lpl (lpl)


Basic Information

Item Value
gene id lpl
gene name lpl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60298204 ~ 60306640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124604.1
CATAAGAAACTCCACTCTTATCACAAATCAGATTTACTTTTAGACCAGAGCAGTGGTCCTACTGACCTATACAATTGGATCTACCACTCCTAAACcaacataaaataacattttcatTCGGGACTTGACGGAGAAACCTCTGGATCAACAATAATATGGGAAAAGAAAATACCTTTTTGGTCACCGTTTGGATAATTCTGGCAAATATCTGTGTATCTTTTTCAAGTACACCAGAACAAACACTTTTTGGTAACAGCAACTCCACTGAATGGCTTGAGGACTACACAGACATTGTATCCAAGTTCTCCCTGAGAACTGCTGAGATACCGGATGATGACTTGTGCTACATCGTTCCCGGCCAGCCCTTAACCATCCCAAAGTGTGAATTCAACCCTGGGTATAAGACGTTCGTGGTCATTCATGGATGGACGGTCACGGGGCTGTTTGAGAGCTGGGTCCCTAAGCTGGTGACAGCGCTGTACAAGAGGGAGCCCAAGGCCAACGTGATTGTGGTGGACTGGCTGACACGGGCGCAGCAGCACTACCTCACCTCCGCTGCCAACACCAAGCTGGTGGGCAAAGACGTGGCCAAGTTTGTTAATTGGCTGCAGAAAACACTCGACTATCCCTGGGAGAAGATACATCTGCTGGGCTACAGTCTGGGTGCTCATGTAGCTGGCATCGCTGGTCTCCTCACCAACCACAAAGTCAGCAGGATCACAGGTTTGGACCCGGCCGGCCCGACCTTTGAGTTTGCTGACGCCCAGAGCACCCTGTCCCCCGACGATGCTCTCTTTGTGGACGTCCTGCACACCAACACCCGGGGCTCCCCAGACCGCAGCATCGGCATCCAGAGACCCGTGGGCCACGTGGACATCTACCCCAACGGAGGAACCTTCCAGCCAGGCTGTGATCTGCAGAACACCATGATGATGATCGCCACCACCGGCATCCGTAATATGGACCAGCTTGTGAAGTGCTCCCATGAGCGCTCCATCCACCTGTTTATCGACTCACTGGTGAACGCAGCAGAGCATCAGACCATGGCCTACCGCTGCAGCTCCAAGGAGGCCTTCATGAAGGGCATGTGCCTCAACTGCCGTAAGAACCGCTGTAACAAGGTGGGCTACGGTGTCAACAAGGTCCGCCTGCCCCGGAACACCAAGATGTACCTCAAGACCCGTGAGATGATGCCCTTCAAACTTTTCCATTACCAAGTGAAGGTGCATTTCTTCAGCAGTGAGAAACTGGCCTACACTGAGCAGCCCATGAAAATCTCTCTGTACGGAACCCATGATGAGAAGATTGACATACCTTACACCATGCCCTTCCTGAACACCAACAGCACTGTGTCATTCCTGCTGACCACTGACGTGGACGTTGGGGAGCTGCTTATGGTCAAGCTGCGCTGGGAGAAAGATGCCTATTTCAGCTGGTCTGACATTTGGGGAAACAAAAACTTCCACATCCGCAAAATGCGTGTCAAGGCCGGGGAGACTCAATCCAGGGTGATCTTCAGCGCTAAAGATGGAGAGTATGCCTACCTCATCAGAGGAAAAGACGACGTAGTCTTTGTCAAATCAAAAGAGGACAACATGAGCCGGAAAGAGAAAACGATGCACAGACTCAAGATGCAGGGAAGCCACTTCAAGAATAACATTGCATGAAGCAACACTTGAGTAGAGTGCACACTGAACCACACAGCCAAAGCTTGATGGAGCCTGGGAGAATACACTGGAGAGGAGATAGGGGATGTTAGTCTCTGACCTGTGCTGTATGTTCTGCCTCCCAACCTGTGTCATCTCATCTCCACCCGCAATCACTTCATCCCACTGTGCTGGGTGTCGGCTAACGTGCTTTTTCTTCTATTAACCTTCATCATGGAGAGTATTACAATtgctttttttttaatgattttgaCTTGGTCTTACGTTGCTACATTATCTTTTTAATCCTTTCATCTCAACTGTGTTTATGTATAC

Function

symbol description
lpl Predicted to enable apolipoprotein binding activity; lipoprotein lipase activity; and phospholipase activity. Acts upstream of or within definitive hemopoiesis and response to (R)-carnitine. Predicted to be located in extracellular region and plasma membrane. Predicted to be part of chylomicron and very-low-density lipoprotein particle. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; head; immature eye; midbrain; and ovary. Human ortholog(s) of this gene implicated in Alzheimer's disease; artery disease (multiple); familial hyperlipidemia (multiple); muscular disease; and type 2 diabetes mellitus. Orthologous to human LPL (lipoprotein lipase).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K01059 LPL; lipoprotein lipase

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124604.1 True 1982 mRNA 0.50 10 60298204 60306640

Neighbor

gene id symbol gene type direction distance location
LOC110524209 LOC106613694 coding downstream 8773 60282374 ~ 60289431 (-)
LOC110524206 ap1m1 coding downstream 163932 60116530 ~ 60134272 (-)
klf2a LOC106613686 coding downstream 316585 59979007 ~ 59981619 (-)
LOC118964630 NA coding downstream 383928 59904845 ~ 59914276 (-)
LOC110524194 LOC106613679 coding downstream 497000 59787744 ~ 59801204 (-)
LOC110524214 LOC106613699 coding upstream 88384 60395024 ~ 60398862 (-)
LOC118964632 NA coding upstream 107523 60414163 ~ 60426534 (-)
ccl44 LOC106613702 coding upstream 153207 60459847 ~ 60462194 (-)
LOC110524218 LOC106613703 coding upstream 164672 60471312 ~ 60476448 (-)
LOC110524219 LOC106613704 coding upstream 203039 60509679 ~ 60513480 (-)
G422474 NA non-coding downstream 1717 60296174 ~ 60296487 (-)
G422471 NA non-coding downstream 4496 60293502 ~ 60293708 (-)
G422468 NA non-coding downstream 17758 60280128 ~ 60280446 (-)
G422466 NA non-coding downstream 19063 60278932 ~ 60279141 (-)
G422418 NA non-coding downstream 77990 60219892 ~ 60220214 (-)
G422481 NA non-coding upstream 2189 60308829 ~ 60310071 (-)
G423073 NA non-coding upstream 53950 60360590 ~ 60362946 (-)
G423057 tpm4 non-coding upstream 61789 60368429 ~ 60393194 (-)
G423095 NA non-coding upstream 115244 60421884 ~ 60422186 (-)
G422347 NA other downstream 197148 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1159947 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1261905 59026103 ~ 59036299 (-)
G420421 NA other downstream 1884061 58413128 ~ 58414143 (-)
G420193 NA other downstream 2184144 58112387 ~ 58114060 (-)
LOC110524239 LOC106573579 other upstream 752354 61058949 ~ 61081864 (-)
G424474 NA other upstream 1310230 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1343327 61649967 ~ 61651775 (-)
G424502 NA other upstream 1352393 61659033 ~ 61659585 (-)
G424649 NA other upstream 1581558 61888198 ~ 61927422 (-)

Expression


Co-expression Network