lsg1 (lsg1)


Basic Information

Item Value
gene id lsg1
gene name lsg1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59131152 ~ 59138429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603571.2
AATCCTAATGAAAGCTATACAAATACACAGCGAGTTTGATTCAATAACCTCCAGGTTCAATaatctccagaaataagtctaaTTATACATTAGAGAAAACGCGATTAATCTCGATAGTTATTCGTCATTCTGCAGTGAAGTTGGGACGTTCCGTTTCACTTCCTCATGGGATAACAATTCTCACATGGGCTACATTTTTACAAAAACAGATTTGTGGTAACGTTAACAAGCAAGGCTAAACAAAAATCGAAAAAATGGGTAAGAAAAAGTCTGCCATGGGGCTCGGGAGATCACTGATAAAGGAGAGACTCAACGCAGGCCGAGGCAACAAGAGGGGCGATACTTGGCTCCACACCAGTGAACTGAACGATGGCTACGACTGGGGTCGTCTCAACCTGCAGTCAGTGACTGAACAGAGCTCTATGGATGACTTCCTTGCAACTGCTGAAATGGCCGGGACAGAGTTTGTTGCAGAAAAGCTCAACATCAAGTTTGTGGCAGCTGAAGCTCGGGCAGGATTACTGACAGCCGAGGAGACGGCAAAGCTGAAGAAGCTGCACGAGGAGAACAAACAACTCCTCAGAATTCCACGAAGGCCTCACTGGGATGAAGGCACCAGTCCAGAGGTCCtccagcagacagagagagacagcttcCTGGAGTGGAGAAGAGAACTGGCAGaGCTTGAAGAGGAGCAGAAAATGATTCTCACACCTTTTGAGAGGAATTTGGATTTCTGGAGACAGCTCTGGAGAGTGATTGAGAGGAGTGACATTGTTGTTCAGATTGTTGATGCCAGAAACCCATTGCTATTTCGTTGCCCTGACCTGGAGTGCTATGTAAAAGAGGTGTCCCGGTACAAGGTGAACTTGTTGCTGGTGAACAAGGCTGACCTGCTGACCCGGCAGCAGCGGAGGATCTGGGCCAGATACTTCCAGAGAGAGGGCCTCCGCGCTGTGTTCTGGTCCGCACTGGTGGAGAACGAGAGGCTGGAGGCAGAGGAGAAGGGAATGGAagtggaggagcaggaggatGAAAAGAGCGAAGCGGAGGATGAAGGTGAGGGAATGCCAGACAACGACAATATGAGCCGAAGACAGGAGGTAGAGGATAACAAGGAGAAGAATGAGGAAGAGAGCGAGGAGGAAGATGATGAGGAGAGCGATATGGAAGGGGAGCAGTTTAAAGACTGCGTAGCAGAGGGAGACTGGCAGACGGCATCGGAGGGTGAAGAGGCATCAGAGGATGAGGAGGCAGATGACGAAGAGAGTATAGATGGCTCCACCCACGGCTCCTCCTTCCACAACTCCAGTCGCCTGCTGACAAAAGATGAGCTGCTTGCCATATTTAAGGCGGCTCACGATGGGCCAACATTGAAAGAGGGCGAGCTCACAGTGGGGCTGGTGGGGTATCCCAATGTGGGCAAAAGTTCGACCATCAACACCATTCTGAGAAATAAGAAGGTGTCCGTCTCAGTCACGCCTGGGCACACCAAGCACTTTCAGacGCTGTATGTGGAGccaggtctgtgtctgtgtgactgccCTGGCCTGGTCATGCCCTCCTTTGTGTCCACTAAAGCTGAGATGATGTGCTGTGGGATCCTACCCATCGACCAGATACGAGACCATGTGCCTGCCATCTCTCTCGTGTGTCAGACAATTCCTCGGGATGTGCTGGAGGGCACCTATGGCATCAACATCATCCGCCCGCGAGAGGACGAGGACCCCGACCGCATCCCCAACTATGAGGAGCTACTGATGGCCTATGGATACATGAGGGGCTTCATGACAACACACGGACAACCTGACCAGTCGAGATCAGCCCGTTACATACTCAAGGATTACGTCATTGGAAAACTGCTGTACTGCCACCCTCCTCCCCACATCAGTGCTGCAGACTTCCAGCCCCAGCACAGCAAGTTCCAGGCCGGAGATGCAGACGGTGAAGACTCCAAGATAGGCAACAAACCGAGCAAAGTCAAGAGGCATGAGAATCTTGTGGACAAGAACTTCTTCCATCAGGAGAATGTTCGGGCGCTCACAAAGGGGGTCCAGTCTTTCATGGGTTACAAGGAAGGCAGCATAGGCCAGCGTGAACTGGTAAATCAAGGGAAACCTGGCTTAGAACAGCCTGTGGGCAAACCCTGGAAGAAGCATGGCAACAGGAACAAGAAAGAGAAAGTACGCCGACTCACCAAGCACCTGGATGCCTGAAGAACATCTATAAACTGTTAGAAATCGCTGGTAGTTTGGATTGTTAACCCCCAAAGGACTTTCCAATGCAATTACACAGATATTGGTATGTAGATACTGGTCAACAACAATAACCTCCATTGCACTTTTGCAATATGGAGAAACGGGGAAAGGTTGCCTTTTGATATCAAACATAATTCAGGATATTCTGTGTAACTCATCATGCATTGCAGTGACAGTACATTCCACTATTACCAGAGCAGAGTTGGGGTCAACTCAATTCCAGGAATTTCTGCAACTGCGATTGAGCCTTACTCTGAACCAGAAGAAATTCATTGGAAATCAATCAGTGAAGATTGTCATTTTTCAATAATGTTTGTTACAAGGTGCAGCCTATTGTACTTTACAGCAGGGATATTCAGCAGGGGGTCCGCAAaagtatattaaaaaaaataaaataatgcttTTTTAA
>TU477230
AACAATTCTCACATGGGCTACATTTTTACAAAAACAGATTTGTGGTAACGTTAACAAGCAAGGCTAAACAAAAATCGAAAAAATGGGTAAGAAAAAGTCTGCCATGGGGCTCGGGAGATCACTGATAAAGGAGAGACTCAACGCAGGCCGAGGCAACAAGAGGGGCGATACTTGGCTCCACACCAGTGAACTGAACGATGGCTACGACTGGGGTCGTCTCAACCTGCAGTCAGTGACTGAACAGAGCTCTATGGATGACTTCCTTGCAACTGCTGAAATGGCCGGGACAGAGTTTGTTGCAGAAAAGCTCAACATCAAGTTTGTGGCAGCTGAAGCTCGGGCAGGATTACTGACAGCCGAGGAGACGGCAAAGCTGAAGAAGCTGCACGAGGAGAACAAACAACTCCTCAGAATTCCACGAAGGCCTCACTGGGATGAAGGCACCAGTCCAGAGGTCCtccagcagacagagagagacagcttcCTGGAGTGGAGAAGAGAACTGGCAGaGCTTGAAGAGGAGCAGAAAATGATTCTCACACCTTTTGAGAGGAATTTGGATTTCTGGAGACAGCTCTGGAGAGTGATTGAGAGGAGGTAGGAATCAGAGCTGCTCGGTCTTGTGACACTGATTGTCAGCTGTTCGATGCCTTGTATGATGGTGGAAATGTTGTGAATTTCCCTCCGCAGTGACATTGTTGTTCAGATTGTTGATGCCAGAAACCCATTGCTATTTCGTTGCCCTGACCTGGTAAGTAAAGGGCCTAAGGCTGTCACATCAAACAATTGAGGCCAATTTTTCTTGAATGTGGGATGAAATTGCCAGGTGGGGGAACCCACCCCACCAAACTGATAGTAGGGGAAACATTGCGGTATTTCACCCATTGATCTTCCTGGTTCCTGTAGGAGTGCTATGTAAAAGAGGTGTCCCGGTACAAGGTGAACTTGTTGCTGGTGAACAAGGCTGACCTGCTGACCCGGCAGCAGCGGAGGATCTGGGCCAGATACTTCCAGAGAGAGGGCCTCCGCGCTGTGTTCTGGTCCGCACTGGTGGAGAACGAGAGGCTGGAGGCAGAGGAGAAGGGAATGGAagtggaggagcaggaggatGAAAAGAGCGAAGCGGAGGATGAAGGTGAGGGAATGCCAGACAACGACAATATGAGCCGAAGACAGGAGGTAGAGGATAACAAGGAGAAGAATGAGGAAGAGAGCGAGGAGGAAGATGATGAGGAGAGCGATATGGAAGGGGAGCAGTTTAAAGACTGCGTAGCAGAGGGAGACTGGCAGACGGCATCGGAGGGTGAAGAGGCATCAGAGGATGAGGAGGCAGATGACGAAGAGAGTATAGATGGCTCCACCCACGGCTCCTCCTTCCACAACTCCAGTCGCCTGCTGACAAAAGATGAGCTGCTTGCCATATTTAAGGCGGCTCACGATGGGCCAACATTGAAAGAGGGCGAGCTCACAGTGGGGCTGGTGGGGTATCCCAATGTGGGCAAAAGTTCGACCATCAACACCATTCTGAGAAATAAGAAGGTGTCCGTCTCAGTCACGCCTGGGCACACCAAGCACTTTCAGacGCTGTATGTGGAGccaggtctgtgtctgtgtgactgccCTGGCCTGGTCATGCCCTCCTTTGTGTCCACTAAAGCTGAGATGATGTGCTGTGGGATCCTACCCATCGACCAGATACGAGACCATGTGCCTGCCATCTCTCTC

