Gene
RNA
| Item | Value |
|---|---|
| gene id | lsg1 |
| gene name | lsg1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 59131152 ~ 59138429 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lsg1 | Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in ribosomal subunit export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in Cajal body and endoplasmic reticulum. Predicted to be active in cytosol. Is expressed in eye; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human LSG1 (large 60S subunit nuclear export GTPase 1). |
| description |
|---|
| large subunit GTPase 1 homolog |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021603571.2 | False | 2667 | mRNA | 0.49 | 14 | 59131152 | 59138429 |
| TU477230 | True | 1725 | TUCP | 0.51 | 8 | 59132870 | 59138257 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tmem44 | tmem44 | coding | downstream | 141 | 59125081 ~ 59131011 (-) |
| atp13a3 | LOC106613657 | coding | downstream | 16047 | 59055120 ~ 59115105 (-) |
| trnaa-ugc-13 | NA | coding | downstream | 104554 | 59026526 ~ 59026598 (-) |
| LOC118964628 | NA | coding | downstream | 129572 | 58982688 ~ 59001580 (-) |
| gamt | gamt | coding | downstream | 274705 | 58852019 ~ 58856447 (-) |
| LOC110524182 | LOC106613664 | coding | upstream | 221457 | 59359886 ~ 59448197 (-) |
| LOC110524184 | LOC106613666 | coding | upstream | 330351 | 59468780 ~ 59563676 (-) |
| LOC118964629 | NA | coding | upstream | 469953 | 59608382 ~ 59612038 (-) |
| LOC110524188 | LOC106613669 | coding | upstream | 527486 | 59665915 ~ 59709692 (-) |
| cope | LOC106613672 | coding | upstream | 572186 | 59710615 ~ 59714101 (-) |
| G421079 | NA | non-coding | downstream | 9117 | 59121749 ~ 59122035 (-) |
| G421077 | NA | non-coding | downstream | 9867 | 59121060 ~ 59121285 (-) |
| G420981 | NA | non-coding | downstream | 77415 | 59047705 ~ 59053737 (-) |
| G421034 | NA | non-coding | downstream | 85505 | 59045370 ~ 59045647 (-) |
| G420992 | NA | non-coding | downstream | 181159 | 58949757 ~ 58949993 (-) |
| G421137 | NA | non-coding | upstream | 27944 | 59166373 ~ 59166782 (-) |
| G421138 | NA | non-coding | upstream | 28484 | 59166913 ~ 59169292 (-) |
| G421141 | NA | non-coding | upstream | 33697 | 59172126 ~ 59172338 (-) |
| G421144 | NA | non-coding | upstream | 35185 | 59173614 ~ 59173934 (-) |
| G421935 | NA | non-coding | upstream | 212417 | 59350846 ~ 59352325 (-) |
| G420982 | LOC106613655 | other | downstream | 94853 | 59026103 ~ 59036299 (-) |
| G420421 | NA | other | downstream | 717009 | 58413128 ~ 58414143 (-) |
| G420193 | NA | other | downstream | 1017092 | 58112387 ~ 58114060 (-) |
| G419714 | NA | other | downstream | 1425216 | 57699745 ~ 57705936 (-) |
| LOC110524128 | LOC107602773 | other | downstream | 1504978 | 57612040 ~ 57627128 (-) |
| G422347 | NA | other | upstream | 962336 | 60100765 ~ 60101056 (-) |
| LOC110524239 | LOC106573579 | other | upstream | 1920565 | 61058949 ~ 61081864 (-) |
| G424474 | NA | other | upstream | 2478441 | 61616870 ~ 61617244 (-) |
| G424499 | LOC106613729 | other | upstream | 2511538 | 61649967 ~ 61651775 (-) |
| G424502 | NA | other | upstream | 2520604 | 61659033 ~ 61659585 (-) |
