LOC110524173 (LOC106613656)


Basic Information

Item Value
gene id LOC110524173
gene name LOC106613656
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59038387 ~ 59050166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603566.2
GGCTACGGGGGTCTAGTCAGTTATTTCTCATGCTTTGGGTCGATAGAGCAGAGAAAAGTAATAAATGGGAGATTTTTTCTCCTTAAAGAGTCATACATGTATTAAGCAAGCAAAGAGAGGGTCTGATAGTTGTTCAGTTTAAATGCACAATATTGTGAACTGCATTTAACCAGTTCCTTGTGGAGTTTCTTGAATATTATGTAGTCGTTTGATAAATTAGGCTAGGTTTCTTGTCCCGGGGGCAAGTATCTGCGGTGCATTAGGACACTGTTAGACGGAAATGTAAAATCAATTGAATAATATGGGATTCTAATAAGTTTCTAAAATAAATAGTACTGTGGATGTTTTACCGTCACCACATTCTACAAGCTCAGTCGGAAAATACACAAGGCTAAATAATGACAAAGGTTAGCGTAcacacaaatgtttttttatattgTATATTCAACATTGATAACTCAGTTATGGTTGACAATATAGGTTTATATATGTCCTTAGTGCCTACATCCGTAGCAATGGTGATATCCCTGTTTGAGGAAGATTCCTATCAGAGGGGCTCATCTGGTTTTGACAGGAGCTCTCCAGTCTCACTTTGGGAGACTGTTATACACATGTCTCCTAAAAATGTTTTATCTGTTAGAACTTCTATGTTTGACTTGGATCTTTGTTAGCTTTTGCCGTAAAATGTAGAGCATGTTGTTCACTTAAAATGATGTCTTATTGATCAGATACTTTACAGCTTTTAAGAGGGAGTAGTGTCAATGTCTTTTGTATAGTATTCCTTCATGTTTCCTCTGCTTTCTTACAGATTATTTTTGTGTGAACCCAACGCTCTTTTAGCTGGATGACTGTAATACACCATGAATATGGATGCAGCAACCGGCATAACCTGAGGAAATAGGTTATTAATAATATTATGGACTGAATCTTATTTTTGTTCTTCAAAAAATGATCAACAATGCATTGGCTATTGCACATGGTTATACCAACATAAGCAGTTGGGTTGAAAATGCCAAACATTTTCATTTGAATCTGGATTCCTTCCTAGCAAAGTCTTTGCAGTTCATCAATGTAAACAGTGTTACAAGTGACAAGATTTTCCCATTAAGTTCATGTTCAACTAACTTGCCAGCATCACCGTTTTTTCTAAATTCATAAAATTATTCAACAATACTTAGTTAACTAACAAAAACTGAATGTTGATTAAAAAGACAGTTAAAAACAactaaatatgaataaaatataCAACATGTACAGGAAACATTAAGTTAAGCTGCTATCGGATTGTGGGGCACCCCCCAAGTCGGTGCTACACATTGGTAGTACGGAGgagtagctagccagctacttacaGAGTCCATACGGGGAGGCTGAGGACGCCGGGGACAGCGAGCTGTGGTAAAGGCTCCGGAAAAGTCTCGGACTGACTCTGATATGACCACCGACCTCCCTTGCTGTGACCAAaatgctccctccatcccttcaccgCTCAGACTGTTCAACCTCCATTCTTGCCTCAACTCCCTGACTTTTTGATCTTCTTGtatcttgttttgttcattgaAATTTGGTTCCTTGTATGTGTTACTGCAATTCAGCTTTTAGCTGCCATAGTACAcaggaaattaaataaataattgtcaTCATCATACATTATGAGGCTGGTTCTGGTCAAACCCACCAATGCAACACGTCGGCTCGATTCAACAGGAGACGCTTGCAACGACCAAGACCCGGATCACTGCAACTCTCGAGGGCAGTCTCTACCAGACAAAGCCCCTGAGGTCATGCAGTATCGCTACTCTGGAACTGCCCTCCAGCCCCAAATGTCAATACCAGAGCAGAGCAATAACAGCATTTCCACTTCCACTTCTCCGCCACAGGCTACTCCAAATGGAGTCGCTCCACCACGGAAATCTCCACCATTAAAAACTACACTGtcaaaactgagcaatcaagaTCTCCTGCTCTTTTGTAGCCAGGTGGGTGGTACTCTTGAACTGCAGCGTGAAAGCCCACTGTTGGCTGAGTGGCATGGGACCACGGTGGGACATCCTGATGCGGACTGTGGCTCTGTTTGCTATTCTCCTAGTACAAAACATGGATCAGAGGTGGCCGGTTTCCAGCCACAATCAAAGCAGGGCTTCTTGAAGGACTGCCTCTCCACATTCTCCAAGAAGGGAACTCCTCCTTCTCTACAGTATACCCACTCCTATCCTCAGAACTCCCTGGTGTCATCGTCATCCCGGTTTTTCAGGCAGAAACCAAGTCAAGAGGATCCCTCAACAGGGACTGTCAATCCCGAGAAGGATAATTTCACATCCCGATGCAGAGGAGAAGACGGGCTGAAGGAGTATAATCAATGGCAGCAGCAGACCCATAATCGTTTCAAGATTAAAGAGCATAACCTACCACCAGTCTCGACTACTGAAAAAACAGAGCCTTCACTGAATATACCTCTGAATGGCAATGAGTCAAGTAAAGTTAGGCAGCTCTTGGTTTTGTCTCAATCTCAGGACCAACAGAAACTTCCCTTAGATACACAACACCAATGGATGCTAGGAAACGGTTTACCTAGCTGCTGTGCCAATGAGTGTGGAGTGCATTGTGGAAGCCAACAACCTTACTTAAACCAGCAACTACAGCAACACCCTCAAAGGCAGCATTGTTGTGACCATCTTAGCATTCTAAAATGCCATCAGTGTTCTCTCTACCCATCCAGCAGCAGCCCACGAGGGAAGAATTCATTCCCGGCTACTAGCGACAAAAGCAGTGCTCACTCCTCTTCCAGTAGCCAGCGGTGGCAGGAGAACCATCAACTAGAGGGAGAAGGGCAACGACAAGGGGAGCAACAGGTACATCCTCATACCAAAAAGGTTGGCCATGTTGGTTCAACGCCTTCCCTGTCCAAGAGCAGTAGCCCACTCCCTCCCGACACAGTAGTGACAAGCGCTAAATACAATGGGGATGTTGGGAGACCCCTGAGCAGCTTAGGAGCTTCGCCACCCAACCTTTCAGAGCTGGACTCAGCAAGACAAGAGCCCCTCCAGACTCTTCACAGGTCCGTCCTGGAGGAGGTGTTCTCCAAAGGCCTCAGTGAGGACAATAGTAAGGGCAACAGCGAGGGAGGAGGAGACGCGCCACAGAAGAGGACTAAGGACATTGGCTACAGATTGGGCCAGCGTAGAGCGCTATTTGGAAAGCGCAAACAGCTGAGCGACTATGCCTTGATTTTCGGGATGTTTGGGATTGTTGTCATGGTGACGGAGACGGAACTGTCCTGGGGGGTTTACACGAAGGAATCATCATACTCATTTGCTCTGAAATGCCTCGTCAGCCTTTCAACTGCTGTATTGCTTGGCCTCATTGTGATGTACCATGCACGGGAAATACAGctCTTCATGGTGGACAATGCAGCTGACGACTGGAGGATTGCTATGACATATGAGCGGATCTTCCTGGTTGTGCTGGAGCTGCTGGTCTGTGCCATCCACCCCATCCCGGGCCAGTACATCTTCACCTGGACAGCCCGGCTGGCCTTCACCTACCCACACTCATTGACCAATGCCGACGTGGACCTCGTCCTCTCCATCCCCATGTTCCTCAGGCTCTACCTAATCGGTCGCGTCATGCTGCTGCACAGCAAGCTTTTCACGGATGCCTCGTCACGCAGCATCGGCGCCCTCAACAAGATCAACTTCAACACGCGGTTCGTCATGAAGACCCTCATGACCATCTGCCCCGGCACGGTGCTGCTGGTCTTCAGCGTCTCTTGTTGGATCATCGCAGCGTGGACGGTGCGTGTATGTGAGAGGTATCATGACACACAGGAAGTGACTAATAACTTCCTTGGGGCCATGTGGCTCATCTCTATCACCTTTCTCTCCATTGGTTATGGAGACATGGTCCCTCACACTTACTGTGGAAAGGGTGTGTGTCTGCTGACTGGAATCATGGGGGCTGGCTGCACTGCCCTGGTGGTTGCTGTAGTTGCCAGGAAGTCTGAGTTGACCAGAGCTGAGAAGCATGTTCACAACTTTATGATGGACACTCAGCTCTATAAACGAGTGAAAAACACAGCTGCCAATGTACTCAGAGAGACATGGCTTATCTACAAACACACCAAGTTAGTCAAGAAGATTGATCACGCCAGGGTACGCAAACATCAGCGCAAATTTCTGCAAGCCATTCACCAACTGCGCAGAGTCAAACTGGAACAGATGAAACTCACCGACCAGGCTAACACACTTGTGGATCTAGCCAAGACTCAGAACATGATGTACgacctggtgtctgacctgcaGCTGCGCAGCGAGGAGCTGGATAGGAGGATTGGTAGTTTGGACGACAAACTGGACTCCATCCTAGTCAATCTGCAGGCCCTACCCAGCCTGCTCTCCCAAGCGGTCACACAGCAGCACAAGGACTTCCTGGATGGCTTGGCCCACCGTGTACGGAAAGCCTCGTCGGAATCGGAGCTTCACTGGGTTCCCGCTAGGTGCCAACGGTCCCTTTCCACTGCACCACAGACCATTCCTTACAGCTGACAGCCTAGCCACATTTCCACGATTGTGACCTTAAATGGATTTATCCTGGATTGCCAGTCTGTGTACCTGGGCCATTCTTGAATAGAGGTGGCATTTAGGCATGGCATTTTAGGAAAAAGTTACTTTTTTGTGCAGTCCCCCCAAAAAGGGAAAAATGCTAGTCTTAATAAAATCCCATTACACCATCGTGCTAGGGTGGCTAATGCTGCTCCCGTATTAGCCACCCTAACTATTTCCCGCTACGTTACCTGCGTTGGGACACCAAAGACCAGACGACATAATTTGGCAAAACTTGGGGCTGTCCCATTAAATTCTAAACGAAGCTTCAGATTTATACCCCGTGACGTATCTGGGTTTCCCCTTGTCTGTGGTGTAACTGCCTGCATTATACCTGTCGAATCAGTGAGCTGCTTTTGTAGTAGTCATGAAACCACACCCGCTTTAGAAGTTTAGAACGAGAAACTgcaggctatatagaaataatgacaattacatttAAAATGATTAAATATCAAGGATTTATCAGACTAAATCGGTGTACATTACATCACACATTCCAGTGTTTGAACTTGTAACAGAAGCATGGAATTTCTACTCAGTTCATTCCATGGCAATGTCCGCGATAGATAACGTCAAGAGCCACTTGTAGATTTGACAGGTCTAACATTACACATCTGACACCGCCTAAACAAAAGCAGTGAAAAGCCACATATGCATTTGTCAGCTAAATGTGGGTTACCGCTGATCTGATTGCATCTTGGCCTAAGAGAGTACCaagagtcataatacccataaaacctagtggtcaaacagggaaatggttccaaatgTTTTTTCCACCATTACATTTTTCCCCATAGTTGATTTGAGAAACACTTCAAATTAGGGTTGCGTTCCATgcaggcttaccctggcgtgacattttgataaccatgtaaatctctctaggacaaggtgacatCCATATATTCGCCTGTATTTACCTCCCCAAAATTAAaagctaattagctgctaatgtggctattataaagaactacaaatgccataatgatctggacgagactgccgaatcgaggcaaaggtaagaatctctggattaacgaTGTGATGTttgctaaatgtagtaatgaataaataggctacatttctttaaaaattGACAATCTGtaaactgtcttgtgcaagttttacaTTGGACAATATAGGGATTTGTAGTTTGCGTGGGAAAAATGAATGTTGgtaaaacgattggaaccattttcctgttagaccactaggttttatgggtattctGACACACTGTGGGGCTCTAGTATGGCCGGGATTCAATGCGATTGCGCTTTGTCAGCAACATACCTTTTAAACATACCTTTTAAAGGCGCATGTGTTCCTGCATTCATGGAATCCGCATCACGGAGGTATAATAAGAACAGTCTGCGTTCATGGTAGATGCTGCATATGTCCGCTCAATCGCAAACTACCTGTAAATGGCACATTGTCGACAAAGCGCGATTGGATTAAATCCCGGACTAAatttttttgttttactataaagtagtcaaacatgtttttttgaagaccacatttattgaaaagacaatcaaaagaaatctaAAGAAATTAGAAACAATCCTTAGTAAAGAAATCATATATATAAATTACAAGCAATCTACATCTctgcaacaaaaaacaaaaacatttccagAGAAGAATCTTACTGAGGGTTGGGAGATTAGATTTTGTGGCAACAAACAAAGACAGAAAATTTGAATAAAATGTTAACCAACAGGCTTTGTTTTGCATTCAGTTAGGTATTAATTTTATTATAATTCTCTATATGTAACAAATACACACATTTCCCTGAGGAAACAATTCCACTGGAAGTTCTACAGACTCAGTGGCTGATATGTTCTAAATGCCTCAATGGTTCGTTTCAAACACTTAATAAAAAAAACAGGTGATTACAGATGTCAACAACTGGTATAATGTACCTTTTAAGAGCATAGAGTTTCAGCATACACTTCATTGCTATGATATAGCCGTATCTGGGTAAAATATCATTTATCAGAATAACAATTTGTAAGTTTTAGGGTTATCATTATTGATTCAAAGTTGAAGCATTAAGGTGCATGGTTATGACAGTTGAGAGAATCATTCCCCTAGCAGCAAAACAATCCTCTCTAGAGGAGAGGGGTTGTGATATCCACAGCAATGCACACTCTTCAGCCTGTACATTGTGATTTTACATACAGACTGTGTATAAAAACTCAAAGCATCATTTACATATTTTAGGTGCCAGGTgctgaaatgaacattcaacTAAAGATTGTCAGAATATTTCTGCCCAGAAACAATATTTGTCAAACTGAGGTGCcaatacaatgccttcagaaagtattcacacccatttactttttacacatttttgttgGAGTGGGAGTTTTTGGTcaacaatccacacacaatactcttgtcaaagtggaagaaaaattataTATTTATGAAAAATAGAACACATAtttcttgattagataagtattcaataaatgttagaatcaccttcggcagcaattacagctgtgagtgttttggggtaagtctaagagctttgcatacctggCTTGTACAATATTAGCTTATTATGCcatttaaaattcttcaagctctgtcaaattggttgttgatgattgctggacagccattttcaagtcctgccatagattttcaagcagatttaagtcaaaactgtaactagtccaatcaggaacattcaatgttgtcttggtaagcaactgcagtgtatatttggctttgtttttttaggttattgttgACAGGTGAATTTGTCTACCAGGAAAGCaaatcaggttttcctctaggatttttcctgtgcttagctctagtCCATTTATCTTGATCTGAATTAACTCCCGGTCTTcaccaatgacaagcataccctaacatgatgcagccaccaccatgcttgaaaatatgaagtgtggtactcagtgatgtgctgGATTTTGTACCAAACAAAACACTTTGTATATAGATCAAAAAGTTCTTTACCAAGTGTTTTGCAGTATTgcttcagtgccttgttgcaaacaggatgtatgtttttgaatgtttttattctgtacaggcttccttcttttcactctgtcaattaagttagtattgttgagtaactacaatgttgttgatccatcctcagttctcccatcacagccattaaactctaacaaTTTAAAAAATCAGTATTGGTCTCATggcgaaatccctgagcggttttccttcctctccggctacAGAGATAGAAAGAAcacctgcatctttgtagtgactgggtgtatttatacaccatccaaagtgtaattaataacttcaccacccTCAAATATTGTCTGCTTTTTGTTTTCTACCAATAGgcgcccttctttgcgaggcattggaaaacctccctggtctttgtggttgtatCTGTGCTTGAAAATTACTTTTGAACTGAGGGACCttccagataattgtatgtgtggggtagtcattcaacaataatgttaaccactattattgcatGCAActtaagcacatttgtactcctgTACGTATTTAGGCTCGCCATATGAAATGGGTTGAATAGTtggctcaagacatttcagattttcatttttaattaatttgtcaaATAAATtctaaaaaacaacattttacattatggggtattgtgtgtagaagtAAAGGGGTgggactttctgaaggcactggataTTATATGGAATCCCTTATTTCAAATCATTAGATTAATAGTAACTGTTTTCAGAGTACTGACAAGATATATTCCTCACGTGACTAGATATTGGTCGTAGGGCAAGGAGTTTCACACCTCACCAAGCAACATTCCAGGCTTTAAAAGTATAACTACAGCCCAGTTTTTCCTGGTTAGGTCACAAGGTCAGAAATAACTTCTGGCCCTAGACAATCGCACTTCATCATTGGCTTAAATAATAATTATAGAAATGCCCAATAGAATCATGT

