hsh2d (LOC106613697)


Basic Information

Item Value
gene id hsh2d
gene name LOC106613697
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60407553 ~ 60411038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603653.2
AATGTCAGATATTTATATCCCAAGATCGACCACAACGAAACTGTCGTTTTTATTTTTCTTACTTTCGATTGCACCTGTGCTGTATATCTTATCAATCGTATATATTGAAGAGGACTACTCCTATAGAATTAAAATGAAATGTTTAAATTAGCTTGATAAAGCTGTAATTGGTATTGAGGCTAGGCAAGGCTATTTTACGACGATAGACCTACCAGATTCACGCTTGGGAAAAATATCTCCACCCTTTTCCCTCACAGGAGCTAACTTGTAAAGGTGTGTGAACAGAGCAAAGCTCCAGTTTCGAGTTGCTCCTCATGAGGTAAATTGCTTTATTGAAAAGGCGACAAAAATTGTAACTGGCCACAACAGAAACTGCAAATTATAGAGGAACAATCAGAGCAATAGCGAAGTGCTCTTTGAAATTAGGGACACAACTGGGGGGGTATGGATGGAACACAGACTCAGGGAAGACATGACGCCCATTCCTGGTTCACTGAGTTCCAACTGGACTGTGTCATCAGGAATGGGGTAGTTCCAGAATGGTTCCATGGCATTATTTCCAGGAAGGTTGCTGAGGAAATGCTCCTGTCCAATCCCACAGGCTACTTCCTGATCCGTGTCAGTGAAAGCAGGATAGGATACACACTCTCCTATCGTGCCACTGATCGGTGCAGGCACTTCATGATCGATGTGCTGAAGGACAATCGCTACATTATTGTAGGAGAGGACATGCATCACAGCTCACTGCAAGACCTGGTGAACTTTCACCGCAGGGTGCCTATCATGCCTTTCAATGAGCTGCTGACTGTAGCTTGTGGACAGGTATCAAAGGACAAGACTGATTACGCAGAACTGTTATTCCCCAAAAGACCAGCCATGAACCCTAATCATGGTGTGTTGCCAAATAACCCCCCACACATGCACAGTAGTACTCATCTGAAAGTAGCTGAGGACATTCCACCTGCCCTCCCACATCGTCCCAGCACATTGAGTGACCCTGCCGGCCCACCTCCAAACACTAGCAAACCACCTGTATCTCCAAACACACCTTCTCCCAGACTCTACCCCTGCCTGGAGACTGAGTTAAACACACTGAGCTTCCAAACCCCAAGCATGGTAGATCATACTGCTAAACCAGTGCCATTGCCCAGGAAAATGCATGTAGTCACCACGGCCCAGCCGGACCAACCTCCTGAGTTACCTGCCAGAGGCCCTGCTCTACCACAGAGAAAGGACACGGACCAGAGCAGCACAACATCTAAAGGTCCCACAGAACCCAGGACTGTGGGTACAGGCAGACCACAGACCCGACCAAACACACACCACCAGGACCCAAACTCCAACCAACAGAAGAATCAAGATGTAAAGTCCGTGGTCAGCAACCTGAGCTACTTCAGGAGGAAGTTCCATAAGAAGAGAAGTGCCTCTCAGGAGCACATGTATGCAGAGATTAGTGTGGAGGATGAGCAGGGGCAAGACCAGGGGAAACTCACAGCCGTGGAGGCTAGAGATAGGGACATTGATACAGCTGCTGATAACGAGTATCAGATGctaccaggagagattgacaatGGCCTTCCACCCATCACTGCTGCCACCGCTGTTAGACCCACGGACTGTGGGTTACTGCCAGAGTATCTGAACCCTCCTCCTTTTGCCCCTGGATACTAATGTCCACTTCTCTACCCTCAGGATGGCTGGGTGGCCAAACGGACAAATGCATTTTGAGAAGGCACTGATGAGTTAAAGTTAGTCTGAAGATTTTCTAGTTTAACTGGATATATCTAGAATCTCTTTTACAATGTGACATTGAGAACTATTTATGTCTGCAACCAGCTCTGGTTAGTGATTAGACCATATCCAATGTTTTTTTACAGTGCTATGTATTGGTCAACTATTTCATATCAAATGTGAAAAtacttttgttttatttaatttgatGTGAGGAATTATGTTAGACATCTATGTATTATTTTCATTAAAATACAACCATGGCAAA
