LOC110524188 (LOC106613669)


Basic Information

Item Value
gene id LOC110524188
gene name LOC106613669
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59665915 ~ 59709692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603602.2
TGGGCCATAATTACGTCAGCGCCTCTGCTTTTTTCTTCATTCAATTAGTTAGAATGGTTTTAGGTGCGGGTGCTGAACATTATAGTCTTGCCGGTAAAAACGTTTACTAGCAGTACTTTTAATATTGTAACCAGAGAGGTTTCAAGTGCCGTGTGGAATCATGTTCTACATTGATTCCCATTAAAACAGCACGCATTTTTCTGTCACTTATCAAGACGCAGCATCACAGACACAGCATCACAGACACCGCAGGACACGACTAGCAGCGGAACGACAGAGGAAGGCGAACATTCCGTTTGCACAACGGTGTTGTCTCCAGCCCAAAGATACTGCCAAGATGCCAGAGAGCGCGTGGAAGCTGGTCTTCTACACCATGTCCTGGTCCTACAGCACCTACCTGCTCTTCTTCACCAACTACACCTTCTTCCACGACCCGCCCTCCGCATTCTATGACTGGAAGAGTGGCATGACGGTGCCCACGGACATCGCCATCGCCTACCTGATCCAGGGCAGTTTCTACGGACACTCCATCTATGCCACGGTCTACATGGATGACTGGAGGAAGGATTCAACCGTCATGGTGGTGCACCACGTTGTCACTCTGGCCCTCATCACCTTCTCCTACGCTTTCAGATTCCACAACATTGGGTTACTGGTGCTGTTCCTCCACGACATCAATGACATCCAGCTGGAGTTCACCAAGCTCAACGTCTACTTCAAGACCCGGGGAGGGGACTACTACCTCATCCACGACATCTTGTCCAACATGGGCTCTGTCAGCTTCAGCATCacctgGTTTTGGTTCCGTCTCTACTGGTTCCCTCTGAAGGTTCTGTACGCCACCTGTGTGTCCAGCCTCCAGTCCGTCCCAAACATACCCTTCTATTTCTTTTTCAACAGCCTCCTCTTGACACTCCTCTGCATGAATATCTACTGGTTTTTGTTCATAGTGGCGTTTGTAGCGAAGGTCCTGACGGGGCAGATGAAGGATGTGAAAGACCTGAGGGAGTACGAGGGTGAGGAGGGAGCTCAGAGGGCTGCAGCCCTGCTCGCGGCCCAGCAGCGGCTGCAGAGTGAAGATGCAGGACATCTCAACAACTCTGCTGAAGGGAAACACGTGCAGAACGGGATCACCAAGGAGAAGCATCTGTAGAGGCCTCTCTAGTTCCACCATCTGGCACGACCTAGATTGTTTCAGACTTAGCTCTAAGTGACTCTCGGGGTCTCGCGAAAAGGATGAAAAAACAAttgatcatttttttttttttttttttttttttttcatcgtGTTCTatagattttttatttgattatatCGCTGTGAATGTTATTTAAGGTGACTTTGTCTTATATTAACATTAcgtttgaagaaaaaaaaaaagtgagtTTCGGGAATGTTCTCTCATGTAGCCTACCAGGACGTTTAAAATTAGTGTCATCTCTAACGAACACTCACCAGACAAGGTTAAGCTAGTGATGTTTAGGTATCTAGTCTAGACCTATACAAACTAGATAACGTGCACACGTTAGAGGACTAAAGCGCTCACACAGTAACCATGTCAAAGGTCATCTCTAGTATAGAGAGACCTGTCTTTTTAAAGAGCATTCCTCTTAAAAGCGTAGTGGCTAATTTAGTTTTTACCTCCTCTTATCCCAGGAGTGAAGGCTAAAATACTAAAGGGAAGTATTACATCTTGTCACTACCACGGGTGTGAGAGAGTGCATGTAATTGGCTGGCTTTGTTTTACCAACGTGTATTGATTTTCATATCATTGCACAGGTCGATACTGAACACAGCCATTACCACAGCCTGACCTGCATTATTTGAAGAGCCACGTCAGTGTAGTATTGATGTCTTGCAAATGTGAATTACCCGTGTTCAGATTTTTAAAGGAAACGTAAACCTTTcaacttgttttttttgttttttttttgccgtTGATAAATACACATAAGAAATATTGCTGTATCAAAAATGTATTGTCACATTTTCTGTTTTTATAGCATCTGTTGTTGCACTGAAATGAAGGCATACAAGCTAATAGCTGGTTAATGACAGCtgatatacactaccagtcaaaagtttggacacacttacacattccaggttttttatttattttttctacattgtaaaatcatagtgaacacatcaaaactatgaaa
>XM_021603601.2
