LOC118964630


Basic Information

Item Value
gene id LOC118964630
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59904845 ~ 59914276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051823.1
TAttaaccaaattcgacactctttgacctccatacaaaaatcgccacctgctggagaagacagattttgggcCCAATTATCCCTCTGATAAACCACGACTCGGCCCCGTGGGAATGAGGGTCGCCGTTTACGGTGAAGTTGGACACAGTGTAATTGCTACAAGGTTAATCTCAAAACGGATACATCTAATCAGGGATATGTGGATGTCATTGCCAATAGGAGAAACACTTCACAAGCCGGACAAACCCCATTCCAGGACCTGAGCGACCTATTGTTATCCTTAGAGGACTCGGTGAGTGACCAACCCAATGACGTCATCAACAAAAAGCTGGAGAGGGATGACCCACCACCAGAGGGCTTTcgagggggtggggggagcaGGTTCTCCCTCCACCTGCTGCAGCTACCAGCCAACCTCCAGCCCTGAGCTGGACTCAGACATAGTCAGTTGAGTCCACATCACAGAGGAGCTCACAGAGCGCGGCCCTGAGCCGACTGGCTGTCATAGAGAACCGCATCCGAAATCGTCAACAGGCCAGGGATGGACCAGCGCTGTTGGCTGATAGGCGTATACCAACAGCCCCCCAGGAGAAGGAGAAGCCCCTGCCTGCCCAGTCCAGCAGTGACCTCAGCATGAAGGGGAAACGCTTCCTGAAGAAGAGAGTGCATGTATCACCTGCTGTAGCGTCTAAGGAGAAAGGCCTGGATCTTGATGCCACGCCATAGGGTAGTTCCAAACCCGGTACTCCAATAAGGGTGGCCGGTAGAGGTGTGACTCTGGACAGCGATGAGGAGGATATGAGGAAACTCCTGGTGGGCTCTTTTGAGTCGTCAGAGTATAGCCTGCACAAAGAAGCAAGATAATCTTCACAGATGACAACTAGAAAGTTGTTCATCCAAAGCAGCCAGGTTTCCCCCTCACCTCCACTGGCAGACCGATCATCTTCAGTCAGAGCCCAGTCCcgctctccaccctctcctccgtgCAGCGGATCACCCAGTCGCTTCTCCAGCCGAGCCCTGGACCAGCGCAGTCCTTTTCTCTCCATCCGCAGTGCCTCAgtagtcctccctccatcaccctaTCCTCCCTACGCCCCCTCCCCAGGCAGTCAGGGATCCCCACGGGCCAGGCACCTCAAACCCTCCGGTCCTCAGTGTCACCCCTCAGTGAGATGTGCTCCCTGGTGGAGCTCTTCCCTGAGGCCCTGGACGTTTTGGCAGAGCTCTTCTCTGAGGACCTGCCATCAGTGAGAGAAGTGGAGTCTCTGATGAATTCAACATTAATATTATGCCACTGGACGACCTCGCACCGGTCACGCTTGGAATgtcggagaaaaaaaaagaaaaaagtgtgtgataatgacagcCAGTGGTACTGGAGGTGTGAGGAGAGGATCCCATCAGAAGAGCCCAGGGAGGACTACAAGAGTGACTGAGAGTGAGATCAAGACTGAAACAGACCGGAGTAGTGTCAGCGAGATCTCCGAGCACctgggagacagagacggggacaAAGATGCGTTGGGAGGTCAGCGAGGTCATGGACTACAGCGTCTCAGACACATCTTGGAGCGACAAGTACTCCAGTGTCTCAGAGAAGGACAATCAGTCCCACATCAACCACAGACTACAGTAAAATGGCTGATTAATTCCGTGGCAGCAGGGCTTTCTATTCCAGGTCATCTCGCTCCCACTCTGTGGCTGAAACTATCATgccgtctcaagttttgaagagACGCTCGCccaggtgtgtgagagaggcccCAGTGCAGACCCAACCAGACTGACTGGCCTTCACCTTGTCCGAGATGCAGACCCAACCAGACGGACTGGCCTTCACCTTGTCCGAGATGCAGACCCAACCAGACGGACTGGCCTTCACCTTGTCCGAGATGCAGACCCAACCAGACTGACTGGCCTTCACCTTGTCCGAGATGCAGACCCAACCAGATGGACTGGCCTTCACCTTGTCCGAGATGCAGACCCAACCAGACGGACTGGCCTTCACCTTGTCTGAGATGCAGACCCAACCAGACTGGCCTTCACCTGGTCCACCGGTTTGTCCACTAACCCTCAGTGCATACAGCCCTGCTGTGTTTGCACTCAACATGCTGAGGCAGCAGCTGGCTCTCACCAGACACTTTGTCCAGACCAGCCGCCACCTCCACTCCTACAGTCCCTGCAGACTACACATACACCACCCTGGAGGACACCAAGGAGGTAGGCTACTCTAATGCCCAATCATAAATTAATCGCTACACACTCGTGTAGTACTGAAGGAATAATTGATAGTCAAACGCCGCTCCTTGTCACTCTTATCTGAGGGACTGTCGACCATATTTGCTGTGGACCCAATTGCAATTCACACTTCTGTGCATTTGTAGTCATCATGATCCAAGACAAAAATTGACATTTTCAGAGTTTTTCCACCTTTCCTGAATTGACTAGATTTGTAGTGGGATTGAATCTTGGAGGAGATTCTTCAGGAAATGATGGAGCTCCACTACATCTGACACTGAGAATATATGGTACTTTACCATTCTCTATTAAAAAACATTTAATGTATTGGGGCTTGGGAAATTACCTATCATCAAAAAGGACAATCTATTCAAATGTGTCATACTTTCTATAGACGTATCAGTGGAGACCCGTTTTGAGCCCCCctattttgcatgttattttggcattaatagtGTCTCACAtatgtttgcaaacaatgtaaaaaaaaaaatatatatatatatatatatatatcattgagttaataaagacacata
>TU478432
TCACCTGCTGTAGCGTCTAAGGAGAAAGGCCTGGATCTTGATGCCACGCCATAGGGTAGTTCCAAACCCGGTACTCCAATAAGGGTGGCCGGTAGAGGTGTGACTCTGGACAGCGATGAGGAGGATATGAGGAAACTCCTGGTGGGCTCTTTTGAGTCGTCAGAGTATAGCCTGCACAAAGAAGCAAGATAATCTTCACAGATGACAACTAGAAAGTTGTTCATCCAAAGCAGCCAGGTTTCCCCCTCACCTCCACTGGCAGACCGATCATCTTCAGTCAGAGCCCAGTCCcgctctccaccctctcctccgtgCAGCGGATCACCCAGTCGCTTCTCCAGCCGAGCCCTGGACCAGCGCAGTCCTTTTCTCTCCATCCGCAGTGCCTCAgtagtcctccctccatcaccctaTCCTCCCTACGCCCCCTCCC

