cope (LOC106613672)


Basic Information

Item Value
gene id cope
gene name LOC106613672
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59710615 ~ 59714101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603603.2
AGTTGTCTTGAACGTGTGTGATGACGCGTCGGTGCTACGTGTCTAGGAAGTAATCCAGTCAACATGGCGACGCAACAAGGAGATGTTGATGAACTCTTCGACGTGAAAAATGCTTATTACATTGGCAGTTATCAACAATGTATCAATGAAGCTCAGAAGGTTAAGCCAACAACACCTGAGAAGGAGGTTGAGAGAGACATGTTTCTGTACAGAGCCTATATTGCCCAGAGGAAGTATGCTGTGGTGATGGATGACATCAAGGCCAGCTCCTCACCAGAACTCCAGGCTGTCAAGATGTTTGCTGAGTATCGCGCCAACGAGGGCAAAAGGGATGCCATTGTGGCTGAACTTGACAAGAAAATGAGCAAGAATGTAGATGTGGCCAACACAACCTTCCTGCTCATGGCTGCGTCCATTTACTACCATGAGATGAACTCGGATGCTGCCTTGAGGACCCTGCACCAGGGAGAAAGTCTGGAGTGCATGGCAATGACCATTCAGGTGCTGCTGAGTTTAGACCGTGTTGATTTGGCAAGGAAAGAGCTGAAGAAGATGCAGGAGCAGGACGAGGATGCCACACTGACCCAACTGTCCACGGCCTGGGTCAACATCGCTGTTGGAGGAGAGAAGCTGCAGGATGCTTACTACATCTTCCAGGAGATGTCGGATAAGTACTCCCCCACTTTGCTTCTGCTGAATGGCCAGGCTGCCTGCCATATGGCCCAGAACAAGTGGGAGGAGGCAGAGGGGGTTCTCCAGGAGGCACTAGACAAGGACAGCAGCCACCCTGAGACTTTGATCAACCTGATTGTGCTGACCCAGCACTTAGGCAAAGCTCCTGAGGTAACCAACAGGTATCTCTCTCAACTGAAAGATGCCCATAGAGCTCACCCCTTCCTTAAAGACTACCTGACCAAGGAGAATGAATTTGACAGACTGACGATGCAGTATGCTCCCACTGCAACTGCTTGAGACAATGGAGACATCTGTTTGGACCCCAAAACATTATTAATACTGGACACACAACTGATTTCTCCATATCTTTTTGTCTATCAATATGGGAAACGCTAAACTGTATAGATTAAAATTGACATGAATGTTTAGAAATTTGAATAATAAAAATATTGAATAATAATATTACTGTACACATATTTTCTTTATACTCACACGTACAGGTATTTGTAGTACATGAAATGTCCCTTCTGATAATGTCTCTTTTGATGTTTGTAACATCTGCATTTCTCTCATTGAGAAATGCTTCCTGTCACTCTGTTTCCTTTTAGCATTCCTCTAAAATGTACAATAAATGTTTTATGACCCGGTT

Function

NR:

description
coatomer subunit epsilon

GO:

id name namespace
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K17268 COPE; coatomer subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603603.2 True 1324 mRNA 0.45 10 59710615 59714101

Neighbor

gene id symbol gene type direction distance location
LOC110524188 LOC106613669 coding downstream 923 59665915 ~ 59709692 (-)
LOC118964629 NA coding downstream 98577 59608382 ~ 59612038 (-)
LOC110524184 LOC106613666 coding downstream 146939 59468780 ~ 59563676 (-)
LOC110524182 LOC106613664 coding downstream 262418 59359886 ~ 59448197 (-)
lsg1 lsg1 coding downstream 572186 59131152 ~ 59138429 (-)
LOC110524192 LOC106613675 coding upstream 31375 59745476 ~ 59754819 (-)
LOC110524193 LOC106613676 coding upstream 58660 59772761 ~ 59776656 (-)
LOC110524194 LOC106613679 coding upstream 73643 59787744 ~ 59801204 (-)
LOC118964630 NA coding upstream 190744 59904845 ~ 59914276 (-)
klf2a LOC106613686 coding upstream 264906 59979007 ~ 59981619 (-)
G422089 NA non-coding downstream 44727 59664718 ~ 59665888 (-)
G422088 NA non-coding downstream 46005 59663321 ~ 59664610 (-)
G421951 NA non-coding downstream 337010 59372985 ~ 59373605 (-)
G421950 NA non-coding downstream 337861 59372319 ~ 59372754 (-)
G421948 NA non-coding downstream 339116 59370649 ~ 59371499 (-)
G422125 LOC106613673 non-coding upstream 4608 59718709 ~ 59734459 (-)
G422138 NA non-coding upstream 26181 59740282 ~ 59740548 (-)
G422139 LOC106613674 non-coding upstream 27303 59741404 ~ 59741629 (-)
G422155 NA non-coding upstream 46849 59760950 ~ 59761159 (-)
G422157 NA non-coding upstream 48072 59762173 ~ 59762438 (-)
G420982 LOC106613655 other downstream 674316 59026103 ~ 59036299 (-)
G420421 NA other downstream 1296472 58413128 ~ 58414143 (-)
G420193 NA other downstream 1596555 58112387 ~ 58114060 (-)
G419714 NA other downstream 2004679 57699745 ~ 57705936 (-)
G422347 NA other upstream 386664 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1344893 61058949 ~ 61081864 (-)
G424474 NA other upstream 1902769 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1935866 61649967 ~ 61651775 (-)
G424502 NA other upstream 1944932 61659033 ~ 61659585 (-)

Expression


Co-expression Network