>XM_021603654.2
AATGTCAGATATTTATATCCCAAGATCGACCACAACGAAACTGTCGTTTTTATTTTTCTTACTTTCGATTGCACCTGTGCTGTATATCTTATCAATCGTATATATTGAAGAGGACTACTCCTATAGAATTAAAATGAAATGTTTAAATTAGCTTGATAAAGCTGTAATTGGTATTGAGGCTAGGCAAGGCTATTTTACGACGATAGACCTACCAGATTCACGCTTGGGAAAAATATCTCCACCCTTTTCCCTCACAGGAGCTAACTTGTAAAGGTGTGTGAACAGAGCAAAGCTCCAGTTTCGAGTTGCTCCTCATGAGGTAAATTGCTTTATTGAAAAGGCGACAAAAATTGTAACTGGCCACAACAGGACACAACTGGGGGGGTATGGATGGAACACAGACTCAGGGAAGACATGACGCCCATTCCTGGTTCACTGAGTTCCAACTGGACTGTGTCATCAGGAATGGGGTAGTTCCAGAATGGTTCCATGGCATTATTTCCAGGAAGGTTGCTGAGGAAATGCTCCTGTCCAATCCCACAGGCTACTTCCTGATCCGTGTCAGTGAAAGCAGGATAGGATACACACTCTCCTATCGTGCCACTGATCGGTGCAGGCACTTCATGATCGATGTGCTGAAGGACAATCGCTACATTATTGTAGGAGAGGACATGCATCACAGCTCACTGCAAGACCTGGTGAACTTTCACCGCAGGGTGCCTATCATGCCTTTCAATGAGCTGCTGACTGTAGCTTGTGGACAGGTATCAAAGGACAAGACTGATTACGCAGAACTGTTATTCCCCAAAAGACCAGCCATGAACCCTAATCATGGTGTGTTGCCAAATAACCCCCCACACATGCACAGTAGTACTCATCTGAAAGTAGCTGAGGACATTCCACCTGCCCTCCCACATCGTCCCAGCACATTGAGTGACCCTGCCGGCCCACCTCCAAACACTAGCAAACCACCTGTATCTCCAAACACACCTTCTCCCAGACTCTACCCCTGCCTGGAGACTGAGTTAAACACACTGAGCTTCCAAACCCCAAGCATGGTAGATCATACTGCTAAACCAGTGCCATTGCCCAGGAAAATGCATGTAGTCACCACGGCCCAGCCGGACCAACCTCCTGAGTTACCTGCCAGAGGCCCTGCTCTACCACAGAGAAAGGACACGGACCAGAGCAGCACAACATCTAAAGGTCCCACAGAACCCAGGACTGTGGGTACAGGCAGACCACAGACCCGACCAAACACACACCACCAGGACCCAAACTCCAACCAACAGAAGAATCAAGATGTAAAGTCCGTGGTCAGCAACCTGAGCTACTTCAGGAGGAAGTTCCATAAGAAGAGAAGTGCCTCTCAGGAGCACATGTATGCAGAGATTAGTGTGGAGGATGAGCAGGGGCAAGACCAGGGGAAACTCACAGCCGTGGAGGCTAGAGATAGGGACATTGATACAGCTGCTGATAACGAGTATCAGATGctaccaggagagattgacaatGGCCTTCCACCCATCACTGCTGCCACCGCTGTTAGACCCACGGACTGTGGGTTACTGCCAGAGTATCTGAACCCTCCTCCTTTTGCCCCTGGATACTAATGTCCACTTCTCTACCCTCAGGATGGCTGGGTGGCCAAACGGACAAATGCATTTTGAGAAGGCACTGATGAGTTAAAGTTAGTCTGAAGATTTTCTAGTTTAACTGGATATATCTAGAATCTCTTTTACAATGTGACATTGAGAACTATTTATGTCTGCAACCAGCTCTGGTTAGTGATTAGACCATATCCAATGTTTTTTTACAGTGCTATGTATTGGTCAACTATTTCATATCAAATGTGAAAAtacttttgttttatttaatttgatGTGAGGAATTATGTTAGACATCTATGTATTATTTTCATTAAAATACAACCATGGCAAA
