LOC110524208 (LOC106613692)


Basic Information

Item Value
gene id LOC110524208
gene name LOC106613692
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60165608 ~ 60180274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603650.2
GAACACTGCCCCTTTTCACAAACTGTTTTCAGATGACATATGCGCAGTGGAGTTCCCTGTTCATAGTGCGCCATTTTGTGACAGTAGGCCGCTTGTTTCGTGCAAGAGATTAGTTAACCTGTGCTTGCAAACAAAATAACGTTTTCTCAGTGTAATCATGGCTGAAAACTATTCGACGGGGGAAGCAGGGGGCGTTGAGATTCCTGAGGGAGCAATTCGTAAATTGTCGGAGCTGAGAGTCATTGACTTGAAAGCAGAATTAAAAAGACGAAATCTGGACGCCACTGGCATCAAGAGTACgctgacagagagactgaaaaagGCGATTGAAGAAGAGGGTGGAAACCCAGATGAGATGGTGGTTGTTCTCGATGCAACTCCTAAGGCGGCACTGGCTAAACGGACCTCCAAAGGGAAAAGACCAGAGAACGATGAATCAGAGGACTGCACCATTGAGGAAGATTCAGGTGATGGCCAGGATGACAACATGCAGGACATGGACATCCTGGATATGAATGTGCTTGATGAGGCTGAGAATGACAACAGTATGCCGGCAGAGGAGGAGTATGACACAGATGAAGTCCTGAACTCTCCTTCAGATGAAGTCAACACCGAGATCCTGGCTGACGAAGAGGCCATGAATGAAGATGAACGCGAACGCAATGGAATCTCTGGCTCTCTTGAGCTGATGCGTGAAGCCAAACCTGAAGAGGTTCAAGAGAAGGATCCGAAGCCCAAAGACTCAAAGGAAGAAATAGAAACTGATAAAGTAGCCGGGTCTTGTTTATCTGAGCCGCTAAATGAAGAGCGCCAGGAGCCACCGACAGAAGATCAAGCCACCATCGGGGACAAGGTCAATGTTGCCGAGGAAGACAATTTGGAGCCTGAACTGTCGACTAGCGACATGGACGTTGCTAAGCTAACTgcgagtgaaatgaaagacactGGCGACAAACAAAATGTTCCCGACGAGGCAGATGACGCTGAAAGCGAGTGCGCTCAGGCTGTTAGCGTAAGCGAGCAGGGCGCGGGTGAAACCGAAAGCGCTGTTGATTCGGAAATGGTCTCTAAGGCTGAGGGTGAGGAGAAGACTGAAGAGAATGCTGCAGAATCAACGACAGTGAAAGAGTCCTCTTCTGTTGAGGGTGATGATCAGAAAAAGAGTTCTGATGAGGAAAAGGGTAGCAAGCCTGACTCAAAAGATGAAAAGGGCCCTGCAGGTAGTGCTCCAGCTAGTAGTGGCAGAAACCTGTGGGTTAGTGGCCTCTCCTCCAACACCAGAGCAACTGATCTAAAGACTCTGTTCAGCAAGCACGGAAAGGTCGTTGGCGCTAAAGTGGTGACTAATGCCCGGAGCCCCGGGGCTCGCTGCTATGGTTTTGTCACCATGTGTTCCACAGAGGAGGCCACCAAGTGTATCAGCCACCTGAACAGGACCGAGCTCCATGGTAGAATGATCTCTGTGGAGAGGGCTAAGAACGAGCCTGCTGGCAAGAAGCCTGCTGACAAGAGCGATGCTAAGTCTGGCACCGACAGGAGACACTCCTCAGACTCCAAGTCCGATGCCAACAAGGATGAAATGGCTGAAGGTGAAGTCGGAAAAGATGGCAAACGTAATGAGAGGACAGTGGTGATGGACAAGTCCAAGGGAGAGCCTGTCATCAGCGTGAAAGCCAAAAGCAAAGACCGGAGCTCCAAGAGTCGCGACCGCAAGTCCCCAAGCAAAGAGAAGGACATCCTGTCGTTTGACCAGATCAAGGAGCAGCGTGAGCGCGAGAGACGGAGGCAGCGGGAGAGGGAGGTCAGGGAGGTGGACAGACGCAGGCCCTCTGGGGAGCGCGGCAGTGGCCCAGACCGTGGCAGCGTGGACAACCGCACAGAGCGTGAGCGTATCCGCCTGTTCCGGGAGAAGGAGGAGCGCGAGCGCCTCCTGCGGAAAAGGAACTGGCTAGAGGTGGAGAAGGAGCGGCTGAACTTTGACCGCATGGAGCGCGAGTTCCTGGAGCGCGAGCGTCAGCGTGTGGAGTACGAGCGCCGGCGTGAGCAGGAGAGGATCCAGCGGGAGAGGGATGAGCTCCgcaggcagcaggagcagctgcgCTTCGAGCAGGACCGCCGCCCCCTCAAGAGGCCCTACTCCGACCTGGACAACAGACCTGCTGCTTGTAGGAAAGACGACTGGCAGGACAAGAGGCTGGCTATGGATGACCGCTATGGGGGGCGCTCAGACTTCGGTCGCCAGGAGCGCTACCAAGACATTGACCACAGGGACCGCGGTCGCTACCAGGACGATGCCGTCATTGACAGGAGGGACACTTCACGGGCTGTAGTTGCAGACAGGGATAGCACGCACTTCTCGGACCGTACCGAGAGGCACGGGAGGGACACCTGGACCGCAGCAGGAAGTTATGACAAGCGTACTATTAATCCAAGGGAGGGCCGTGACTGGGACAGAACCTGGCAAACCGGTCGAGACGGGGGCATCCCAGGCCAAAGTCACATGGGGGCACGGGGAGGAATGGCGAGTCGTGGAGGAGGCTACATGACAACCGGGACCTCCCAGTCCCTCTCTGGAGCTCTGAATCGTCAGAATCAGATGATGCAGGGTGGCGGGGCCTTCGGTCGCCGCTACTGAGGTCTGAACACCCTTGTTCCCAGTCACATGTTTAGATGTATTGTGAAACTGTCTGCAGCATGTATATTGCTCACAAAAGCTTTGTGAATTCGATGTTGCTTTTatagaccctttgacttttcttcCTCCTTTTAAAATTTAAGATTGCAATTGAATTTAACTGAACATCTGAGTTTTAAATGTCTGATCAGATCATTCATAGTTTTTTCACTCTgaattacctttttttttttcaaatagaAAATTGATAAATTCTGTTCAatttgtgtgttttgtatgtggTTGAATCTCGGTAAGAAATGCTCAGGAATGCGTCTGCTTAAACTTGGTTGCGGAAAAGTATGAACACAATGGTTATGATTGCATTTCAGGCTTAATTTCAATTACTGTCAAATGTGGCATTGTCTTAGTGGTAATGTACAAATCTTTTAAGAATTTGTATTGGATAGTAGTAAACGATTAACTGTGTTTGATTCAACTGCAGTTGTACAATACCACCACTGGATGGCACCAGATGGCTATTTTCTGTGAGATGAAAATGCTGCCTAATAAAGTTTTCTTTTTGCAGGCCAAGGGcaaacatttttatttacttTCTCGTCATGATTGTTTTTAAGAGCAATGTTTTGCAATCAAATATTACTAACACAGGTTTGGTTTGTGGTAGATAACTCTCCACAAATCAAAAAGAATTAGACCCAAGAGCTCTGGGCTCTTCATGCAACCAGAGACATAAGTACATTAATCATCTTGCCCTAGTGAAATGTGTTATGTGGGTATTTTCACCTACATACTTGTAGGCTACATGTTTGGagtgttacattttttttgtgaccATCTTTTCATAATGAGCTTAAGAGTGTTAAAATAACCTGATTAGTTTGGCATGATTGTTGTCTATCTACTCCATAGGGCCTAGGCCACACTGATGTAAACAGTTGTTTAAAATTGACGTTTTGTTTAATCTACTCGATTTTCTCCTAACCTACCAGCAGTTTTCCCCTCTAGCAGCCTGCCATAATCTTTGGTGTCTATCTTGCCCAGCTCAGAGATTAAAGATTAATCTTTGGTCCAGTCATAGAATTAGCATACTATGATAGACATGAACCTTAAGGTcagccatcttggtcagggagttggacagacaagttgtaaatgcaacaagtactgatattgtatcataatAGCGTTCAGTGTTCCAAGAAAAACATTTAGACATTTACTGGCTGTTTGTGTATTTTAGAGGCTATTCATATAGAAATTGTATTTATAGTGACAGTATTTTGGGTAGACAGTGTAATAATTATCACATGCG
