srsf11 (LOC106613665)


Basic Information

Item Value
gene id srsf11
gene name LOC106613665
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59350779 ~ 59358665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603576.2
CAATTGTTCCCGTTTGAAACGaaaggctgtggtctatcttggtttagatATATGCATCTTTGGTAGCGTGCTAATGGCCGTGGGAATTCAATTGTGTAGCATTAGCTAGTGGAAATGATTGTTGTTTGCTTGCTTGACTGCACAATTATATGTTACGTTCTTTAGATGCTAAATTAGTTGGGTTGTTACATCTAGCTAGACGTCTGTGCGTTTCAAATTAACATCTAGTCGTGGAAAATGACGAACGTTATTCAGGTGACAAATGTCTCTCCGAGTACCACCTCCgaacagatgagaactctcttcgGGTTTCTTGGAAATATTGAAGAACTGAAGTTATTTCCACCAGATGAATCTTCCTTGCCTGTGACTTCACGTGTCTGTTTTGTAAAGTTCCTTGAACCTGAGTCGGTTGGAGTGTCCCAGCATCTGACCAACACTGTCTTTGTGGACAGAGCCCTGATTGTTGTCCCATTCGCAGAAGGAGTGATTCCTGATGAGTCTAAAGCTCTATCACTGCTGGCACCAGCGAACGCCGTGGCAGGATGCATGCCTGGAGGAGGCCTTCTCCCCACTCCGAATCCTTTGGCGTCCATGGGAGGCGTGCCTCTTTCAGCTCTCGGAAATCCGAACATGGATCACATGGCTGCCATGGGCATGTCTGGCAACATCAACCCCCAGGCCCTCTCTGCTGACTTTCTGAAGCTTATGCAGTCCATGGATCCTACTAAGATGAATCCAATGGCTGCTGGTATGATGATTAATCCTGGTATGAAGAATGACTCCAACAAGGAGATAGAGGAGGCCATGAAGAGGGTCAGAGAGGCCCAGTCACTCATATCTGCCGCTATCGAGCCAGGAAATAAGAAAGACGACAAGCGCAAACATTCCCGCTCCAGGTCCCGGTCGAGGCGGAGGAGGTCCAGGTCTCGTCACAGGCGATCAAAGAGCAGGTCTCGACGGAGGTCCCACTCGAGGAGTAGGAGGCGGTCGAAGAGCCCCCGCAGACGGAAGTCTCACTCCAGAGAGAGGGGTAGACGCAGCAAATCCAGGGATAGGAGGAAAGAAGATAAATCCAAAAAGCGCTCCAAGACGCCGCCTAAGAGCTACAGCAGCACCAGGAGGTCTCGAAGCATCAATCGGAGACGTAGAAGAAGCCGCAGCGCCTCTAGGTCACCAAAAAAGTCCAGGTCCCCAAAGAGGAAACTGTCCAGGTCCCCTTCCCCTAGAAGGCACAAGAAGGACAAAAAGAAAGACAAAGAGCGAGAGAAGGACCGTGACAGGGGGAGGAAAGACGTCAGAGATCGGAGCCAAGACGAAAGAGAACGCTCCACTAGTAAGAAGAGCAAAGACAAGGATAAGGACCGAGACCACAAATCTGACAGTGAGAAAGGAGATGTCAAGGTGACCAGGGATTACGATGAGGAGGAGCAAGGCTATGACAGTGGAAAAGAGGTAGAGGacgaagaggagaggaagagcgaCTCTGATTCTGCGTCTCCCCCGAAGCCCCAGGAGTCTGACGAGAAGCTTGCAGGGGAGAGCGGCAAGAAGTCCAAACAGAACGGAGATGACCACCATGATGAGGAAGACATGGAGATGAGCGACTGAGTACACCCAGGGAAACCCAGCCAGATGATGTCACTGAAAACCGACAGGCTCCATTCCCTACCGTTCTCTTTTTAAAGGCGTCTAGATAACGTGTCTGATCTTTTAAATGAATACTTGTGGGAATCTGGTGGGTTGTAGTCCTATTGGGGAGATGTACAGTTTTTAGAGGTATAGAGACACTTTCCATCTCTAGACTGGTTAGGGGAAATATTGTTCCTGTTTGAAATAGCCAGTTTATTTCTGCCTGTGTCTGGTGAGCATGTGTAGGAAATCAAAATATAAAATGTCAAATTGCTGTACTTTTATGTTGAAGGGCCTGTTGAATGTGAGGGATTTTGAAAGTGATTTCCTTTTTGGGCCTCAACGATTTTATTCATCTTGAACATATAGGAACTGTTTTCTCCTAAATGACTCACTGAACTTATGTATACTTAAACCTTTTACAGGACAGGGGTTGGCCCCTCAACTACTCAGACTGTTAAATTGTTTTTAGCCTGGTACCATTCTGGTTTCGGTGTAGCTTTCTATTCTTTGTTGTAATCTTGCCAAATTGACTCAATCTGTAAAGCACTTAATACTGTTGTAGACATACCCTTCCACCCGTGACGATATACTGTAGATCCAAATCAGTGTTTGGATTATTATGATGGAACACCCTGTACTGTCTACATGTTTTACAAAGGAAAGTCTATAATAAAACGTGGTCAAAGTAA
>XM_021603575.2
CCCGTTTGAAACGaaaggctgtggtctatcttggtttagatATATGCATCTTTGGTAGCGTGCTAATGGCCGTGGGAATTCAATTGTGTAGCATTAGCTAGTGGAAATGATTGTTGTTTGCTTGCTTGACTGCACAATTATATGTTACGTTCTTTAGATGCTAAATTAGTTGGGTTGTTACATCTAGCTAGACGTCTGTGCGTTTCAAATTAACATCTAGTCGTGGAAAATGACGAACGTTATTCAGGTGACAAATGTCTCTCCGAGTACCACCTCCgaacagatgagaactctcttcgGGTTTCTTGGAAATATTGAAGAACTGAAGTTATTTCCACCAGATGAATCTTCCTTGCCTGTGACTTCACGTGTCTGTTTTGTAAAGTTCCTTGAACCTGAGTCGGTTGGAGTGTCCCAGCATCTGACCAACACTGTCTTTGTGGACAGAGCCCTGATTGTTGTCCCATTCGCAGAAGGAGTGATTCCTGATGAGTCTAAAGCTCTATCACTGCTGGCACCAGCGAACGCCGTGGCAGGATGCATGCCTGGAGGAGGCCTTCTCCCCACTCCGAATCCTTTGGCGTCCATGGGAGGCGTGCCTCTTTCAGCTCTCGGAAATCCGAACATGGATCACATGGCTGCCATGGGCATGTCTGGCAACATCAACCCCCAGGCCCTCTCTGCTGACTTTCTGAAGCTTATGCAGTCCATGGATCCTACTAAGATGAATCCAATGGCTGCTGGTATGATGATTAATCCTGGTATGAAGAATGACTCCAACAAGGAGATAGAGGAGGCCATGAAGAGGGTCAGAGAGGCCCAGTCACTCATATCTGCCGCTATCGAGCCAGGAAATAAGAAAGACGACAAGCGCAAACATTCCCGCTCCAGGTCCCGGTCGAGGCGGAGGAGGTCCAGGTCTCGTCACAGGCGATCAAAGAGCAGGTCTCGACGGAGGTCCCACTCGAGGAGTAGGAGGCGGTCGAAGAGCCCCCGCAGACGGAAGTCTCACTCCAGAGAGAGGGGTAGACGCAGCAAATCCAGGGATAGGAGGAAAGAAGATAAATCCAAAAAGCGCTCCAAGACGCCGCCTAAGAGCTACAGCAGCACCAGGAGGTCTCGAAGCATCAATCGGAGACGTAGAAGAAGCCGCAGCGCCTCTAGGTCACCAAAAAAGTCCAGGTCCCCAAAGAGGAAACTGTCCAGGTCCCCTTCCCCTAGAAGGCACAAGAAGGACAAAAAGAAAGACAAAGAGCGAGAGAAGGACCGTGACAGGGGGAGGAAAGACGTCAGAGATCGGAGCCAAGACGAAAGAGAACGCTCCACTAGTAAGAAGAGCAAAGACAAGGATAAGGACCGAGACCACAAATCTGACAGTGAGAAAGGAGATGTCAAGAATGCTTTGCTCTTGAAGGTGACCAGGGATTACGATGAGGAGGAGCAAGGCTATGACAGTGGAAAAGAGGTAGAGGacgaagaggagaggaagagcgaCTCTGATTCTGCGTCTCCCCCGAAGCCCCAGGAGTCTGACGAGAAGCTTGCAGGGGAGAGCGGCAAGAAGTCCAAACAGAACGGAGATGACCACCATGATGAGGAAGACATGGAGATGAGCGACTGAGTACACCCAGGGAAACCCAGCCAGATGATGTCACTGAAAACCGACAGGCTCCATTCCCTACCGTTCTCTTTTTAAAGGCGTCTAGATAACGTGTCTGATCTTTTAAATGAATACTTGTGGGAATCTGGTGGGTTGTAGTCCTATTGGGGAGATGTACAGTTTTTAGAGGTATAGAGACACTTTCCATCTCTAGACTGGTTAGGGGAAATATTGTTCCTGTTTGAAATAGCCAGTTTATTTCTGCCTGTGTCTGGTGAGCATGTGTAGGAAATCAAAATATAAAATGTCAAATTGCTGTACTTTTATGTTGAAGGGCCTGTTGAATGTGAGGGATTTTGAAAGTGATTTCCTTTTTGGGCCTCAACGATTTTATTCATCTTGAACATATAGGAACTGTTTTCTCCTAAATGACTCACTGAACTTATGTATACTTAAACCTTTTACAGGACAGGGGTTGGCCCCTCAACTACTCAGACTGTTAAATTGTTTTTAGCCTGGTACCATTCTGGTTTCGGTGTAGCTTTCTATTCTTTGTTGTAATCTTGCCAAATTGACTCAATCTGTAAAGCACTTAATACTGTTGTAGACATACCCTTCCACCCGTGACGATATACTGTAGATCCAAATCAGTGTTTGGATTATTATGATGGAACACCCTGTACTGTCTACATGTTTTACAAAGGAAAGTCTATAATAAAACGTGGTCAAAGTAA
>XM_021603578.2
TTGAAACGaaaggctgtggtctatcttggtttagatATATGCATCTTTGGTAGCGTGCTAATGGCCGTGGGAATTCAATTGTGTAGCATTAGCTAGTGGAAATGATTGTTGTTTGCTTGCTTGACTGCACAATTATATGTTACGTTCTTTAGATGCTAAATTAGTTGGGTTGTTACATCTAGCTAGACGTCTGTGCGTTTCAAATTAACATCTAGTCGTGGAAAATGACGAACGTTATTCAGGTGACAAATGTCTCTCCGAGTACCACCTCCgaacagatgagaactctcttcgGGTTTCTTGGAAATATTGAAGAACTGAAGTTATTTCCACCAGATTAAGGTAGGAATTACAAGACGTCTTGATCATCCCTCTGAAGCTCTCATGGCAAAGACAAGAAAAGACTACAAGAGATGCAACGTTCTTTCATTGCTCTCTCTTCCCAATTTGAATCTTCCTTGCCTGTGACTTCACGTGTCTGTTTTGTAAAGTTCCTTGAACCTGAGTCGGTTGGAGTGTCCCAGCATCTGACCAACACTGTCTTTGTGGACAGAGCCCTGATTGTTGTCCCATTCGCAGAAGGAGTGATTCCTGATGAGTCTAAAGCTCTATCACTGCTGGCACCAGCGAACGCCGTGGCAGGATGCATGCCTGGAGGAGGCCTTCTCCCCACTCCGAATCCTTTGGCGTCCATGGGAGGCGTGCCTCTTTCAGCTCTCGGAAATCCGAACATGGATCACATGGCTGCCATGGGCATGTCTGGCAACATCAACCCCCAGGCCCTCTCTGCTGACTTTCTGAAGCTTATGCAGTCCATGGATCCTACTAAGATGAATCCAATGGCTGCTGGTATGATGATTAATCCTGGTATGAAGAATGACTCCAACAAGGAGATAGAGGAGGCCATGAAGAGGGTCAGAGAGGCCCAGTCACTCATATCTGCCGCTATCGAGCCAGGAAATAAGAAAGACGACAAGCGCAAACATTCCCGCTCCAGGTCCCGGTCGAGGCGGAGGAGGTCCAGGTCTCGTCACAGGCGATCAAAGAGCAGGTCTCGACGGAGGTCCCACTCGAGGAGTAGGAGGCGGTCGAAGAGCCCCCGCAGACGGAAGTCTCACTCCAGAGAGAGGGGTAGACGCAGCAAATCCAGGGATAGGAGGAAAGAAGATAAATCCAAAAAGCGCTCCAAGACGCCGCCTAAGAGCTACAGCAGCACCAGGAGGTCTCGAAGCATCAATCGGAGACGTAGAAGAAGCCGCAGCGCCTCTAGGTCACCAAAAAAGTCCAGGTCCCCAAAGAGGAAACTGTCCAGGTCCCCTTCCCCTAGAAGGCACAAGAAGGACAAAAAGAAAGACAAAGAGCGAGAGAAGGACCGTGACAGGGGGAGGAAAGACGTCAGAGATCGGAGCCAAGACGAAAGAGAACGCTCCACTAGTAAGAAGAGCAAAGACAAGGATAAGGACCGAGACCACAAATCTGACAGTGAGAAAGGAGATGTCAAGAATGCTTTGCTCTTGAAGGTGACCAGGGATTACGATGAGGAGGAGCAAGGCTATGACAGTGGAAAAGAGGTAGAGGacgaagaggagaggaagagcgaCTCTGATTCTGCGTCTCCCCCGAAGCCCCAGGAGTCTGACGAGAAGCTTGCAGGGGAGAGCGGCAAGAAGTCCAAACAGAACGGAGATGACCACCATGATGAGGAAGACATGGAGATGAGCGACTGAGTACACCCAGGGAAACCCAGCCAGATGATGTCACTGAAAACCGACAGGCTCCATTCCCTACCGTTCTCTTTTTAAAGGCGTCTAGATAACGTGTCTGATCTTTTAAATGAATACTTGTGGGAATCTGGTGGGTTGTAGTCCTATTGGGGAGATGTACAGTTTTTAGAGGTATAGAGACACTTTCCATCTCTAGACTGGTTAGGGGAAATATTGTTCCTGTTTGAAATAGCCAGTTTATTTCTGCCTGTGTCTGGTGAGCATGTGTAGGAAATCAAAATATAAAATGTCAAATTGCTGTACTTTTATGTTGAAGGGCCTGTTGAATGTGAGGGATTTTGAAAGTGATTTCCTTTTTGGGCCTCAACGATTTTATTCATCTTGAACATATAGGAACTGTTTTCTCCTAAATGACTCACTGAACTTATGTATACTTAAACCTTTTACAGGACAGGGGTTGGCCCCTCAACTACTCAGACTGTTAAATTGTTTTTAGCCTGGTACCATTCTGGTTTCGGTGTAGCTTTCTATTCTTTGTTGTAATCTTGCCAAATTGACTCAATCTGTAAAGCACTTAATACTGTTGTAGACATACCCTTCCACCCGTGACGATATACTGTAGATCCAAATCAGTGTTTGGATTATTATGATGGAACACCCTGTACTGTCTACATGTTTTACAAAGGAAAGTCTATAATAAAACGTGGTCAAAGTAA
>XM_021603580.2
TTGAAACGaaaggctgtggtctatcttggtttagatATATGCATCTTTGGTAGCGTGCTAATGGCCGTGGGAATTCAATTGTGTAGCATTAGCTAGTGGAAATGATTGTTGTTTGCTTGCTTGACTGCACAATTATATGTTACGTTCTTTAGATGCTAAATTAGTTGGGTTGTTACATCTAGCTAGACGTCTGTGCGTTTCAAATTAACATCTAGTCGTGGAAAATGACGAACGTTATTCAGGTGACAAATGTCTCTCCGAGTACCACCTCCgaacagatgagaactctcttcgGGTTTCTTGGAAATATTGAAGAACTGAAGTTATTTCCACCAGATTAAGTGAATCTTCCTTGCCTGTGACTTCACGTGTCTGTTTTGTAAAGTTCCTTGAACCTGAGTCGGTTGGAGTGTCCCAGCATCTGACCAACACTGTCTTTGTGGACAGAGCCCTGATTGTTGTCCCATTCGCAGAAGGAGTGATTCCTGATGAGTCTAAAGCTCTATCACTGCTGGCACCAGCGAACGCCGTGGCAGGATGCATGCCTGGAGGAGGCCTTCTCCCCACTCCGAATCCTTTGGCGTCCATGGGAGGCGTGCCTCTTTCAGCTCTCGGAAATCCGAACATGGATCACATGGCTGCCATGGGCATGTCTGGCAACATCAACCCCCAGGCCCTCTCTGCTGACTTTCTGAAGCTTATGCAGTCCATGGATCCTACTAAGATGAATCCAATGGCTGCTGGTATGATGATTAATCCTGGTATGAAGAATGACTCCAACAAGGAGATAGAGGAGGCCATGAAGAGGGTCAGAGAGGCCCAGTCACTCATATCTGCCGCTATCGAGCCAGGAAATAAGAAAGACGACAAGCGCAAACATTCCCGCTCCAGGTCCCGGTCGAGGCGGAGGAGGTCCAGGTCTCGTCACAGGCGATCAAAGAGCAGGTCTCGACGGAGGTCCCACTCGAGGAGTAGGAGGCGGTCGAAGAGCCCCCGCAGACGGAAGTCTCACTCCAGAGAGAGGGGTAGACGCAGCAAATCCAGGGATAGGAGGAAAGAAGATAAATCCAAAAAGCGCTCCAAGACGCCGCCTAAGAGCTACAGCAGCACCAGGAGGTCTCGAAGCATCAATCGGAGACGTAGAAGAAGCCGCAGCGCCTCTAGGTCACCAAAAAAGTCCAGGTCCCCAAAGAGGAAACTGTCCAGGTCCCCTTCCCCTAGAAGGCACAAGAAGGACAAAAAGAAAGACAAAGAGCGAGAGAAGGACCGTGACAGGGGGAGGAAAGACGTCAGAGATCGGAGCCAAGACGAAAGAGAACGCTCCACTAGTAAGAAGAGCAAAGACAAGGATAAGGACCGAGACCACAAATCTGACAGTGAGAAAGGAGATGTCAAGAATGCTTTGCTCTTGAAGGTGACCAGGGATTACGATGAGGAGGAGCAAGGCTATGACAGTGGAAAAGAGGTAGAGGacgaagaggagaggaagagcgaCTCTGATTCTGCGTCTCCCCCGAAGCCCCAGGAGTCTGACGAGAAGCTTGCAGGGGAGAGCGGCAAGAAGTCCAAACAGAACGGAGATGACCACCATGATGAGGAAGACATGGAGATGAGCGACTGAGTACACCCAGGGAAACCCAGCCAGATGATGTCACTGAAAACCGACAGGCTCCATTCCCTACCGTTCTCTTTTTAAAGGCGTCTAGATAACGTGTCTGATCTTTTAAATGAATACTTGTGGGAATCTGGTGGGTTGTAGTCCTATTGGGGAGATGTACAGTTTTTAGAGGTATAGAGACACTTTCCATCTCTAGACTGGTTAGGGGAAATATTGTTCCTGTTTGAAATAGCCAGTTTATTTCTGCCTGTGTCTGGTGAGCATGTGTAGGAAATCAAAATATAAAATGTCAAATTGCTGTACTTTTATGTTGAAGGGCCTGTTGAATGTGAGGGATTTTGAAAGTGATTTCCTTTTTGGGCCTCAACGATTTTATTCATCTTGAACATATAGGAACTGTTTTCTCCTAAATGACTCACTGAACTTATGTATACTTAAACCTTTTACAGGACAGGGGTTGGCCCCTCAACTACTCAGACTGTTAAATTGTTTTTAGCCTGGTACCATTCTGGTTTCGGTGTAGCTTTCTATTCTTTGTTGTAATCTTGCCAAATTGACTCAATCTGTAAAGCACTTAATACTGTTGTAGACATACCCTTCCACCCGTGACGATATACTGTAGATCCAAATCAGTGTTTGGATTATTATGATGGAACACCCTGTACTGTCTACATGTTTTACAAAGGAAAGTCTATAATAAAACGTGGTCAAAGTAA

Function

NR:

description
serine/arginine-rich splicing factor 11-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603576.2 False 2324 mRNA 0.47 12 59350779 59358665
XM_021603575.2 False 2334 mRNA 0.47 12 59350787 59358665
XM_021603578.2 False 2440 mRNA 0.47 13 59350792 59358665
XM_021603580.2 True 2334 mRNA 0.47 13 59350792 59358665

Neighbor

