Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524214 |
| gene name | LOC106613699 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 60395024 ~ 60398862 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| 40S ribosomal protein S27-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021603661.2 | False | 934 | mRNA | 0.41 | 4 | 60395024 | 60398861 |
| XM_021603660.2 | False | 489 | mRNA | 0.47 | 3 | 60395594 | 60398862 |
| TU479358 | True | 633 | lncRNA | 0.44 | 4 | 60395269 | 60398805 |
60,393,000
60,394,000
60,395,000
60,396,000
60,397,000
60,398,000
60,399,000
60,399,000
60,400,000
60,401,000
60,402,000
60,403,000
60,404,000
60,405,000
NC_048569.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| lpl | lpl | coding | downstream | 88384 | 60298204 ~ 60306640 (-) |
| LOC110524209 | LOC106613694 | coding | downstream | 105593 | 60282374 ~ 60289431 (-) |
| LOC110524206 | ap1m1 | coding | downstream | 260752 | 60116530 ~ 60134272 (-) |
| klf2a | LOC106613686 | coding | downstream | 413405 | 59979007 ~ 59981619 (-) |
| LOC118964630 | NA | coding | downstream | 480748 | 59904845 ~ 59914276 (-) |
| LOC118964632 | NA | coding | upstream | 15301 | 60414163 ~ 60426534 (-) |
| ccl44 | LOC106613702 | coding | upstream | 60985 | 60459847 ~ 60462194 (-) |
| LOC110524218 | LOC106613703 | coding | upstream | 72450 | 60471312 ~ 60476448 (-) |
| LOC110524219 | LOC106613704 | coding | upstream | 110817 | 60509679 ~ 60513480 (-) |
| LOC110524222 | LOC106613707 | coding | upstream | 206346 | 60605208 ~ 60626475 (-) |
| G423057 | tpm4 | non-coding | downstream | 1830 | 60368429 ~ 60393194 (-) |
| G423073 | NA | non-coding | downstream | 32078 | 60360590 ~ 60362946 (-) |
| G422481 | NA | non-coding | downstream | 84953 | 60308829 ~ 60310071 (-) |
| G422474 | NA | non-coding | downstream | 98537 | 60296174 ~ 60296487 (-) |
| G422471 | NA | non-coding | downstream | 101316 | 60293502 ~ 60293708 (-) |
| G423095 | NA | non-coding | upstream | 23022 | 60421884 ~ 60422186 (-) |
| G423098 | NA | non-coding | upstream | 26013 | 60424875 ~ 60425198 (-) |
| G423099 | NA | non-coding | upstream | 26714 | 60425576 ~ 60425946 (-) |
| G423100 | NA | non-coding | upstream | 27159 | 60426021 ~ 60426387 (-) |
| G423090 | NA | non-coding | upstream | 34478 | 60433340 ~ 60433586 (-) |
| G422347 | NA | other | downstream | 293968 | 60100765 ~ 60101056 (-) |
| lsg1 | lsg1 | other | downstream | 1256767 | 59131152 ~ 59138429 (-) |
| G420982 | LOC106613655 | other | downstream | 1358725 | 59026103 ~ 59036299 (-) |
| G420421 | NA | other | downstream | 1980881 | 58413128 ~ 58414143 (-) |
| G420193 | NA | other | downstream | 2280964 | 58112387 ~ 58114060 (-) |
| LOC110524239 | LOC106573579 | other | upstream | 660132 | 61058949 ~ 61081864 (-) |
| G424474 | NA | other | upstream | 1218008 | 61616870 ~ 61617244 (-) |
| G424499 | LOC106613729 | other | upstream | 1251105 | 61649967 ~ 61651775 (-) |
| G424502 | NA | other | upstream | 1260171 | 61659033 ~ 61659585 (-) |
| G424649 | NA | other | upstream | 1489336 | 61888198 ~ 61927422 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
