fam43a (fam43a)


Basic Information

Item Value
gene id fam43a
gene name fam43a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59139437 ~ 59141452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603574.2
TAGACCATCCCACTCACAGCAGAACCAACCTCACAGCAATCATTAACCGCAGAATGGGATAGCGCAGTTGTCTGGTTATGGAGAAGTCTTCAGAGGATGAACACATGCATTACAGGATAACTTGACTGTTTGTTGTATTGGAGTTGCTATTATATGAAAAGGGTCAGTAAAAAGATACGATTTAGTTGCAGTAAAACGTTCGCTGTAGTTGTAGATTTTTTGCTGTTTACGTGACACGACCATATAATGCTGCCTTGGAAGAAGAACAAGTTCGACCTGATAGATGAAGATAAACAGTCGAAGCAGAAGGGTTATGCCGTGAGTTTGAACTACTCTGCGCTGACCTCCTTTGCCAAGTCTTGTCCGGAGAGTGCTTTGAACAGGGTTGGAAGCATGTTCAAGTCAAAAAGGAAAAAGGTGAAAATTACCAGCGAAGACCCCACATACACGGTCCTCTACCTGGGCAATGCCACCACCATCCAGTCGAAAGGAGAAGGCTGTACGGACGTGGCTGTGAGCAAGATTTGGGGCAAGAGCGAAATGGGCAAAAATGGCACGAAGATGAAACTGACCATCAGCTCGCAGGGAATCCGGATGGTGCATGTGGACGACAAGGCGAGGAGACCGGGACATTTGTATTTATTGCACCGGATAACCTATTGCGTTGCCGACCCAAGATTACACAAAATTTTCGCTTGGATATACAGACATGAGATGAAGCACAAGGCAGTGATGCTGCGATGCCATGCGGTGCTGGTGTCCAAGCCGGAGAAGGCAAAGGCCATGGCACTGCTTTTGTACCAGACCTCGGCAACAGCGCTTGCTGAATTTAAAAGACTCAAAAGGAGGGACGATGCAAGGCACCAGCAACAGCAGCTGATAGGGGAACAAACCATACCCCTTGTGCCTCTCAGGAAGCTTCTAAACGGACAGTGTTATTACAAACCCCCGGTGGAGCGCAGCAGGAGCGCACCCAAATTGGGCTCTATCACAGAGGACTTGatcggagaggaggaggaggagaaagcgATGCTCTTTGAGTGTGAGGACATTCTAGACACGAATGACGATTGTGTGGGCAATGGTAAACAGGAGCTGTCCCAGATTATCAGTGACCTTGGAGAGATGTGCATTGGAAACGACGTACAAACGCTAAAAGCGGACTTTAGGGTTACCCGACTCCTCTCCGGGGAGAGCACGGGCAGCGAATCGTCAATAGAAAGCAACCAGGAGCCAATTTCGGTCTCTAACGGATTCGAGGGGGGAAGATGCAGGAAATAACATAAATAAGTCTGCATTGTCCTGGAGCCAAAATTGCCTCCACAAATAATTTGCTTTTCTGTTTATTTCACGCTGTCCATTAAATGAGTGTAGGCAATGCCTGTAGTATTGCGGCTCCTCGTGAAAGGATACATGTTACAATGATTGTGGACATAATCCGCACAAAAAACACCTATTATTGAATGATATTCTGGGAAAACATGGATAGTCTACAGAAAAGGGGAGGACTGCATGCTGAGACTGAACCCCAAACTCGCAGTGCGCACCAGGACAGTGATTTCCACTCTTCAATAAGAGGGTTTGTATTAGAGCTTGTTTACCCAACCTATTTCCCTCATGGAAATGACATTCTTCTTGAACAACATTGTCCACGAATATGTAACTTTACGTTTTAAAAGCACGTTTACTTTTTGGCTCGATGGGTTAGAGTAGATGTCCCTCACTCTCCTTTCAGAACGCTTTTCTACAATTAAAAACTGTTGTTAAATTCAGTCGAGTATTACGTTTATTAGGCTATGTGTATAATATCGTTTTCTCGTAGGCCTATATGGTCTCATAAACATAATGTCATATCTTTGCTGTGCAAAAGAAAATTACCCTAATGTATTAATATGTACATCGTAAATGCATTATGTGTATACAGATATCCATTCTTTTTTAAAGGAGAACATGTGGTTTGTTTATGTGAACCTTAAAAAAAGAccaatacaaaataaaaatgaaagaatATGCAGG

Function

symbol description
fam43a Is expressed in several structures, including blood vessel; nervous system; optic primordium; optic vesicle; and solid lens vesicle. Orthologous to human FAM43A (family with sequence similarity 43 member A).

NR:

description
protein FAM43A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603574.2 True 2016 mRNA 0.44 1 59139437 59141452

Neighbor

gene id symbol gene type direction distance location
LOC110524173 LOC106613656 coding upstream 89271 59038387 ~ 59050166 (+)
LOC110524172 LOC106613655 coding upstream 103134 59026005 ~ 59036303 (+)
LOC110524171 LOC106613654 coding upstream 126355 59007333 ~ 59013082 (+)
LOC110522980 LOC106613653 coding upstream 153848 58953813 ~ 58985589 (+)
ndufa7 ndufa7 coding upstream 198970 58936825 ~ 58940467 (+)
LOC110524179 NA coding downstream 25801 59167253 ~ 59169330 (+)
srsf11 LOC106613665 coding downstream 209327 59350779 ~ 59358665 (+)
LOC110524183 cgl coding downstream 314912 59456364 ~ 59463907 (+)
LOC110524186 LOC106613996 coding downstream 449608 59591060 ~ 59595336 (+)
LOC110524187 LOC106613668 coding downstream 502331 59643783 ~ 59661241 (+)
G421090 lsg1 non-coding upstream 6432 59131185 ~ 59133005 (+)
G421080 NA non-coding upstream 16905 59122304 ~ 59122532 (+)
G421069 NA non-coding upstream 22733 59116486 ~ 59116704 (+)
G420665 NA non-coding upstream 186560 58952502 ~ 58952877 (+)
G420663 NA non-coding upstream 188103 58951093 ~ 58951334 (+)
G421133 NA non-coding downstream 28581 59170033 ~ 59171379 (+)
G421188 NA non-coding downstream 92085 59233537 ~ 59237839 (+)
G421362 NA non-coding downstream 198599 59340051 ~ 59347531 (+)
G421376 NA non-coding downstream 217630 59359082 ~ 59359566 (+)
G421372 NA non-coding downstream 218464 59359916 ~ 59361000 (+)
G420634 NA other upstream 195220 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 722661 58411240 ~ 58418268 (+)
G419452 NA other upstream 1239789 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1772100 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 2181272 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 1552805 60694220 ~ 60695905 (+)
G423922 NA other downstream 2580085 61721537 ~ 61722024 (+)
G424079 NA other downstream 2964071 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3141700 62283054 ~ 62327772 (+)
G425224 NA other downstream 3903638 63045090 ~ 63051530 (+)

Expression


Co-expression Network