>XM_021603655.2
AATGTCAGATATTTATATCCCAAGATCGACCACAACGAAACTGTCGTTTTTATTTTTCTTACTTTCGATTGCACCTGTGCTGTATATCTTATCAATCGTATATATTGAAGAGGACTACTCCTATAGAATTAAAATGAAATGTTTAAATTAGCTTGATAAAGCTGTAATTGGTATTGAGGCTAGGCAAGGCTATTTTACGACGATAGACCTACCAGATTCACGCTTGGGAAAAATATCTCCACCCTTTTCCCTCACAGGAGCTAACTTGTAAAGGTGTGTGAACAGAGCAAAGCTCCAGTTTCGAGTTGCTCCTCATGAGAAACTGCAAATTATAGAGGAACAATCAGAGCAATAGCGAAGTGCTCTTTGAAATTAGGGACACAACTGGGGGGGTATGGATGGAACACAGACTCAGGGAAGACATGACGCCCATTCCTGGTTCACTGAGTTCCAACTGGACTGTGTCATCAGGAATGGGGTAGTTCCAGAATGGTTCCATGGCATTATTTCCAGGAAGGTTGCTGAGGAAATGCTCCTGTCCAATCCCACAGGCTACTTCCTGATCCGTGTCAGTGAAAGCAGGATAGGATACACACTCTCCTATCGTGCCACTGATCGGTGCAGGCACTTCATGATCGATGTGCTGAAGGACAATCGCTACATTATTGTAGGAGAGGACATGCATCACAGCTCACTGCAAGACCTGGTGAACTTTCACCGCAGGGTGCCTATCATGCCTTTCAATGAGCTGCTGACTGTAGCTTGTGGACAGGTATCAAAGGACAAGACTGATTACGCAGAACTGTTATTCCCCAAAAGACCAGCCATGAACCCTAATCATGGTGTGTTGCCAAATAACCCCCCACACATGCACAGTAGTACTCATCTGAAAGTAGCTGAGGACATTCCACCTGCCCTCCCACATCGTCCCAGCACATTGAGTGACCCTGCCGGCCCACCTCCAAACACTAGCAAACCACCTGTATCTCCAAACACACCTTCTCCCAGACTCTACCCCTGCCTGGAGACTGAGTTAAACACACTGAGCTTCCAAACCCCAAGCATGGTAGATCATACTGCTAAACCAGTGCCATTGCCCAGGAAAATGCATGTAGTCACCACGGCCCAGCCGGACCAACCTCCTGAGTTACCTGCCAGAGGCCCTGCTCTACCACAGAGAAAGGACACGGACCAGAGCAGCACAACATCTAAAGGTCCCACAGAACCCAGGACTGTGGGTACAGGCAGACCACAGACCCGACCAAACACACACCACCAGGACCCAAACTCCAACCAACAGAAGAATCAAGATGTAAAGTCCGTGGTCAGCAACCTGAGCTACTTCAGGAGGAAGTTCCATAAGAAGAGAAGTGCCTCTCAGGAGCACATGTATGCAGAGATTAGTGTGGAGGATGAGCAGGGGCAAGACCAGGGGAAACTCACAGCCGTGGAGGCTAGAGATAGGGACATTGATACAGCTGCTGATAACGAGTATCAGATGctaccaggagagattgacaatGGCCTTCCACCCATCACTGCTGCCACCGCTGTTAGACCCACGGACTGTGGGTTACTGCCAGAGTATCTGAACCCTCCTCCTTTTGCCCCTGGATACTAATGTCCACTTCTCTACCCTCAGGATGGCTGGGTGGCCAAACGGACAAATGCATTTTGAGAAGGCACTGATGAGTTAAAGTTAGTCTGAAGATTTTCTAGTTTAACTGGATATATCTAGAATCTCTTTTACAATGTGACATTGAGAACTATTTATGTCTGCAACCAGCTCTGGTTAGTGATTAGACCATATCCAATGTTTTTTTACAGTGCTATGTATTGGTCAACTATTTCATATCAAATGTGAAAAtacttttgttttatttaatttgatGTGAGGAATTATGTTAGACATCTATGTATTATTTTCATTAAAATACAACCATGGCAAA
>XM_021603656.2