>XM_021603651.2
GAACACTGCCCCTTTTCACAAACTGTTTTCAGATGACATATGCGCAGTGGAGTTCCCTGTTCATAGTGCGCCATTTTGTGACAGTAGGCCGCTTGTTTCGTGCAAGAGATTAGTTAACCTGTGCTTGCAAACAAAATAACGTTTTCTCAGTGTAATCATGGCTGAAAACTATTCGACGGGGGAAGCAGGGGGCGTTGAGATTCCTGAGGGAGCAATTCGTAAATTGTCGGAGCTGAGAGTCATTGACTTGAAAGCAGAATTAAAAAGACGAAATCTGGACGCCACTGGCATCAAGAGTACgctgacagagagactgaaaaagGCGATTGAAGAAGAGGGTGGAAACCCAGATGAGATGGTGGTTGTTCTCGATGCAACTCCTAAGGCGGCACTGGCTAAACGGACCTCCAAAGGGAAAAGACCAGAGAACGATGAATCAGAGGACTGCACCATTGAGGAAGATTCAGGTGATGGCCAGGATGACAACATGCAGGACATGGACATCCTGGATATGAATGTGCTTGATGAGGCTGAGAATGACAACAGTATGCCGGCAGAGGAGGAGTATGACACAGATGAAGTCCTGAACTCTCCTTCAGATGAAGTCAACACCGAGATCCTGGCTGACGAAGAGGCCATGAATGAAGATGAACGCGAACGCAATGGAATCTCTGGCTCTCTTGAGCTGATGCGTGAAGCCAAACCTGAAGAGGTTCAAGAGAAGGATCCGAAGCCCAAAGACTCAAAGGAAGAAATAGAAACTGATAAAGTAGCCGGGTCTTGTTTATCTGAGCCGCTAAATGAAGAGCGCCAGGAGCCACCGACAGAAGATCAAGCCACCATCGGGGACAAGGTCAATGTTGCCGAGGAAGACAATTTGGAGCCTGAACTGTCGACTAGCGACATGGACGTTGCTAAGCTAACTgcgagtgaaatgaaagacactGGCGACAAACAAAATGTTCCCGACGAGGCAGATGACGCTGAAAGCGAGTGCGCTCAGGCTGTTAGCGTAAGCGAGCAGGGCGCGGGTGAAACCGAAAGCGCTGTTGATTCGGAAATGGTCTCTAAGGCTGAGGGTGAGGAGAAGACTGAAGAGAATGCTGCAGAATCAACGACAGTGAAAGAGTCCTCTTCTGTTGAGGGTGATGATCAGAAAAAGAGTTCTGATGAGGAAAAGGGTAGCAAGCCTGACTCAAAAGATGAAAAGGGCCCTGCAGGTAGTGCTCCAGCTAGTAGTGGCAGAAACCTGTGGGTTAGTGGCCTCTCCTCCAACACCAGAGCAACTGATCTAAAGACTCTGTTCAGCAAGCACGGAAAGGTCGTTGGCGCTAAAGTGGTGACTAATGCCCGGAGCCCCGGGGCTCGCTGCTATGGTTTTGTCACCATGTGTTCCACAGAGGAGGCCACCAAGTGTATCAGCCACCTGAACAGGACCGAGCTCCATGGTAGAATGATCTCTGTGGAGAGGGCTAAGAACGAGCCTGCTGGCAAGAAGCCTGCTGACAAGAGCGATGCTAAGTCTGGCACCGACAGGAGACACTCCTCAGACTCCAAGTCCGATGCCAACAAGGATGAAATGGCTGAAGGTGAAGTCGGAAAAGATGGCAAACGTAATGAGAGGACAGTGGTGATGGACAAGTCCAAGGGAGAGCCTGTCATCAGCGTGAAAGCCAAAAGCAAAGACCGGAGCTCCAAGAGTCGCGACCGCAAGTCCCCAAGCAAAGAGAAGGACATCCTGTCGTTTGACCAGATCAAGGAGCAGCGTGAGCGCGAGAGACGGAGGCAGCGGGAGAGGGAGGTCAGGGAGGTGGACAGACGCAGGCCCTCTGGGGAGCGCGGCAGTGGCCCAGACCGTGGCAGCGTGGACAACCGCACAGAGCGTGAGCGTATCCGCCTGTTCCGGGAGAAGGAGGAGCGCGAGCGCCTCCTGCGGAAAAGGAACTGGCTAGAGGTGGAGAAGGAGCGGCTGAACTTTGACCGCATGGAGCGCGAGTTCCTGGAGCGCGAGCGTCAGCGTGTGGAGTACGAGCGCCGGCGTGAGCAGGAGAGGATCCAGCGGGAGAGGGATGAGCTCCgcaggcagcaggagcagctgcgCTTCGAGCAGGACCGCCGCCCCCTCAAGAGGCCCTACTCCGACCTGGACAACAGGAAAGACGACTGGCAGGACAAGAGGCTGGCTATGGATGACCGCTATGGGGGGCGCTCAGACTTCGGTCGCCAGGAGCGCTACCAAGACATTGACCACAGGGACCGCGGTCGCTACCAGGACGATGCCGTCATTGACAGGAGGGACACTTCACGGGCTGTAGTTGCAGACAGGGATAGCACGCACTTCTCGGACCGTACCGAGAGGCACGGGAGGGACACCTGGACCGCAGCAGGAAGTTATGACAAGCGTACTATTAATCCAAGGGAGGGCCGTGACTGGGACAGAACCTGGCAAACCGGTCGAGACGGGGGCATCCCAGGCCAAAGTCACATGGGGGCACGGGGAGGAATGGCGAGTCGTGGAGGAGGCTACATGACAACCGGGACCTCCCAGTCCCTCTCTGGAGCTCTGAATCGTCAGAATCAGATGATGCAGGGTGGCGGGGCCTTCGGTCGCCGCTACTGAGGTCTGAACACCCTTGTTCCCAGTCACATGTTTAGATGTATTGTGAAACTGTCTGCAGCATGTATATTGCTCACAAAAGCTTTGTGAATTCGATGTTGCTTTTatagaccctttgacttttcttcCTCCTTTTAAAATTTAAGATTGCAATTGAATTTAACTGAACATCTGAGTTTTAAATGTCTGATCAGATCATTCATAGTTTTTTCACTCTgaattacctttttttttttcaaatagaAAATTGATAAATTCTGTTCAatttgtgtgttttgtatgtggTTGAATCTCGGTAAGAAATGCTCAGGAATGCGTCTGCTTAAACTTGGTTGCGGAAAAGTATGAACACAATGGTTATGATTGCATTTCAGGCTTAATTTCAATTACTGTCAAATGTGGCATTGTCTTAGTGGTAATGTACAAATCTTTTAAGAATTTGTATTGGATAGTAGTAAACGATTAACTGTGTTTGATTCAACTGCAGTTGTACAATACCACCACTGGATGGCACCAGATGGCTATTTTCTGTGAGATGAAAATGCTGCCTAATAAAGTTTTCTTTTTGCAGGCCAAGGGcaaacatttttatttacttTCTCGTCATGATTGTTTTTAAGAGCAATGTTTTGCAATCAAATATTACTAACACAGGTTTGGTTTGTGGTAGATAACTCTCCACAAATCAAAAAGAATTAGACCCAAGAGCTCTGGGCTCTTCATGCAACCAGAGACATAAGTACATTAATCATCTTGCCCTAGTGAAATGTGTTATGTGGGTATTTTCACCTACATACTTGTAGGCTACATGTTTGGagtgttacattttttttgtgaccATCTTTTCATAATGAGCTTAAGAGTGTTAAAATAACCTGATTAGTTTGGCATGATTGTTGTCTATCTACTCCATAGGGCCTAGGCCACACTGATGTAAACAGTTGTTTAAAATTGACGTTTTGTTTAATCTACTCGATTTTCTCCTAACCTACCAGCAGTTTTCCCCTCTAGCAGCCTGCCATAATCTTTGGTGTCTATCTTGCCCAGCTCAGAGATTAAAGATTAATCTTTGGTCCAGTCATAGAATTAGCATACTATGATAGACATGAACCTTAAGGTcagccatcttggtcagggagttggacagacaagttgtaaatgcaacaagtactgatattgtatcataatAGCGTTCAGTGTTCCAAGAAAAACATTTAGACATTTACTGGCTGTTTGTGTATTTTAGAGGCTATTCATATAGAAATTGTATTTATAGTGACAGTATTTTGGGTAGACAGTGTAATAATTATCACATGCG

