LOC110524211 (tpm4)


Basic Information

Item Value
gene id LOC110524211
gene name tpm4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60368391 ~ 60395175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977996.1
TGACGGCAGCCCTAGGCTTGAGTCTGCATCCCTCTGTGCTGCGCgtgctccctcgctctctctcactcccttgctctccctcgctctctctcgtttctacctctgtttgtctctctatccctctgactcttgTGGACGCAGGTTCCAGTGGAGTTTGCTCCAGTACTGAACAGGACAGACACTGTCTCAAACTACAGGGGTGACATCTCAACTTTCTCAGCTGCATTTCTCATCTCAGTGAGCACAATCTAACCAAGCACCATGGAGGCCATCAAGAAGAAGATGCAGATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGCGCAGAGCAGGCCGAGACCGATAAGAAGGCAGCGGAGGACAAGTGCAAACAGCTGGAAGACGAGCTGCTGAGCCTGCAGAAGAATTTGAAGGGGACTGAAGATGAGTTGGACAAATACTCTGAGGCCCTCAAAGATGCCCAGGAGAAACTGGAACAGTCTGAGAAGACCGCCGCAGACgCGGAGGGTGATGTGGCGGGTCTGAACCGCAGGATCCAGCTAGTGGAGGAGGAGTTGGACCGggcccaggagaggctgtctaccGCGCTGCAGAAACTGGAGGAGGCAGAGAAGGCCGCAGATGAGAGCGAGAGAGGAATGAAGGTGATAGAGAACAGAGCCTCTAAGGACgaggagaagatggagatccAGGAGATGCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACCGCAAATACGAGGAGGTGGCCCGTAAGCTGGTGATCTTggagggagagctggagagagctgaggagagggCAGAGGTCTCAGAACTTAAATGCAGTGACCTGGAGGAGGAGTTGAAAAATGTGACCAACAACCTCAAGTCCCTAGAAGCCTCGTCTGAGAAGTACTCAGAAAAAGAGGACAAGTATGAGGAGGAGATCAAGGTTCTTAGTGACAAGCTGAAGGAGGCTGAGACTCGTGCAGAGTTTGCAGAGAGGACTGTGGCCAAACTCGAAAAGTCCATCGACGACCTGGAAGAAAAATTAGCAGGTGCTAAAGAAGAGAACTTGGGGATGCATCAAGTCCTGGACCAAACACTGCAAGAGCTCAACAGCTTATAAACATGATGAAGAAGATGGAAAGGATAAAAGTCTTGCAACATTCCATAAATATTCAATTTCGTTCCACATTTCCAGCTGTAAAGTCTTATTCCCAGGGAAAGGGGATTAACTTAAATACTTGTACCCTTCATTTTCTCTTCTCTTTTTAAGTcacaactttctctctctctctttaagagAAATGCATTCCAAATCACCAGCTTCCTCGAATCCCATTTCTTATGTTTACAGCATTTTGTTTCATGGAACTTTTGAGATTATAGACCAGCAATAAAATAAAATGGATTATGACCATATTTACAAACAGTCTTTCAGGCCAATTATTCAGGCCAATTAGTAAAGAATAGAAAAAACAACAATTCATATCTGAAGTGTGCACTCCAAGAGCATGTTTTTGAAATGGGTCTTGTGACATGGTTTTCATTTTACGTATGATTCATGAGCTCCACCTCGAGGTCTTATGTGAACAGTTTACAGGAATCAGCTTTACTGTCCATGCACCCATCGACATGGTCATATTTAATGCATTCACAATGTGTGTGACCATATTCACAGGTTGGACTGTGCCTTTTCAGAATGAGCCAATATTCTACCTTTGGTGTGCTTGCGTGTGTTAACATGGTCGTTGAGACGAAAGGATGACTCAAGGAAAGTATGGTGAACATGTCTGTGGTGCTACTTGTGGTGGTAAAATACTATGACCGACAGTCAGGTGGAGGGTTTGCCAAAGCCAAACTCAAAATGTTTTTTGATGTGAAAAGAGCCTCATGCAAATCCTTTAAAGAACATCATCCCATCCTCTGACTTAACCTATAATCTGTATGGTTTTAAAGTGCCACCATATGCTGACATGCAGCTTTATAGCACCTCCTTTCCACTATCCCAGCTCTACATTTGACTGCCTGAGCCTTGGATGTAAAATCACATTCCTGGTATTAAATGTGGTGGTAGCATATGCAGTAAACGTTATGCCAAATAAGCACCACTGGAGCCTCAATCAAGGTAATAAAACATGGATACTTATTGTATATAGTAGAATAATGTTAGTTATTGAGAAGATGTATTGCTCCAGTTTTTCACCACTTTCCGGCAGGGGAACTCTCGAAACCAAAGAATACAAATACCAGAGAAGATGAACCCTCAAATGTTTTTATTGTTGTCTGTGAAGGTGATCATGGCTTCTCATCCTTGGCCCGTGAAAAAAGCTTCTCATTTGACTTGAGTCTGTGTTGAAATGTTTCATTCACCTTTCCCTCTTTCAAtctaatacattttta