AATGTCAGATATTTATATCCCAAGATCGACCACAACGAAACTGTCGTTTTTATTTTTCTTACTTTCGATTGCACCTGTGCTGTATATCTTATCAATCGTATATATTGAAGAGGACTACTCCTATAGAATTAAAATGAAATGTTTAAATTAGCTTGATAAAGCTGTAATTGGTATTGAGGCTAGGCAAGGCTATTTTACGACGATAGACCTACCAGATTCACGCTTGGGAAAAATATCTCCACCCTTTTCCCTCACAGGAGCTAACTTGTAAAGGTGTGTGAACAGAGCAAAGCTCCAGTTTCGAGTTGCTCCTCATGAGGACACAACTGGGGGGGTATGGATGGAACACAGACTCAGGGAAGACATGACGCCCATTCCTGGTTCACTGAGTTCCAACTGGACTGTGTCATCAGGAATGGGGTAGTTCCAGAATGGTTCCATGGCATTATTTCCAGGAAGGTTGCTGAGGAAATGCTCCTGTCCAATCCCACAGGCTACTTCCTGATCCGTGTCAGTGAAAGCAGGATAGGATACACACTCTCCTATCGTGCCACTGATCGGTGCAGGCACTTCATGATCGATGTGCTGAAGGACAATCGCTACATTATTGTAGGAGAGGACATGCATCACAGCTCACTGCAAGACCTGGTGAACTTTCACCGCAGGGTGCCTATCATGCCTTTCAATGAGCTGCTGACTGTAGCTTGTGGACAGGTATCAAAGGACAAGACTGATTACGCAGAACTGTTATTCCCCAAAAGACCAGCCATGAACCCTAATCATGGTGTGTTGCCAAATAACCCCCCACACATGCACAGTAGTACTCATCTGAAAGTAGCTGAGGACATTCCACCTGCCCTCCCACATCGTCCCAGCACATTGAGTGACCCTGCCGGCCCACCTCCAAACACTAGCAAACCACCTGTATCTCCAAACACACCTTCTCCCAGACTCTACCCCTGCCTGGAGACTGAGTTAAACACACTGAGCTTCCAAACCCCAAGCATGGTAGATCATACTGCTAAACCAGTGCCATTGCCCAGGAAAATGCATGTAGTCACCACGGCCCAGCCGGACCAACCTCCTGAGTTACCTGCCAGAGGCCCTGCTCTACCACAGAGAAAGGACACGGACCAGAGCAGCACAACATCTAAAGGTCCCACAGAACCCAGGACTGTGGGTACAGGCAGACCACAGACCCGACCAAACACACACCACCAGGACCCAAACTCCAACCAACAGAAGAATCAAGATGTAAAGTCCGTGGTCAGCAACCTGAGCTACTTCAGGAGGAAGTTCCATAAGAAGAGAAGTGCCTCTCAGGAGCACATGTATGCAGAGATTAGTGTGGAGGATGAGCAGGGGCAAGACCAGGGGAAACTCACAGCCGTGGAGGCTAGAGATAGGGACATTGATACAGCTGCTGATAACGAGTATCAGATGctaccaggagagattgacaatGGCCTTCCACCCATCACTGCTGCCACCGCTGTTAGACCCACGGACTGTGGGTTACTGCCAGAGTATCTGAACCCTCCTCCTTTTGCCCCTGGATACTAATGTCCACTTCTCTACCCTCAGGATGGCTGGGTGGCCAAACGGACAAATGCATTTTGAGAAGGCACTGATGAGTTAAAGTTAGTCTGAAGATTTTCTAGTTTAACTGGATATATCTAGAATCTCTTTTACAATGTGACATTGAGAACTATTTATGTCTGCAACCAGCTCTGGTTAGTGATTAGACCATATCCAATGTTTTTTTACAGTGCTATGTATTGGTCAACTATTTCATATCAAATGTGAAAAtacttttgttttatttaatttgatGTGAGGAATTATGTTAGACATCTATGTATTATTTTCATTAAAATACAACCATGGCAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23699 HSH2D; hematopoietic SH2 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603653.2 False 1999 mRNA 0.46 7 60407553 60411038
XM_021603654.2 False 1941 mRNA 0.46 6 60407553 60411038
XM_021603655.2 False 1949 mRNA 0.46 7 60407553 60411038
