LOC110524213 (LOC106613698)


Basic Information

Item Value
gene id LOC110524213
gene name LOC106613698
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60398990 ~ 60407448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603659.2
TCCAAATATTTTTTTCAACTAACCATATCTCTTTACACAGCTGCCGGGCGGGATTTCCGCAATAGCTAATAACATGGCGAAGACTTACGATTACTTGTTCAAATTACTGTTAATCGGCGATTCTGGCGTCGGAAAGACTTGTGTGTTGTTCAGATTTTCAGAAGATGCGTTTAACTCAACGTTTATCTCGACAATAGGTATTGATTTCAAAATTAGAACAATAGAACTAGACGGGAAGAAGATCAAGCTACAGATATGGGACACAGCTGGCCAGGAGCGGTTTCGAACAATCACAACGGCATATTACAGAGGAGCCATGGGCATCATGTTAGTCTTCGACATCACCAACGAGAAGTCATTTGAAAACATCAAGAACTGGATAAGGAATATAGAGGAGCATGCCTCTGCAGATGTGGAGAAGATGGTGCTGGGCAACAAGTGTGACGTCAATGACAAGCGACAGGTGTCCAAAGACAGAGGGGAAAAGTTAGCGTTGGAGTACGGTATTAAGTTTATGGAGACCAGTGCAAAGGCCAACATCAACGTGGAGAATGCATTTATGACCCTTGCCAGAGACATCAAGGCGAAAATGGACAAGAAactgGAGGGCAACAGTCCTCAGGGCAGCAGTCAGGGGGTGAAGATCACAGAGCAGCCCAAGAAGAGCAGTTTCTTCCGCTGCGCCCTCCTGTGAGGACCACGGCCTTCTCATTGTCCACAGCTGGACAGAACTGGACTGAGCTTGCTCAGAGCTCTCCTCTCTTTCGCCCTGTTCTCATCCCTTTCTCATTACCCATATCCCAGGCCTCTTTGGGTTTTGAGCTTTTTTTCTGATTCACCATGTGTCCCCCAGTTTAAAAATGGATGTATTCATTGGTCAGGTGGATCAATCAGGGTTGTTAGATGGAGATCTCTATACCGGGCACTCCTCATGCTCTTATATCGTTTCTCATAATTACACTTAGGcttctgctccccctctcctctctttgtcttATGCAACTGGTATTGTTACAGATACTTCATGTTGCTATGTGGTTGCACTGCTGCCAAAGTTGATCCTtagtgagtttttttttttcttctcaacaTGAATTAACCTTATCCTTAAAAGCAGTGGCTTATTTCCATGTTAAGACTAGTTAACCATCATATATACATCGTGACGTCTTCTGTCAGAGAGTTGCCTTCTGTGTCATCTAGCTACTACTATGGAGATCTATGCGTCCCTGTTTTTTCCTTTCTCAAATGATAGTGATTCTCTCTATTCTACCTTGACATTACTCATTTACCATCCAAGAAAGACACTTATTTTCTTAAGATAATACCTAGAAAAATTCTGAAGTCTTACCATGTTAATAGTGAAGATGTGTGAGGTGAGGACAGTGGGAAGGTAGGCCCCTAAATGGCAGGCAATCCAAGAAATAAGATGAGTAGGTGGCCAGTACGTTGTAATAAACTTTAGGGAACTGTTAACAGAAAATATACATATTGGAGCAGATCGGCATTGTACTTGAGGACGCACAACTGCAACGCATTTTGACGCTGTCTGTAGAGAAGTCAAAACGCGTTGCAGTTGCGCGTCCTCATGTACATTGCCGATCTGCtccaatatgtatatatttctGTTAACAGTTCACTAAAATGTATTGCAACGTACTGGCTGCCTaatcatgatttttttttttgtttttcttcaaTAGTGGACATTCCATCTTAGACAtacctaaaaaataaaataaaaagacctGTGTTCATCATTTTACATGTACTCTATCGTTATGCAGTTCCAATTTGTTTCCTGCGCAAGGTTTATCAACCATATTTGAGTGGTAAAACAATTCTGTGCCGATATCTGCACATTTTGATTGCACTTTAGAAATGAAATTGGCTTCACTGCTTAACATTTGCAAAAGCAGTCTTAAAGTCTTATTCTGTTAGTTCTAAAGAATACTGACATATTCCTATACAAGCTATCACATTCCGGAACTTCCAGTGGCTGTCAGTTGAAATCTGTTCCACAGTAACATCAGTCTAGTTGGAGCACAATTCATTTCCTAACAATTGAGTTGCATAAATTGCCCACAACTTTGGTTTTGGCATTCGAAATGTGTTTTAAtattaaaccactccacaaaatgtTTTCTTTGCCCCAATTATGAATATTGTGTGTGATGTGGAGACCACTGAAACGGAGAGAATCTTTTGGGTGGTAATAATCACTTTGTCATGGATTATAATTATTTTGTAAAGTCATGTCTTAGGCAACCTTTTCAAATGCCAACCTCAACCTATTCCTTATTTGTTTACTGGTTGTTAAATTGTGATACTGTAATACCATTCGGGTTTAGTTTTGTGTGGCCTTTGTGACTTTCTAAGCCTGTTTTAATGCTGCTGTTGTCAGTATTTGTGGCAGAAAATTAGTGACAATGGTCTGCCTTGTAGTTGTTTTGTAGGCCTATAGTCCATTCCAACTAAAGTACATGTTATGGTTATAAGAACTAAATTGAGTAATGTCAACCTACTGTATTGAGAATATTTGAAATACAATATGCAATGACAGTCCATTTCACTAGAGAACCACTCCTGCAGCTTATTTTTAGTCGAGGATAGTAGTTATATGTTTTCCTAATACTTGCTGCTTTGAAACTGAAGAGACCCACATTTTGGTGTTGATAATTACTATTAATGTGCCAGTATTAAGACAATCTAATTCTGGGTGTTTTGGGTTTGATTTAATGTTGCAGTTTTACATTGAATGCATTGGCATCAGTACTTTATCTAAGCACTAGGGGGCAATTTAGTGACATGGCAATGGACTAAAATGTCACAAGCAACGAGTCAAGAGGACATGTAGTCAGTATTTTCAGTGAAACAACATCCAAATATGAAAGTGCCCTTGTAGAAACCCTTGCCAGATTTGAAATATTCTTCCAGTCCCTATCCTCAAGACTTAATCATAGTCTCAGTGATTTGTAGTCCGTTATAGGGTGACAATGTTAAATGGATGCCTGGAGGACAGTAGCTTTGTTTATTTGGAGTTTGCGTTTCGGTTTCGTTCTCCTTCCTTGCTTGCCCTTCCCTCTGAATTTGCCACTGTCCATGACAGCGTGTCTTATTTTCACCTAATACTTGATATCATGGTCTTTGCAACTATGCATCATGAGGCTGTAGGTCCTCTTGAGGGTTTGCACATTTGACTTGAAGAGCTTTTATTTGATATTAGACATGTGCAAAGGATCATTATTGCATTGCTTTCTGTTCTCTTTATACTTTGTCACTCCCATCATTCCCATTCAATCCGTCTTAATGTGGAACTTGCATTCCATTTGTCAACACAAACATTTCTAGGAAATTGAGCACATATTAAATCACAGCAAAAGGAAACGACTTCCCCCTGATTTTGCAGATGAGATTTTTATGTCCTCTCTTGTGTAGAACATCACGAGTGGCACAGTCAGTTTGCTGAACCGCTGTGTATGTTCAGGACCTTGTATAGGTCTGGCAAATGTTTATTCAGAATAGCGATTATGACGGTTTCGTTTCCTTTTGGTGGCACTATTTGTACATATTTTTCAGTTCATAAATCAGTCCAGCATTCCATGTTCAAGACAATTTGGATTTCATAGATACCTATGGTAAATGAGGGGGAAATGGCATTTAGAAaacaattgtaaataagaaagaTCTAAAAATTATTGTACTGTACTTTCATACATATTACTGAATTGATCTACACCTTTTGTAGATGTGTACTTTTGATGATTTATTAAAATGATTATTTTAAAA