AGTAGTGGGCCATAATTACGTCAGCGCCTCTGCTTTTTTCTTCATTCAATTAGTTAGAATGGTTTTAGGTGCGGGTGCTGAACATTATAGTCTTGCCGGTAAAAACGTTTACTAGCAGTACTTTTAATATTGTAACCAGAGAGGTTTCAAGTGCCGTGTGGAATCATGTTCTACATTGATTCCCATTAAAACAGCACGCATTTTTCTGTCACTTATCAAGACGCAGCATCACAGACACAGCATCACAGACACCGCAGGACACGACTAGCAGCGGAACGACAGAGGAAGGCGAACATTGTGAGGATATCTGGTCTTTTATCGGCGTTATTGGTTATTTTCTTAGTATTAGAAATGTTTCAGGACCACTGGTTTGGTATCTGGTAGGAATAGGTTATTGTAGCTGATGAAATGACGAAGATATGTTATATAAGGCGAATAACGGAGATCAGACAGAATTTAACGTTGGCCTCACAAGAATCGCATGTGATACCTCGACTGTACCGCTCTCTAGTATGGTACATCTTTAGTTTAGGTAGCTATCCAGATAGCTAATAATACTTACTGGATTTGTTTTTCTTGGCACACGGACGTGATTTTACAGTTACATCTAATCTCGGATAGATTCAACTAACGTTAGTTTGGTAGCCGTTTTAAATGCTGGTCTACCCGGTATTGTGTAAATTCAATTTAGCGCGCTAGTCGGCtaacaagctaacgttagctacaaaATAAGAATTGCCAAAATTCTGGCCAATGTTTACTAGGTCATAGAATACAGTAGCTTGTAATTCTAATAATTATAGCTAGGTAATTAACGTTGGCTATTAAATACATCCAGCCGGTTTACCCATGGTTTTTGTAGGTTTATAATCCAATCAGACATAAATGATCTTCATGTGAAATGAACCCACGTCCTAATTTAGAACAGAAAGAATTAACATTAGGCCACTTGAGACTAGGTTAAGCTGCTATATAACTAGCTAGATACAGTAGTTTGGACGCGTCGGGATCTTGCCTGGCTACCTCCTGTACAAAGAAAACAcgcagatcatactgtctgtgtCAGTTTTCTAAATCGCCGTTTTCCGTGCGGACACAATGGACAGTCACACGGATGATGACAGTATGAGAGTCGGGGAGGTGGAACCCATGCCTGGCTATACGGGTCTCCTAACGAGAGCGTCTACTGTGATGCTCAGTGCCTTGAGAGACTGCAGCGCGTGCGGTCTAGAGCTCTCTAAAAGGACGCTCCTGGATAACGCTTATATTACATGGACCGAAATCGGCCTTTTCTTCATGTGCGCCGTTATGTGGACGCAGATACGACGGGGACTAACAGAATGTCTGTTCAAGCCGTTTGCACAACGGTGTTGTCTCCAGCCCAAAGATACTGCCAAGATGCCAGAGAGCGCGTGGAAGCTGGTCTTCTACACCATGTCCTGGTCCTACAGCACCTACCTGCTCTTCTTCACCAACTACACCTTCTTCCACGACCCGCCCTCCGCATTCTATGACTGGAAGAGTGGCATGACGGTGCCCACGGACATCGCCATCGCCTACCTGATCCAGGGCAGTTTCTACGGACACTCCATCTATGCCACGGTCTACATGGATGACTGGAGGAAGGATTCAACCGTCATGGTGGTGCACCACGTTGTCACTCTGGCCCTCATCACCTTCTCCTACGCTTTCAGATTCCACAACATTGGGTTACTGGTGCTGTTCCTCCACGACATCAATGACATCCAGCTGGAGTTCACCAAGCTCAACGTCTACTTCAAGACCCGGGGAGGGGACTACTACCTCATCCACGACATCTTGTCCAACATGGGCTCTGTCAGCTTCAGCATCacctgGTTTTGGTTCCGTCTCTACTGGTTCCCTCTGAAGGTTCTGTACGCCACCTGTGTGTCCAGCCTCCAGTCCGTCCCAAACATACCCTTCTATTTCTTTTTCAACAGCCTCCTCTTGACACTCCTCTGCATGAATATCTACTGGTTTTTGTTCATAGTGGCGTTTGTAGCGAAGGTCCTGACGGGGCAGATGAAGGATGTGAAAGACCTGAGGGAGTACGAGGGTGAGGAGGGAGCTCAGAGGGCTGCAGCCCTGCTCGCGGCCCAGCAGCGGCTGCAGAGTGAAGATGCAGGACATCTCAACAACTCTGCTGAAGGGAAACACGTGCAGAACGGGATCACCAAGGAGAAGCATCTGTAGAGGCCTCTCTAGTTCCACCATCTGGCACGACCTAGATTGTTTCAGACTTAGCTCTAAGTGACTCTCGGGGTCTCGCGAAAAGGATGAAAAAACAAttgatcatttttttttttttttttttttttttttcatcgtGTTCTatagattttttatttgattatatCGCTGTGAATGTTATTTAAGGTGACTTTGTCTTATATTAACATTAcgtttgaagaaaaaaaaaaagtgagtTTCGGGAATGTTCTCTCATGTAGCCTACCAGGACGTTTAAAATTAGTGTCATCTCTAACGAACACTCACCAGACAAGGTTAAGCTAGTGATGTTTAGGTATCTAGTCTAGACCTATACAAACTAGATAACGTGCACACGTTAGAGGACTAAAGCGCTCACACAGTAACCATGTCAAAGGTCATCTCTAGTATAGAGAGACCTGTCTTTTTAAAGAGCATTCCTCTTAAAAGCGTAGTGGCTAATTTAGTTTTTACCTCCTCTTATCCCAGGAGTGAAGGCTAAAATACTAAAGGGAAGTATTACATCTTGTCACTACCACGGGTGTGAGAGAGTGCATGTAATTGGCTGGCTTTGTTTTACCAACGTGTATTGATTTTCATATCATTGCACAGGTCGATACTGAACACAGCCATTACCACAGCCTGACCTGCATTATTTGAAGAGCCACGTCAGTGTAGTATTGATGTCTTGCAAATGTGAATTACCCGTGTTCAGATTTTTAAAGGAAACGTAAACCTTTcaacttgttttttttgttttttttttgccgtTGATAAATACACATAAGAAATATTGCTGTATCAAAAATGTATTGTCACATTTTCTGTTTTTATAGCATCTGTTGTTGCACTGAAATGAAGGCATACAAGCTAATAGCTGGTTAATGACAGCtgatatacactaccagtcaaaagtttggacacacttacacattccaggttttttatttattttttctacattgtaaaatcatagtgaacacatcaaaactatgaaa