Function

NR:

description
scaffold attachment factor B2-like isoform X2

GO: NA

KEGG:

id description
K25092 SAFB; scaffold attachment factor B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603650.2 False 3950 mRNA 0.48 18 60165608 60180274
XM_021603651.2 True 3935 mRNA 0.48 18 60165608 60180274

Neighbor

gene id symbol gene type direction distance location
malt2 LOC106613687 coding upstream 3674 60133236 ~ 60161934 (+)
LOC110524202 NA coding upstream 196662 59930644 ~ 59968946 (+)
LOC110524200 LOC106613684 coding upstream 235065 59920588 ~ 59930543 (+)
LOC110524201 LOC106613685 coding upstream 245432 59915582 ~ 59920176 (+)
LOC110524198 LOC106613681 coding upstream 261574 59889619 ~ 59904034 (+)
LOC118964531 NA coding downstream 43523 60223797 ~ 60267847 (+)
LOC110524211 tpm4 coding downstream 188117 60368391 ~ 60395175 (+)
LOC110524213 LOC106613698 coding downstream 218716 60398990 ~ 60407448 (+)
hsh2d LOC106613697 coding downstream 227279 60407553 ~ 60411038 (+)
LOC110524215 LOC106613700 coding downstream 246836 60427110 ~ 60432323 (+)
G421826 NA non-coding upstream 28425 60136882 ~ 60137183 (+)
G421825 NA non-coding upstream 28993 60136403 ~ 60136615 (+)
G421814 NA non-coding upstream 52753 60112635 ~ 60112855 (+)
G421811 NA non-coding upstream 55699 60109602 ~ 60109909 (+)
G421831 NA non-coding downstream 2349 60182623 ~ 60184805 (+)
G421840 NA non-coding downstream 6722 60186996 ~ 60187410 (+)
G421843 NA non-coding downstream 13082 60193356 ~ 60193756 (+)
G421844 LOC105030512 non-coding downstream 13949 60194223 ~ 60194784 (+)
G421846 NA non-coding downstream 15785 60196059 ~ 60196347 (+)
G420634 NA other upstream 1221391 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 1748832 58411240 ~ 58418268 (+)
G419452 NA other upstream 2265960 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 2798271 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3207443 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 513983 60694220 ~ 60695905 (+)
G423922 NA other downstream 1541263 61721537 ~ 61722024 (+)
G424079 NA other downstream 1925249 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 2102878 62283054 ~ 62327772 (+)
G425224 NA other downstream 2864816 63045090 ~ 63051530 (+)

Expression


Co-expression Network