>XM_036977995.1
ACGGCAGCCCTAGGCTTGAGTCTGCATCCCTCTGTGCTGCGCgtgctccctcgctctctctcactcccttgctctccctcgctctctctcgtttctacctctgtttgtctctctatccctctgactcttgTGGACGCAGGTTCCAGTGGAGTTTGCTCCAGTACTGAACAGGACAGACACTGTCTCAAACTACAGGGGTGACATCTCAACTTTCTCAGCTGCATTTCTCATCTCAGTGAGCACAATCTAACCAAGCACCATGGAGGCCATCAAGAAGAAGATGCAGATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGCGCAGAGCAGGCCGAGACCGATAAGAAGGCAGCGGAGGACAAGTGCAAACAGCTGGAAGACGAGCTGCTGAGCCTGCAGAAGAATTTGAAGGGGACTGAAGATGAGTTGGACAAATACTCTGAGGCCCTCAAAGATGCCCAGGAGAAACTGGAACAGTCTGAGAAGACCGCCGCAGACgCGGAGGGTGATGTGGCGGGTCTGAACCGCAGGATCCAGCTAGTGGAGGAGGAGTTGGACCGggcccaggagaggctgtctaccGCGCTGCAGAAACTGGAGGAGGCAGAGAAGGCCGCAGATGAGAGCGAGAGAGGAATGAAGGTGATAGAGAACAGAGCCTCTAAGGACgaggagaagatggagatccAGGAGATGCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACCGCAAATACGAGGAGGTGGCCCGTAAGCTGGTGATCTTggagggagagctggagagagctgaggagagggCAGAGGTCTCAGAACTTAAATGCAGTGACCTGGAGGAGGAGTTGAAAAATGTGACCAACAACCTCAAGTCCCTAGAAGCCTCGTCTGAGAAGTACTCAGAAAAAGAGGACAAGTATGAGGAGGAGATCAAGGTTCTTAGTGACAAGCTGAAGGAGGCTGAGACTCGTGCAGAGTTTGCAGAGAGGACTGTGGCCAAACTCGAAAAGTCCATCGACGACCTGGAAGATGAACTGTACGCTCAGAAGCTGAAGTACAAGGCAATCAGCGAGGAGCTGGACCATGCCCTCAATGACATGACCTCCTTGTAgatgtctcttcctgtctgtctcatgCTGCCTCTAGGGTGTCTGTCCTCTCACCCTTTcccactgtaggcctactgtgtCCCAGGGTTCGCTTCCAGAAACACAGGCCGTTCTCTGTGCCTTCTGTCCATCTCACTGTGCAAATGAAACTCATTAAAAGCCTAATCTTTCCTACGTCTAAA
>XM_036977998.1
GACCTCATCTGAATCACACTTCTCTGGGTTGGAGGAGTGCACATTAACTTTCCTCATCACTCCTGCCATTTTATCTGGCTTTCAAAACTGGAACGCTGCGCTTCGCTAATGCGTTCATCCATATTACATTCCAAATTAGATATTTTAATACTTTTGTGAAGCCATTCTTAGGCTGAAGCTGAACTAAAGAAACATTTCGGGAAACACCTGGATAGCCTACTGCTTTGGTTTATACAGCTTACATTTTTCCACTTGAGATTTCTATTCGGCTCTTTCGGGTCCATTCCAAAGACTTTGAATACTATTTGTAGCCTATATCCTGTTTCGAATAGACTAAAGCAGCTTTTACcacaatattttatttttctatACCAAAAgttttatttttaaccaaatagtACGACAATGGCAGGTTTGAATTCTTTGGAAGCTGTGAAGAGAAAGATCCAGTGTTTGCAACAGCAAGCCGACGACGCAGAAGACCGGACCCAGGTTTTACAGCGAGAACTGGATGGGGAACGAGAACTTCGGGAGAAAgCGGAGGGTGATGTGGCGGGTCTGAACCGCAGGATCCAGCTAGTGGAGGAGGAGTTGGACCGggcccaggagaggctgtctaccGCGCTGCAGAAACTGGAGGAGGCAGAGAAGGCCGCAGATGAGAGCGAGAGAGGAATGAAGGTGATAGAGAACAGAGCCTCTAAGGACgaggagaagatggagatccAGGAGATGCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACCGCAAATACGAGGAGGTGGCCCGTAAGCTGGTGATCTTggagggagagctggagagagctgaggagagggCAGAGGTCTCAGAACTTAAATGCAGTGACCTGGAGGAGGAGTTGAAAAATGTGACCAACAACCTCAAGTCCCTAGAAGCCTCGTCTGAGAAGTACTCAGAAAAAGAGGACAAGTATGAGGAGGAGATCAAGGTTCTTAGTGACAAGCTGAAGGAGGCTGAGACTCGTGCAGAGTTTGCAGAGAGGACTGTGGCCAAACTCGAAAAGTCCATCGACGACCTGGAAGAAAAATTAGCAGGTGCTAAAGAAGAGAACTTGGGGATGCATCAAGTCCTGGACCAAACACTGCAAGAGCTCAACAGCTTATAAACATGATGAAGAAGATGGAAAGGATAAAAGTCTTGCAACATTCCATAAATATTCAATTTCGTTCCACATTTCCAGCTGTAAAGTCTTATTCCCAGGGAAAGGGGATTAACTTAAATACTTGTACCCTTCATTTTCTCTTCTCTTTTTAAGTcacaactttctctctctctctttaagagAAATGCATTCCAAATCACCAGCTTCCTCGAATCCCATTTCTTATGTTTACAGCATTTTGTTTCATGGAACTTTTGAGATTATAGACCAGCAATAAAATAAAATGGATTATGACCATATTTACAAACAGTCTTTCAGGCCAATTATTCAGGCCAATTAGTAAAGAATAGAAAAAACAACAATTCATATCTGAAGTGTGCACTCCAAGAGCATGTTTTTGAAATGGGTCTTGTGACATGGTTTTCATTTTACGTATGATTCATGAGCTCCACCTCGAGGTCTTATGTGAACAGTTTACAGGAATCAGCTTTACTGTCCATGCACCCATCGACATGGTCATATTTAATGCATTCACAATGTGTGTGACCATATTCACAGGTTGGACTGTGCCTTTTCAGAATGAGCCAATATTCTACCTTTGGTGTGCTTGCGTGTGTTAACATGGTCGTTGAGACGAAAGGATGACTCAAGGAAAGTATGGTGAACATGTCTGTGGTGCTACTTGTGGTGGTAAAATACTATGACCGACAGTCAGGTGGAGGGTTTGCCAAAGCCAAACTCAAAATGTTTTTTGATGTGAAAAGAGCCTCATGCAAATCCTTTAAAGAACATCATCCCATCCTCTGACTTAACCTATAATCTGTATGGTTTTAAAGTGCCACCATATGCTGACATGCAGCTTTATAGCACCTCCTTTCCACTATCCCAGCTCTACATTTGACTGCCTGAGCCTTGGATGTAAAATCACATTCCTGGTATTAAATGTGGTGGTAGCATATGCAGTAAACGTTATGCCAAATAAGCACCACTGGAGCCTCAATCAAGGTAATAAAACATGGATACTTATTGTATATAGTAGAATAATGTTAGTTATTGAGAAGATGTATTGCTCCAGTTTTTCACCACTTTCCGGCAGGGGAACTCTCGAAACCAAAGAATACAAATACCAGAGAAGATGAACCCTCAAATGTTTTTATTGTTGTCTGTGAAGGTGATCATGGCTTCTCATCCTTGGCCCGTGAAAAAAGCTTCTCATTTGACTTGAGTCTGTGTTGAAATGTTTCATTCACCTTTCCCTCTTTCAAtctaatacatttttacaaaaaaaaa
>XM_036977997.1
ACCTCATCTGAATCACACTTCTCTGGGTTGGAGGAGTGCACATTAACTTTCCTCATCACTCCTGCCATTTTATCTGGCTTTCAAAACTGGAACGCTGCGCTTCGCTAATGCGTTCATCCATATTACATTCCAAATTAGATATTTTAATACTTTTGTGAAGCCATTCTTAGGCTGAAGCTGAACTAAAGAAACATTTCGGGAAACACCTGGATAGCCTACTGCTTTGGTTTATACAGCTTACATTTTTCCACTTGAGATTTCTATTCGGCTCTTTCGGGTCCATTCCAAAGACTTTGAATACTATTTGTAGCCTATATCCTGTTTCGAATAGACTAAAGCAGCTTTTACcacaatattttatttttctatACCAAAAgttttatttttaaccaaatagtACGACAATGGCAGGTTTGAATTCTTTGGAAGCTGTGAAGAGAAAGATCCAGTGTTTGCAACAGCAAGCCGACGACGCAGAAGACCGGACCCAGGTTTTACAGCGAGAACTGGATGGGGAACGAGAACTTCGGGAGAAAgCGGAGGGTGATGTGGCGGGTCTGAACCGCAGGATCCAGCTAGTGGAGGAGGAGTTGGACCGggcccaggagaggctgtctaccGCGCTGCAGAAACTGGAGGAGGCAGAGAAGGCCGCAGATGAGAGCGAGAGAGGAATGAAGGTGATAGAGAACAGAGCCTCTAAGGACgaggagaagatggagatccAGGAGATGCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACCGCAAATACGAGGAGGTGGCCCGTAAGCTGGTGATCTTggagggagagctggagagagctgaggagagggCAGAGGTCTCAGAACTTAAATGCAGTGACCTGGAGGAGGAGTTGAAAAATGTGACCAACAACCTCAAGTCCCTAGAAGCCTCGTCTGAGAAGTACTCAGAAAAAGAGGACAAGTATGAGGAGGAGATCAAGGTTCTTAGTGACAAGCTGAAGGAGGCTGAGACTCGTGCAGAGTTTGCAGAGAGGACTGTGGCCAAACTCGAAAAGTCCATCGACGACCTGGAAGATGAACTGTACGCTCAGAAGCTGAAGTACAAGGCAATCAGCGAGGAGCTGGACCATGCCCTCAATGACATGACCTCCTTGTAgatgtctcttcctgtctgtctcatgCTGCCTCTAGGGTGTCTGTCCTCTCACCCTTTcccactgtaggcctactgtgtCCCAGGGTTCGCTTCCAGAAACACAGGCCGTTCTCTGTGCCTTCTGTCCATCTCACTGTGCAAATGAAACTCATTAAAAGCCTAATCTTTCCTACGTCTAAA