Function

NR:

description
ceramide synthase 1 isoform X1

GO: NA

KEGG:

id description
K04710 CERS1, LASS1; sphingoid base N-stearoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603602.2 False 2166 mRNA 0.44 7 59665915 59709687
XM_021603601.2 True 3227 mRNA 0.43 7 59665915 59709692

Neighbor

gene id symbol gene type direction distance location
LOC118964629 NA coding downstream 53877 59608382 ~ 59612038 (-)
LOC110524184 LOC106613666 coding downstream 102239 59468780 ~ 59563676 (-)
LOC110524182 LOC106613664 coding downstream 217718 59359886 ~ 59448197 (-)
lsg1 lsg1 coding downstream 527486 59131152 ~ 59138429 (-)
tmem44 tmem44 coding downstream 534904 59125081 ~ 59131011 (-)
cope LOC106613672 coding upstream 923 59710615 ~ 59714101 (-)
LOC110524192 LOC106613675 coding upstream 35784 59745476 ~ 59754819 (-)
LOC110524193 LOC106613676 coding upstream 63069 59772761 ~ 59776656 (-)
LOC110524194 LOC106613679 coding upstream 78052 59787744 ~ 59801204 (-)
LOC118964630 NA coding upstream 195153 59904845 ~ 59914276 (-)
G422089 NA non-coding downstream 27 59664718 ~ 59665888 (-)
G422088 NA non-coding downstream 1305 59663321 ~ 59664610 (-)
G421951 NA non-coding downstream 292310 59372985 ~ 59373605 (-)
G421950 NA non-coding downstream 293161 59372319 ~ 59372754 (-)
G421948 NA non-coding downstream 294416 59370649 ~ 59371499 (-)
G422125 LOC106613673 non-coding upstream 9017 59718709 ~ 59734459 (-)
G422138 NA non-coding upstream 30590 59740282 ~ 59740548 (-)
G422139 LOC106613674 non-coding upstream 31712 59741404 ~ 59741629 (-)
G422155 NA non-coding upstream 51258 59760950 ~ 59761159 (-)
G422157 NA non-coding upstream 52481 59762173 ~ 59762438 (-)
G420982 LOC106613655 other downstream 629616 59026103 ~ 59036299 (-)
G420421 NA other downstream 1251772 58413128 ~ 58414143 (-)
G420193 NA other downstream 1551855 58112387 ~ 58114060 (-)
G419714 NA other downstream 1959979 57699745 ~ 57705936 (-)
G422347 NA other upstream 391073 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1349302 61058949 ~ 61081864 (-)
G424474 NA other upstream 1907178 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1940275 61649967 ~ 61651775 (-)
G424502 NA other upstream 1949341 61659033 ~ 61659585 (-)

Expression


Co-expression Network