LOC110524209 (LOC106613694)


Basic Information

Item Value
gene id LOC110524209
gene name LOC106613694
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60282374 ~ 60289431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603652.2
AGGTTCAGATATCAACACTACGCGCCAGAGATCGCACGGGAAATATTCTAACCGGTGGAAAATTGTCACGGTTTTAtgttacatttttttccccctgctGAGATTGCAGACTTTAACATACATTTCCCCAAAATACGAGTTATTAGGCTGCAAAGAAATGAAAGGGTTGCAAGTGCATTGTCTTTACTTTCTTATGTTAAATGTAGTATTTTATGTGGCGTCTTTGGAAGAGGGTGACTCCATTTCTACACTTGATAATTTCATGGACAACTTCAAGGACTTGATGCGAAACAACGATGCCACCCCTCATGCCTACGCCAAATTCTCCCTCCGGAAGCCTTTGATGCCGGAAGATGACATCTGCTATATCATCCCCGGCAACCCGGAATCTCTCAAAGAATGCACTTTCAATAGCACATCCAAAACCTTCCTGGTGATCCACGGCTGGACAGTGAGCGGCTTGTTTGAGAGCTGGGTGGCCAAGCTGGTTTCGGCGCTGTACAAAAGAGAGCAGGAAGCCAATGTGATCGTGGTGGACTGGCTGTACACAGCCCAGAACCACTATCCAGTAGCTGCCCAGAACACCAAGATGGTGGGACAAGAGATTGCTCGCTTCATTGACTGGCTGGAGGAGGCAACAAACATCCCTCTTGAAAACCTCCATCTCATTGGCTACAGTCTGGGTGCTCATGTTGCAGGATTCGCTGGGAGCCACGCCTCCAATAAAGTGGGCAGAATAACTGGTCTTGACCCAGCTGGTCCAGACTTCGAGGGGGAGCACGCTCACCGCCGCCTGTCCCCAGATGATGCCCACTTTGTGGATGTTCTCCACACGTTCACGCGGGGCTCTCTGGGCTTAAGCATCGGCATCCAGCAGCCTGTAGGCCATGTGGACATCTACCCCAATGGAGGCAGCTACCAGCCAGGCTGCAATCTGCAAAGCCCTCTGGAAACAATATCCAAACTTGGCCTCTTTGCTATCAATGATGTTCCCAGGTGTTCCCACGAGCGCTCCATCCACCTGTTCATCGACTCCCTGGTCAACGAGCAGGAGGCCAGCATGGCGTACCGCTGCGGGAGCAACGATATGTTCGACCGCGGAATGTGCCTCCGCTGCCGCAAGAACCACTGTAACACCGTGGGCTACGATATCAGCAAGGTTCGCAAGACCCGTAGCGTCAAACTGTACACCAAGACCAGGGCCTCCATGCCGTTCAGAGTCTATCACTACCAGGTGAAGATCCACTTCTTCAGCAAGGTGAACAGGTCTGAGATGGAGCCTTCACTGACAGTCTCCCTGATTGGAACCAAAGGAGAGGTTGAAGACCTCAAACTGACACTAAAGGAGAAGATGACATCCAATAAGACCCATTCCTTCCTGCTGGTAGCAGAGAAAGACATTGGTGACCTCCTGATGGTGAAGTTCAAGTGGGAGGAGTCTACTAGCTGGTCTCCCTCGTTCATGCTCAACATGGTGTCTTCCTGGTGGTCAGGTGACTCTGCGAAGTCTGAAGTGGAGGTCCACAAAATACGCATCAGAGTCGGAGAGACGCAAAAAAAGATGGTATTCTGCATTAAAGATCCTCATGCTCTGAGCTTACAACAGGAAGTTACGTTTGTAAAATGCAAAGACGAATGGAGGAAAACTTCAAAAAGAGTGAACCTGGGGAAGCACTGAATGTACGGAGCAACAGACTACTGTCCTCCTTCCTCAGCTCTTAGAGAAATTATTTATACAGCTGTAATTTATTTTGTCTTTCAAACTATACAAAGACATTATCACATTGTGTCCAGAACTAGAACTGTGTgttatttaaaaatgtatgtgaagtATTTTTTTGTAAGCACTGCTTTTGTGGTGCATCAACTacggtgtggtgctgaaagataGTAAATGCCATCATCTTTGCTGATTTTCTGGCAACCCCAAAGAGATGGCTCTTATACAAAGTCTTTGGTGCCTCTGATTGAGAGAGACCCATTGACCAGCTGAGTAGAGGCCTCGAGGTACCTGCAGTTCAAACCCCATGTGTTTCCTTAATTTATGCTTAAAGCATTCACCATTGTCGTCCTCAATACTATGTGATTGTAGGATCGGACTAAGTGTGCCTTAAAATAACTTGTCTtaacctactgtatgtattttttgTTATGGTGTactttaattttattttatttttacctctAGTGAGTTGTTCCTTTTATCTGGTCTTTGAGACAGTAATATTCATGAGGTCTGAAATGTACATTATTCTGAGAACTTTGAATTTAGTCAAGCACTTGAGCAATAATGCAATGGCTGCTAtttttatacagtatattcatttgAAACCAGCAATAGTGAGTCCTTTGCAGCAAAATACGGTACATATCAGTGAGAACCATTATTTTTGTAGTTATTACAATGTTATACAATTATagctttttttttcatttttttttttcaatgattCATATGGAACTATTACCTCTAGCACGTGCTTATGTGACGTATTTTGACTAGCATATCCATGGTTGCTGCTAAACTATGACACATATAATACTCATTTAGCTGTGTATGCCATATAGTTGTGACCAGGTAACTAAACTCAAAGAAGTCAATGAGTGGTTATTGTGAAGTGCGCTGACATCAGCAATAGAAACAGGACAGCCTTCCTCGGTAGACTGTGCACAGTGGACTCTGCATCATAGTTCAAGTTACAGTTAAGAATTGGCTAGTAATAATATCTCATTGTCAGACTATATTTTTTTAACACCACTGAGTAGGCTATTTATAAGTAATATTATACATTTAGAGACTGGTATTGTAATCATTGTGACTTATTTAATTTCTGCCTGTTCCATTGAgcctgtagtggtggtggtggtataaaGCTTTTGCACTGAAAACCAGAGGAAAGGGTTACTAAACCAGTTACTTACTAAGTGCACCATGTGTAAATATCATGTTAGCATGTGATTCTATGGTAAAATATGACTAGATATATTTTTTACCGTCTTAACTTTTTAAATTAtatctgtatactgtatatacctgtaAATATGTGACCATATACATACTTTAATAAATTGGAACTGCTATTTTTGAAG