Function

symbol description
tpm4 Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Involved in osteoblast differentiation. Located in stress fiber.

NR:

description
PREDICTED: tropomyosin alpha-4 chain isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977996.1 False 2393 mRNA 0.45 9 60368391 60395165
XM_036977995.1 False 1293 mRNA 0.53 9 60368393 60393191
XM_036977998.1 False 2439 mRNA 0.42 8 60376589 60395175
XM_036977997.1 True 1330 mRNA 0.48 8 60376590 60393191

Neighbor

gene id symbol gene type direction distance location
LOC118964531 NA coding upstream 100544 60223797 ~ 60267847 (+)
LOC110524208 LOC106613692 coding upstream 188117 60165608 ~ 60180274 (+)
malt2 LOC106613687 coding upstream 206457 60133236 ~ 60161934 (+)
LOC110524202 NA coding upstream 399445 59930644 ~ 59968946 (+)
LOC110524200 LOC106613684 coding upstream 437848 59920588 ~ 59930543 (+)
LOC110524213 LOC106613698 coding downstream 3815 60398990 ~ 60407448 (+)
hsh2d LOC106613697 coding downstream 12378 60407553 ~ 60411038 (+)
LOC110524215 LOC106613700 coding downstream 31935 60427110 ~ 60432323 (+)
LOC110524216 LOC106613701 coding downstream 40588 60435763 ~ 60452642 (+)
LOC110522875 NA coding downstream 84993 60480168 ~ 60484430 (+)
G422500 NA non-coding upstream 45472 60322657 ~ 60322919 (+)
G421867 NA non-coding upstream 69825 60297185 ~ 60298566 (+)
G421862 NA non-coding upstream 157636 60210506 ~ 60210755 (+)
G421861 NA non-coding upstream 158178 60209935 ~ 60210213 (+)
G421846 NA non-coding upstream 172044 60196059 ~ 60196347 (+)
G422561 NA non-coding downstream 26256 60421431 ~ 60421644 (+)
G422562 NA non-coding downstream 26981 60422156 ~ 60422600 (+)
G422563 NA non-coding downstream 28375 60423550 ~ 60423839 (+)
G422566 NA non-coding downstream 38036 60433211 ~ 60433863 (+)
G422570 NA non-coding downstream 49137 60444312 ~ 60444602 (+)
G420634 NA other upstream 1424174 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 1951615 58411240 ~ 58418268 (+)
G419452 NA other upstream 2468743 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3001054 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3410226 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 299082 60694220 ~ 60695905 (+)
G423922 NA other downstream 1326362 61721537 ~ 61722024 (+)
G424079 NA other downstream 1710348 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1887977 62283054 ~ 62327772 (+)
G425224 NA other downstream 2649915 63045090 ~ 63051530 (+)

Expression


Co-expression Network