Function

NR:

description
ras-related protein Rab-8A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07901 RAB8A, MEL; Ras-related protein Rab-8A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603659.2 True 3789 mRNA 0.39 8 60398990 60407448

Neighbor

gene id symbol gene type direction distance location
LOC110524211 tpm4 coding upstream 3815 60368391 ~ 60395175 (+)
LOC118964531 NA coding upstream 131143 60223797 ~ 60267847 (+)
LOC110524208 LOC106613692 coding upstream 218716 60165608 ~ 60180274 (+)
malt2 LOC106613687 coding upstream 237056 60133236 ~ 60161934 (+)
LOC110524202 NA coding upstream 430044 59930644 ~ 59968946 (+)
hsh2d LOC106613697 coding downstream 105 60407553 ~ 60411038 (+)
LOC110524215 LOC106613700 coding downstream 19662 60427110 ~ 60432323 (+)
LOC110524216 LOC106613701 coding downstream 28315 60435763 ~ 60452642 (+)
LOC110522875 NA coding downstream 72720 60480168 ~ 60484430 (+)
ctns LOC106613706 coding downstream 127085 60534533 ~ 60543487 (+)
G422500 NA non-coding upstream 76071 60322657 ~ 60322919 (+)
G421867 NA non-coding upstream 100424 60297185 ~ 60298566 (+)
G421862 NA non-coding upstream 188235 60210506 ~ 60210755 (+)
G421861 NA non-coding upstream 188777 60209935 ~ 60210213 (+)
G421846 NA non-coding upstream 202643 60196059 ~ 60196347 (+)
G422561 NA non-coding downstream 13983 60421431 ~ 60421644 (+)
G422562 NA non-coding downstream 14708 60422156 ~ 60422600 (+)
G422563 NA non-coding downstream 16102 60423550 ~ 60423839 (+)
G422566 NA non-coding downstream 25763 60433211 ~ 60433863 (+)
G422570 NA non-coding downstream 36864 60444312 ~ 60444602 (+)
G420634 NA other upstream 1454773 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 1982214 58411240 ~ 58418268 (+)
G419452 NA other upstream 2499342 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3031653 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3440825 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 286809 60694220 ~ 60695905 (+)
G423922 NA other downstream 1314089 61721537 ~ 61722024 (+)
G424079 NA other downstream 1698075 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1875704 62283054 ~ 62327772 (+)
G425224 NA other downstream 2637642 63045090 ~ 63051530 (+)

Expression


Co-expression Network