XM_021603656.2 True 1891 mRNA 0.46 6 60407553 60411038

Neighbor

gene id symbol gene type direction distance location
LOC110524213 LOC106613698 coding upstream 105 60398990 ~ 60407448 (+)
LOC110524211 tpm4 coding upstream 12378 60368391 ~ 60395175 (+)
LOC118964531 NA coding upstream 139706 60223797 ~ 60267847 (+)
LOC110524208 LOC106613692 coding upstream 227279 60165608 ~ 60180274 (+)
malt2 LOC106613687 coding upstream 245619 60133236 ~ 60161934 (+)
LOC110524215 LOC106613700 coding downstream 16072 60427110 ~ 60432323 (+)
LOC110524216 LOC106613701 coding downstream 24725 60435763 ~ 60452642 (+)
LOC110522875 NA coding downstream 69130 60480168 ~ 60484430 (+)
ctns LOC106613706 coding downstream 123495 60534533 ~ 60543487 (+)
LOC110524221 ranbp3 coding downstream 135143 60546181 ~ 60566583 (+)
G422500 NA non-coding upstream 84634 60322657 ~ 60322919 (+)
G421867 NA non-coding upstream 108987 60297185 ~ 60298566 (+)
G421862 NA non-coding upstream 196798 60210506 ~ 60210755 (+)
G421861 NA non-coding upstream 197340 60209935 ~ 60210213 (+)
G421846 NA non-coding upstream 211206 60196059 ~ 60196347 (+)
G422561 NA non-coding downstream 10393 60421431 ~ 60421644 (+)
G422562 NA non-coding downstream 11118 60422156 ~ 60422600 (+)
G422563 NA non-coding downstream 12512 60423550 ~ 60423839 (+)
G422566 NA non-coding downstream 22173 60433211 ~ 60433863 (+)
G422570 NA non-coding downstream 33274 60444312 ~ 60444602 (+)
G420634 NA other upstream 1463336 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 1990777 58411240 ~ 58418268 (+)
G419452 NA other upstream 2507905 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3040216 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3449388 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 283219 60694220 ~ 60695905 (+)
G423922 NA other downstream 1310499 61721537 ~ 61722024 (+)
G424079 NA other downstream 1694485 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1872114 62283054 ~ 62327772 (+)
G425224 NA other downstream 2634052 63045090 ~ 63051530 (+)

Expression


Co-expression Network