Function

NR:

description
small conductance calcium-activated potassium channel protein 1-like isoform X1

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG:

id description
K04942 KCNN1, KCA2.1; potassium intermediate/small conductance calcium-activated channel subfamily N member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603566.2 True 8585 mRNA 0.42 8 59038387 59050166

Neighbor

gene id symbol gene type direction distance location
LOC110524172 LOC106613655 coding upstream 2084 59026005 ~ 59036303 (+)
LOC110524171 LOC106613654 coding upstream 25305 59007333 ~ 59013082 (+)
LOC110522980 LOC106613653 coding upstream 52798 58953813 ~ 58985589 (+)
ndufa7 ndufa7 coding upstream 97920 58936825 ~ 58940467 (+)
LOC110524169 LOC106613650 coding upstream 102026 58911909 ~ 58936361 (+)
fam43a fam43a coding downstream 89271 59139437 ~ 59141452 (+)
LOC110524179 NA coding downstream 117087 59167253 ~ 59169330 (+)
srsf11 LOC106613665 coding downstream 300613 59350779 ~ 59358665 (+)
LOC110524183 cgl coding downstream 406198 59456364 ~ 59463907 (+)
LOC110524186 LOC106613996 coding downstream 540894 59591060 ~ 59595336 (+)
G420665 NA non-coding upstream 85510 58952502 ~ 58952877 (+)
G420663 NA non-coding upstream 87053 58951093 ~ 58951334 (+)
G420659 NA non-coding upstream 90710 58947469 ~ 58947677 (+)
G420656 NA non-coding upstream 95747 58941606 ~ 58942640 (+)
G420642 NA non-coding upstream 141279 58896900 ~ 58897108 (+)
G421069 NA non-coding downstream 66320 59116486 ~ 59116704 (+)
G421080 NA non-coding downstream 72138 59122304 ~ 59122532 (+)
G421090 lsg1 non-coding downstream 81019 59131185 ~ 59133005 (+)
G421133 NA non-coding downstream 119867 59170033 ~ 59171379 (+)
G421188 NA non-coding downstream 183371 59233537 ~ 59237839 (+)
G420634 NA other upstream 94170 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 621611 58411240 ~ 58418268 (+)
G419452 NA other upstream 1138739 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1671050 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 2080222 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 1644091 60694220 ~ 60695905 (+)
G423922 NA other downstream 2671371 61721537 ~ 61722024 (+)
G424079 NA other downstream 3055357 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3232986 62283054 ~ 62327772 (+)
G425224 NA other downstream 3994924 63045090 ~ 63051530 (+)

Expression


Co-expression Network