Function

NR:

description
PREDICTED: uncharacterized protein C19orf44 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051823.1 False 2780 mRNA 0.51 5 59904845 59914276
TU478432 True 433 lncRNA 0.56 2 59912209 59912709

Neighbor

gene id symbol gene type direction distance location
LOC110524194 LOC106613679 coding downstream 103641 59787744 ~ 59801204 (-)
LOC110524193 LOC106613676 coding downstream 128189 59772761 ~ 59776656 (-)
LOC110524192 LOC106613675 coding downstream 150026 59745476 ~ 59754819 (-)
cope LOC106613672 coding downstream 190744 59710615 ~ 59714101 (-)
LOC110524188 LOC106613669 coding downstream 195153 59665915 ~ 59709692 (-)
klf2a LOC106613686 coding upstream 64731 59979007 ~ 59981619 (-)
LOC110524206 ap1m1 coding upstream 202254 60116530 ~ 60134272 (-)
LOC110524209 LOC106613694 coding upstream 368098 60282374 ~ 60289431 (-)
lpl lpl coding upstream 383928 60298204 ~ 60306640 (-)
LOC110524214 LOC106613699 coding upstream 480748 60395024 ~ 60398862 (-)
G422206 NA non-coding downstream 58632 59845991 ~ 59846213 (-)
G422205 NA non-coding downstream 60582 59844060 ~ 59844263 (-)
G422200 NA non-coding downstream 62811 59841911 ~ 59842034 (-)
G422194 NA non-coding downstream 79802 59824705 ~ 59825043 (-)
G422191 NA non-coding downstream 81196 59823423 ~ 59823649 (-)
G422208 calr3 non-coding upstream 1353 59915629 ~ 59917890 (-)
G422254 NA non-coding upstream 7910 59922186 ~ 59922634 (-)
G422255 NA non-coding upstream 13759 59928035 ~ 59930514 (-)
G422286 NA non-coding upstream 85890 60000166 ~ 60000436 (-)
G422294 NA non-coding upstream 100591 60014867 ~ 60015099 (-)
lsg1 lsg1 other downstream 766588 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 868546 59026103 ~ 59036299 (-)
G420421 NA other downstream 1490702 58413128 ~ 58414143 (-)
G420193 NA other downstream 1790785 58112387 ~ 58114060 (-)
G419714 NA other downstream 2198909 57699745 ~ 57705936 (-)
G422347 NA other upstream 186489 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1144718 61058949 ~ 61081864 (-)
G424474 NA other upstream 1702594 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1735691 61649967 ~ 61651775 (-)
G424502 NA other upstream 1744757 61659033 ~ 61659585 (-)

Expression


Co-expression Network