Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524206 |
| gene name | ap1m1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 60116530 ~ 60134272 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ap1m1 | Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development and digestive tract development. Predicted to be located in Golgi apparatus and clathrin-coated vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in several structures, including central nervous system; digestive system; eye; gonad; and heart. Orthologous to human AP1M1 (adaptor related protein complex 1 subunit mu 1). |
| description |
|---|
| PREDICTED: AP-1 complex subunit mu-1 |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0030131 | clathrin adaptor complex | cellular_component |
| id | description |
|---|---|
| K12393 | AP1M; AP-1 complex subunit mu |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021603647.2 | True | 2414 | mRNA | 0.45 | 12 | 60116530 | 60134272 |
60,102,000
60,104,000
60,106,000
60,108,000
60,110,000
60,112,000
60,114,000
60,116,000
60,118,000
60,120,000
60,122,000
60,122,000
60,124,000
60,126,000
60,128,000
60,130,000
60,132,000
60,134,000
60,136,000
60,138,000
60,140,000
60,142,000
NC_048569.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| klf2a | LOC106613686 | coding | downstream | 134911 | 59979007 ~ 59981619 (-) |
| LOC118964630 | NA | coding | downstream | 202254 | 59904845 ~ 59914276 (-) |
| LOC110524194 | LOC106613679 | coding | downstream | 315326 | 59787744 ~ 59801204 (-) |
| LOC110524193 | LOC106613676 | coding | downstream | 339874 | 59772761 ~ 59776656 (-) |
| LOC110524192 | LOC106613675 | coding | downstream | 361711 | 59745476 ~ 59754819 (-) |
| LOC110524209 | LOC106613694 | coding | upstream | 148102 | 60282374 ~ 60289431 (-) |
| lpl | lpl | coding | upstream | 163932 | 60298204 ~ 60306640 (-) |
| LOC110524214 | LOC106613699 | coding | upstream | 260752 | 60395024 ~ 60398862 (-) |
| LOC118964632 | NA | coding | upstream | 279891 | 60414163 ~ 60426534 (-) |
| ccl44 | LOC106613702 | coding | upstream | 325575 | 60459847 ~ 60462194 (-) |
| G422360 | NA | non-coding | downstream | 2957 | 60112935 ~ 60113573 (-) |
| G422359 | NA | non-coding | downstream | 4694 | 60111620 ~ 60111836 (-) |
| G422357 | NA | non-coding | downstream | 5556 | 60110676 ~ 60110974 (-) |
| G422356 | NA | non-coding | downstream | 6428 | 60109871 ~ 60110102 (-) |
| G422346 | NA | non-coding | downstream | 16158 | 60100136 ~ 60100372 (-) |
| G422363 | LOC106613690 | non-coding | upstream | 544 | 60134816 ~ 60135590 (-) |
| G422384 | NA | non-coding | upstream | 16110 | 60150382 ~ 60150691 (-) |
| G422365 | NA | non-coding | upstream | 46388 | 60180660 ~ 60182387 (-) |
| G422388 | NA | non-coding | upstream | 48352 | 60182624 ~ 60182860 (-) |
| G422415 | NA | non-coding | upstream | 83099 | 60217371 ~ 60217664 (-) |
| G422347 | NA | other | downstream | 15474 | 60100765 ~ 60101056 (-) |
| lsg1 | lsg1 | other | downstream | 978273 | 59131152 ~ 59138429 (-) |
| G420982 | LOC106613655 | other | downstream | 1080231 | 59026103 ~ 59036299 (-) |
| G420421 | NA | other | downstream | 1702387 | 58413128 ~ 58414143 (-) |
| G420193 | NA | other | downstream | 2002470 | 58112387 ~ 58114060 (-) |
| LOC110524239 | LOC106573579 | other | upstream | 924722 | 61058949 ~ 61081864 (-) |
| G424474 | NA | other | upstream | 1482598 | 61616870 ~ 61617244 (-) |
| G424499 | LOC106613729 | other | upstream | 1515695 | 61649967 ~ 61651775 (-) |
| G424502 | NA | other | upstream | 1524761 | 61659033 ~ 61659585 (-) |
| G424649 | NA | other | upstream | 1753926 | 61888198 ~ 61927422 (-) |
