LOC110524179


Basic Information

Item Value
gene id LOC110524179
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59167253 ~ 59169330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473551.2
aggaaaaatgtgaagggggtgaatacttcgGCAAGCcagtgtgatatatatatatatatatatagtatactatagtatagccacTGTGATGTATACTATAGTTAACGAAGTAATACTAAGTGTCTGTTGTGTAGTGAGCTGtttgtagcccatgtgcctcaccctaattaTTTGGTCCCTTTCACCCTGAGTGGCGCTGTGGTCTactgcactgcatctcagtacaagaggcgtcactgtagtacctggttcgaatccaggctgcatcacatctggccatgattgaGAGTCAcaaagggtggcgcacaatttgtCCAGCCTTatccgggtcaggtGTGCTGGAGGCAGAGCAGATCTCCACCAGCTGCAAcatgttccataatcaagacctctacaaatactcaggcctgccacttccacgctgccagatcgtaacctctgctcaTTTTGtctgctctgactctggtccctgtctccagttccacatctCGTCAGTCCTGCTACTCAGTCCTGGATCCCCCACTCTACCGCTTACTTGAATTTctctccggacctgcttacccagccccaactcccctagctccagcctcagcctcagaaCCTGGCTCTGCTCTGCATAACAGCTGAAAAGAAAGCTTTGCTGTTGGGACAGCATTATGtaggcaccgtttgtcaccattatagtgaaattcatgtattgtttagtgttgtctaGTGGCTTTACTGGCATGCCCCACCAatatgtacatgctaaaatcaccactgtatAGGCCTATAGGATATAGCCTAGCTTTTAGGAGGACAATTTGCAGGCAGAGACAAATCTGTAATCAATACTTTTTGAAAATGAAGTGTGCAATGCTcgctcaccatagtagcctaacctatgtgCACGTTGTGCCTTTTCATTGATGATTTACATGTTTTGATTGCACTTCAACTCATGTTGGTTGAGACCCCTCCACTTCTTTCCATGATCAATATTTTCATCCCAAAGATGTCTGTCTGGGGTCCCAGCAGGTTAAAACAGCCATggaagaccagtctacggagCTCATGTGAATTCTGCAGTATATTAACAATCAGTGAATTATACAAAGTTCCTTCTTGAATTGTTGGGTAGACCTACAGTAGTTACAAGACAGAAGTTTAAGCTTAAAGCTACAGTCTCAGACCTGGGAataactgtaacggttttcttcctgggaaggagaggaggaccaaaatgcagcgtggttatttataaacatctttaatgaaagatgaaaacgtgaacactatacaaaataagaaaacgtggcaaaaaccgaaacagtcctaactgg

Function

NR:

description
uncharacterized protein LOC110487741, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473551.2 True 1325 mRNA 0.44 3 59167253 59169330

Neighbor

gene id symbol gene type direction distance location
fam43a fam43a coding upstream 25801 59139437 ~ 59141452 (+)
LOC110524173 LOC106613656 coding upstream 117087 59038387 ~ 59050166 (+)
LOC110524172 LOC106613655 coding upstream 130950 59026005 ~ 59036303 (+)
LOC110524171 LOC106613654 coding upstream 154171 59007333 ~ 59013082 (+)
LOC110522980 LOC106613653 coding upstream 181664 58953813 ~ 58985589 (+)
srsf11 LOC106613665 coding downstream 181449 59350779 ~ 59358665 (+)
LOC110524183 cgl coding downstream 287034 59456364 ~ 59463907 (+)
LOC110524186 LOC106613996 coding downstream 421730 59591060 ~ 59595336 (+)
LOC110524187 LOC106613668 coding downstream 474453 59643783 ~ 59661241 (+)
LOC110524190 LOC106613673 coding downstream 545376 59714706 ~ 59734498 (+)
G421090 lsg1 non-coding upstream 34248 59131185 ~ 59133005 (+)
G421080 NA non-coding upstream 44721 59122304 ~ 59122532 (+)
G421069 NA non-coding upstream 50549 59116486 ~ 59116704 (+)
G420665 NA non-coding upstream 214376 58952502 ~ 58952877 (+)
G420663 NA non-coding upstream 215919 58951093 ~ 58951334 (+)
G421133 NA non-coding downstream 703 59170033 ~ 59171379 (+)
G421188 NA non-coding downstream 64207 59233537 ~ 59237839 (+)
G421362 NA non-coding downstream 170721 59340051 ~ 59347531 (+)
G421376 NA non-coding downstream 189752 59359082 ~ 59359566 (+)
G421372 NA non-coding downstream 190586 59359916 ~ 59361000 (+)
G420634 NA other upstream 223036 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 750477 58411240 ~ 58418268 (+)
G419452 NA other upstream 1267605 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1799916 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 2209088 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 1524927 60694220 ~ 60695905 (+)
G423922 NA other downstream 2552207 61721537 ~ 61722024 (+)
G424079 NA other downstream 2936193 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3113822 62283054 ~ 62327772 (+)
G425224 NA other downstream 3875760 63045090 ~ 63051530 (+)

Expression


Co-expression Network