Function

NR:

description
lipoprotein lipase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603652.2 True 3090 mRNA 0.43 9 60282374 60289431

Neighbor

gene id symbol gene type direction distance location
LOC110524206 ap1m1 coding downstream 148102 60116530 ~ 60134272 (-)
klf2a LOC106613686 coding downstream 300755 59979007 ~ 59981619 (-)
LOC118964630 NA coding downstream 368098 59904845 ~ 59914276 (-)
LOC110524194 LOC106613679 coding downstream 481170 59787744 ~ 59801204 (-)
LOC110524193 LOC106613676 coding downstream 505718 59772761 ~ 59776656 (-)
lpl lpl coding upstream 8773 60298204 ~ 60306640 (-)
LOC110524214 LOC106613699 coding upstream 105593 60395024 ~ 60398862 (-)
LOC118964632 NA coding upstream 124732 60414163 ~ 60426534 (-)
ccl44 LOC106613702 coding upstream 170416 60459847 ~ 60462194 (-)
LOC110524218 LOC106613703 coding upstream 181881 60471312 ~ 60476448 (-)
G422468 NA non-coding downstream 1928 60280128 ~ 60280446 (-)
G422466 NA non-coding downstream 3233 60278932 ~ 60279141 (-)
G422418 NA non-coding downstream 62160 60219892 ~ 60220214 (-)
G422415 NA non-coding downstream 64710 60217371 ~ 60217664 (-)
G422388 NA non-coding downstream 99514 60182624 ~ 60182860 (-)
G422471 NA non-coding upstream 4071 60293502 ~ 60293708 (-)
G422474 NA non-coding upstream 6743 60296174 ~ 60296487 (-)
G422481 NA non-coding upstream 19398 60308829 ~ 60310071 (-)
G423073 NA non-coding upstream 71159 60360590 ~ 60362946 (-)
G423057 tpm4 non-coding upstream 78998 60368429 ~ 60393194 (-)
G422347 NA other downstream 181318 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1144117 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1246075 59026103 ~ 59036299 (-)
G420421 NA other downstream 1868231 58413128 ~ 58414143 (-)
G420193 NA other downstream 2168314 58112387 ~ 58114060 (-)
LOC110524239 LOC106573579 other upstream 769563 61058949 ~ 61081864 (-)
G424474 NA other upstream 1327439 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1360536 61649967 ~ 61651775 (-)
G424502 NA other upstream 1369602 61659033 ~ 61659585 (-)
G424649 NA other upstream 1598767 61888198 ~ 61927422 (-)

Expression


Co-expression Network