Item | Value |
---|---|
gene id | LOC110524187 |
gene name | LOC106613668 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048569.1 |
NCBI id | CM023223.2 |
chromosome length | 100798064 |
location | 59643783 ~ 59661241 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
nicalin-1-like isoform X5 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021603598.2 | False | 2891 | mRNA | 0.49 | 15 | 59643783 | 59661241 |
XM_021603596.2 | False | 2893 | mRNA | 0.49 | 15 | 59643784 | 59661241 |
XM_021603597.2 | False | 2890 | mRNA | 0.49 | 15 | 59643784 | 59661241 |
XM_021603599.2 | False | 2851 | mRNA | 0.49 | 15 | 59643784 | 59661241 |
XM_021603600.2 | True | 2847 | mRNA | 0.49 | 15 | 59643785 | 59661241 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110524186 | LOC106613996 | coding | upstream | 48447 | 59591060 ~ 59595336 (+) |
LOC110524183 | cgl | coding | upstream | 179876 | 59456364 ~ 59463907 (+) |
srsf11 | LOC106613665 | coding | upstream | 285118 | 59350779 ~ 59358665 (+) |
LOC110524179 | NA | coding | upstream | 474453 | 59167253 ~ 59169330 (+) |
fam43a | fam43a | coding | upstream | 502331 | 59139437 ~ 59141452 (+) |
LOC110524190 | LOC106613673 | coding | downstream | 53465 | 59714706 ~ 59734498 (+) |
LOC110524191 | LOC106613674 | coding | downstream | 79975 | 59741216 ~ 59744639 (+) |
LOC110524195 | LOC106613677 | coding | downstream | 140787 | 59802028 ~ 59821970 (+) |
LOC110524196 | LOC106613678 | coding | downstream | 165834 | 59827075 ~ 59838227 (+) |
LOC110524197 | LOC106613680 | coding | downstream | 208449 | 59869690 ~ 59880569 (+) |
G421372 | NA | non-coding | upstream | 282783 | 59359916 ~ 59361000 (+) |
G421376 | NA | non-coding | upstream | 284217 | 59359082 ~ 59359566 (+) |
G421362 | NA | non-coding | upstream | 296252 | 59340051 ~ 59347531 (+) |
G421188 | NA | non-coding | upstream | 405944 | 59233537 ~ 59237839 (+) |
G421133 | NA | non-coding | upstream | 472404 | 59170033 ~ 59171379 (+) |
G421517 | NA | non-coding | downstream | 3483 | 59664724 ~ 59665892 (+) |
G421614 | LOC106613672 | non-coding | downstream | 49376 | 59710617 ~ 59712799 (+) |
G421616 | NA | non-coding | downstream | 56784 | 59718025 ~ 59718250 (+) |
G421627 | NA | non-coding | downstream | 78578 | 59739819 ~ 59740031 (+) |
G420634 | NA | other | upstream | 699566 | 58942728 ~ 58944217 (+) |
G420117 | LOC100846954 | other | upstream | 1227007 | 58411240 ~ 58418268 (+) |
G419452 | NA | other | upstream | 1744135 | 57884380 ~ 57899648 (+) |
LOC110524119 | LOC106613607 | other | upstream | 2276446 | 57352343 ~ 57367627 (+) |
LOC100135807 | LOC106613594 | other | upstream | 2685618 | 56943838 ~ 56958165 (+) |
LOC110524226 | LOC106573564 | other | downstream | 1033016 | 60694220 ~ 60695905 (+) |
G423922 | NA | other | downstream | 2060296 | 61721537 ~ 61722024 (+) |
G424079 | NA | other | downstream | 2444282 | 62105523 ~ 62105872 (+) |
LOC110524265 | LOC106613745 | other | downstream | 2621911 | 62283054 ~ 62327772 (+) |
G425224 | NA | other | downstream | 3383849 | 63045090 ~ 63051530 (+) |