Function

symbol description
lsg1 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in ribosomal subunit export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in Cajal body and endoplasmic reticulum. Predicted to be active in cytosol. Is expressed in eye; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human LSG1 (large 60S subunit nuclear export GTPase 1).

NR:

description
large subunit GTPase 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603571.2 False 2667 mRNA 0.49 14 59131152 59138429
TU477230 True 1725 TUCP 0.51 8 59132870 59138257

Neighbor

gene id symbol gene type direction distance location
tmem44 tmem44 coding downstream 141 59125081 ~ 59131011 (-)
atp13a3 LOC106613657 coding downstream 16047 59055120 ~ 59115105 (-)
trnaa-ugc-13 NA coding downstream 104554 59026526 ~ 59026598 (-)
LOC118964628 NA coding downstream 129572 58982688 ~ 59001580 (-)
gamt gamt coding downstream 274705 58852019 ~ 58856447 (-)
LOC110524182 LOC106613664 coding upstream 221457 59359886 ~ 59448197 (-)
LOC110524184 LOC106613666 coding upstream 330351 59468780 ~ 59563676 (-)
LOC118964629 NA coding upstream 469953 59608382 ~ 59612038 (-)
LOC110524188 LOC106613669 coding upstream 527486 59665915 ~ 59709692 (-)
cope LOC106613672 coding upstream 572186 59710615 ~ 59714101 (-)
G421079 NA non-coding downstream 9117 59121749 ~ 59122035 (-)
G421077 NA non-coding downstream 9867 59121060 ~ 59121285 (-)
G420981 NA non-coding downstream 77415 59047705 ~ 59053737 (-)
G421034 NA non-coding downstream 85505 59045370 ~ 59045647 (-)
G420992 NA non-coding downstream 181159 58949757 ~ 58949993 (-)
G421137 NA non-coding upstream 27944 59166373 ~ 59166782 (-)
G421138 NA non-coding upstream 28484 59166913 ~ 59169292 (-)
G421141 NA non-coding upstream 33697 59172126 ~ 59172338 (-)
G421144 NA non-coding upstream 35185 59173614 ~ 59173934 (-)
G421935 NA non-coding upstream 212417 59350846 ~ 59352325 (-)
G420982 LOC106613655 other downstream 94853 59026103 ~ 59036299 (-)
G420421 NA other downstream 717009 58413128 ~ 58414143 (-)
G420193 NA other downstream 1017092 58112387 ~ 58114060 (-)
G419714 NA other downstream 1425216 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 1504978 57612040 ~ 57627128 (-)
G422347 NA other upstream 962336 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1920565 61058949 ~ 61081864 (-)
G424474 NA other upstream 2478441 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 2511538 61649967 ~ 61651775 (-)
G424502 NA other upstream 2520604 61659033 ~ 61659585 (-)

Expression


Co-expression Network