAAAAAGCGCCTTGAGGCCCTGGAGCGAAAGAAGGAGAACCAGCGGCTCTTAGATGAGGAGGCTGCAAAGATTAAGGGCAAGGCCaaggaggctgctgctgctgctgtggtggCAGGCAAAGTAACTCGGGCCCAGATTGAGGAGATGTTGCATGTCGAGCAGCAGCTACAACAGCAGGAGCAACCCAAAGAGAAAGAGAAGAGCCACCTGGAGACACCCCTGGAGGAGAACGTGAATCGCATCATTCCTGAGGAAGGTGTTGTGGAGGCTAGAACCATAGAGGATGCCATTGCCATGCTCAGCACGGCTGAAGAGCTCGACCGCCACCCAGAGCGCAGGGTGAAGGCAGCGTTCGCCGCGTTCGAGGATCTGAACATGCCCCTTCTTAAAAAAGAGAACCCCAACATGCGGCTGTCGCAGCTCAAGCAACAGCTGAAAAAGGAGTGGATGAAGTCGCCAGAGAACCCCCTGAACCAGCGCTTTGCCAACTACAACACAAAGTGAACCAACTCCAGCAGCAGCTAAAAAAACTGTTTACCTATGCACATTGGACCTTACAATGGAAGATGCCCCCAACCTATAATTATTCccccatttatgaatgtgttgcTGGAAAAGCTGCATTCATTCCCTAGGAAGGACCTCCGATGCAAGGAATCACCTTGGGACTTCCGCTTGTTTCGTTCCGATTTGACAAGGAAAAGCAAACTCCCAACCAATGTTCCTGATGATTTTATTTTACTGTGCATGTCCACTTGTGAAGCATCTCGGCAGTTTATGGATTTTATTCCCACTGTCAGTTTTTGGCACTTATGTTGAAAAGGGATTAAAGTAATTTATTTCAGTTCACAATACACTAACATATCTAATTCTTTCTGAGAATGAGACTACAGGTATGTGATCTGCACTCTTGCCTATCGTAATCGCCTCCATTAACCCCccaatgatgatgataataactCACGTAAGAAAATCATGACCAGAGCCAGTTGACTTGTTATGAACTGCCATTTTGGGCACCATTGGAAATGACCACCCCTTTCCCTATGATAAAGTGTATTGTGGCACCTGTTCCCCATCCTAACAAGGCCTTATTAGGTGCACCCACTCAATAAATCAATACTGTTGTTGCTAATCCTGGTATCATGCAATATTAGGTCTGAATCCTGCATCTGCTTTCAGGTTACATTGAATTGTATGGAGATTGTTATTGCTTTTTTGTAAGTGAAATTTGAAAAGACtacaaaaaaatatttcaaaTCTCAAATTCATGTAAATCTaaattatccccccccccccccaaaaaaaaatgtaatgcagGTTTACGTACCATTTTCTCACCTTCACGTTTGAGCGTTTATGTAGAAAGGCCATCTCATTTATTGAAAGCATACAGCTCACCACATCTCGTCAGTTGTGTTTTAGGAGCTGCAGCTAAGAAGTGTCTCCTAACGCCCACCACTTCTGTTTCAACAGCACAATCATTTAGCACAAGAGGGTTTTTAAAATTCACTGCATTTTGATCTACATTCATTTCGCCACTTAAATAGACTTTCAGACGTGTGCATATGCCTTACATTAGTGCTCGTTTTCAGCCAGGTTTCCGTCTGAAGAGGATACTGAAAGTGTTTAGCTGTGTTCTagttctctgtccttctcccaaAGTGCAGACAggcatttactgcactgctggagctagaaacaagtAATCTGTACGCGACTAAACTCTGATTTGAAGTGCACACATGTTCACTCCCTTTCATAGATTTAAAATGAATAGACGAGTGTAAGGAATACTTGCACAAATCCAGTGCTTTTAAACACAATGGAGTCAACAAGTGCACACTTACAGTAAAAAGGAAGGGAATTGGAATTCATCCATGTGACTCATCTTTTGTTCCCAGTGGCTCCTGAATTTGACTCTCATGCTATGCCACTGGATGACACTCAGCAGACTACACTCACATCCTCATCCATTTAGTTAATTGCTGATCTATAAGATATCTTATCAATTTTATATTTATAAGGTGGAATTGGCTGTTGGCATTTATACAAGAATACAGTATTGTTGTAGCCATGCCTTTTACTCTGCTACAATACTGTTATAGATGCCAATACCAGACAGGTGTAAGAAGTTActgtggaatatatatatatatatatatatatatagtcaaaACCCTCTTATCCAAGTAAATCTGCATAGGTAGTGTTTCTTTTTAGTTCAAATGAAAGTTGTAACTGAGAGGACGAACAATAAATCTCATTACCATATTTGCTG

Function

NR:

description
coiled-coil domain-containing protein 124-like

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0030496 midbody cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603564.2 False 2620 mRNA 0.44 5 59026005 59036303
XM_036977975.1 False 2658 mRNA 0.43 5 59026177 59036303
XM_021603565.2 True 2668 mRNA 0.43 5 59031464 59036303

Neighbor

gene id symbol gene type direction distance location
LOC110524171 LOC106613654 coding upstream 12923 59007333 ~ 59013082 (+)
LOC110522980 LOC106613653 coding upstream 40416 58953813 ~ 58985589 (+)
ndufa7 ndufa7 coding upstream 85538 58936825 ~ 58940467 (+)
LOC110524169 LOC106613650 coding upstream 89644 58911909 ~ 58936361 (+)
LOC110522979 NA coding upstream 125851 58888214 ~ 58900154 (+)
LOC110524173 LOC106613656 coding downstream 2084 59038387 ~ 59050166 (+)
fam43a fam43a coding downstream 103134 59139437 ~ 59141452 (+)
LOC110524179 NA coding downstream 130950 59167253 ~ 59169330 (+)
srsf11 LOC106613665 coding downstream 314476 59350779 ~ 59358665 (+)
LOC110524183 cgl coding downstream 420061 59456364 ~ 59463907 (+)
G420665 NA non-coding upstream 73128 58952502 ~ 58952877 (+)
G420663 NA non-coding upstream 74671 58951093 ~ 58951334 (+)
G420659 NA non-coding upstream 78328 58947469 ~ 58947677 (+)
G420656 NA non-coding upstream 83365 58941606 ~ 58942640 (+)
G420642 NA non-coding upstream 128897 58896900 ~ 58897108 (+)
G421069 NA non-coding downstream 80183 59116486 ~ 59116704 (+)
G421080 NA non-coding downstream 86001 59122304 ~ 59122532 (+)
G421090 lsg1 non-coding downstream 94882 59131185 ~ 59133005 (+)
G421133 NA non-coding downstream 133730 59170033 ~ 59171379 (+)
G421188 NA non-coding downstream 197234 59233537 ~ 59237839 (+)
G420634 NA other upstream 81788 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 609229 58411240 ~ 58418268 (+)
G419452 NA other upstream 1126357 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1658668 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 2067840 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 1657954 60694220 ~ 60695905 (+)
G423922 NA other downstream 2685234 61721537 ~ 61722024 (+)
G424079 NA other downstream 3069220 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3246849 62283054 ~ 62327772 (+)
G425224 NA other downstream 4008787 63045090 ~ 63051530 (+)

Expression


Co-expression Network