gene id symbol gene type direction distance location
LOC110524179 NA coding upstream 181449 59167253 ~ 59169330 (+)
fam43a fam43a coding upstream 209327 59139437 ~ 59141452 (+)
LOC110524173 LOC106613656 coding upstream 300613 59038387 ~ 59050166 (+)
LOC110524172 LOC106613655 coding upstream 314476 59026005 ~ 59036303 (+)
LOC110524171 LOC106613654 coding upstream 337697 59007333 ~ 59013082 (+)
LOC110524183 cgl coding downstream 97699 59456364 ~ 59463907 (+)
LOC110524186 LOC106613996 coding downstream 232395 59591060 ~ 59595336 (+)
LOC110524187 LOC106613668 coding downstream 285118 59643783 ~ 59661241 (+)
LOC110524190 LOC106613673 coding downstream 356041 59714706 ~ 59734498 (+)
LOC110524191 LOC106613674 coding downstream 382551 59741216 ~ 59744639 (+)
G421362 NA non-coding upstream 3248 59340051 ~ 59347531 (+)
G421188 NA non-coding upstream 112940 59233537 ~ 59237839 (+)
G421133 NA non-coding upstream 179400 59170033 ~ 59171379 (+)
G421090 lsg1 non-coding upstream 217774 59131185 ~ 59133005 (+)
G421080 NA non-coding upstream 228247 59122304 ~ 59122532 (+)
G421376 NA non-coding downstream 417 59359082 ~ 59359566 (+)
G421372 NA non-coding downstream 1251 59359916 ~ 59361000 (+)
G421517 NA non-coding downstream 306059 59664724 ~ 59665892 (+)
G421614 LOC106613672 non-coding downstream 351952 59710617 ~ 59712799 (+)
G421616 NA non-coding downstream 359360 59718025 ~ 59718250 (+)
G420634 NA other upstream 406562 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 934003 58411240 ~ 58418268 (+)
G419452 NA other upstream 1451131 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1983442 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 2392614 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 1335592 60694220 ~ 60695905 (+)
G423922 NA other downstream 2362872 61721537 ~ 61722024 (+)
G424079 NA other downstream 2746858 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 2924487 62283054 ~ 62327772 (+)
G425224 NA other downstream 3686425 63045090 ~ 63051530 (+)

Expression


Co-expression Network