LOC118964632


Basic Information

Item Value
gene id LOC118964632
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60414163 ~ 60426534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051825.1
GTTCCCACCTAGATTCCCGGACCAGAGGGTGGCTAGATGCACGCTGCCACACGGGCCTTATATGGGGATATATTAAACCTGCTACTCCCCAAATCAAAGCCCACCAGATTCCTCAAGACCTTGCAAGACCCAGACCCCAGCAGACACCACCACAAGAAAACCCAAGGATTCATCAGACGCACAAGGGAGAGATGGGTCCATCCTACGCCGAGGATGGACACAtattccctgtctctccttcttatCTAGGTGGGCAACGACACCTCACTCGCTCATGTTTCAGTGTCagctggtggagggagagatggggaggatgtGTCCATCCGTTGCATAGGAAAGATACATCTTCCCAATCTCTCCTCCTGGTGGGCAGCAATATACTTCACTCTAGTCCACCTCGTTGTGTTATAGTGAAATGCCCCTCAGCGTTAATTCAGGAAATGCTCATCAAGCATGGAACAGAAAAGAATCATCATACACCTCATAGTGGAATGCTGCAGAATATGTGATCAAAGAAGGCCTTTTGCCGTCTAAGGATCAACAAGGTCTCCAGAGCCTGGAAACTAAACTTCAGGGGGCCGACTTCAAACTGAAACTGTTGTGCTCTTGTTCTGCTGCTGTCCGGAAGAATCCCAAAACATCTAAAGTACAGTGGAGTCAGTCATGAAGAGGTGGTTGCAGCTGGCAGCAGAccgggaaggaggaaggaggagacgaGCAAGGGGTGTGGAGGCACCTGTGCCATGATGGACTTGGGTAGAGGGGTGTATTTGAGGGTGGAGAATGGTATGGAGTGAGGGATGGTATGTCCTAGCTGGAGAGATTGGGAGGATGTGTCCATCTGACACCGAAAAGCGACACCTTCCCTGTCCCCTTCTCCTGTGGGGCAGCCATACCTCACTCACTCATGCTTCAGTACCAGCTGGGGAAGAGAGATGTGGAGGATGTGTTCATCCGAAGCTGAGGATAGACACATCTTCCTTGTCTCTCCTTCCAGCAGCTCTGAAAATATATACCAACCTTATCAAATTCAGGTAGAATTCTCAGGTTTTGACCTCCTGTTGAAGTGTTTGTCATTTGAGTATGACTATCCCTTTAATTACTTTTTCCCCTTCCTACTTACACTGGGCTCACAAATAGTTAATACAACACAATAGTGcaaaaaatccaaataaaatacagaaaacaATTAACCCTATCAACACCAGTGGGCTTCACATGGGAAGGGGAAACAGTAATTAACCCTTTAGACCCCAATAGAATTCTAGAATGCTGCTGTAGAATGCTGCTTTATTAGAATGGTGCCGGGAGGGGATTGCCGCGGTTCTCACGGCTCCTGACAAATTTtgatattttgtgtgtttttaactTTTTTTGCCATcgtttcctatgaccgaaaatagcttttggacatcagaacagcgatttcTCACCTCGATCTGGACAAGGatgttttctttaatgagtcgtaCAGAAAGGATATAATGTTCTTCCCGGACCAGGCCCAAAACCCTGTCATTCGTAAGAAGAGGAGGTGCCGCTCCAGGGGTCGACAAGCCGGATGCCTGGCGAGACTGCATCGGCGAATGGATAATCCGCCTCTACCCCCCGTTCCACTGGTGAACGTgaaatcactggagaataaactggatgaacttcgttcgagactatcctatcaacgggatattaaaaactgtaatgtcCTATATTTCTCCTATAGTcctggctgaacaaggacatggataatatacagttagcTGGGTTTTTCGTGCATCAACAAGACAGAGCAGCAGCCTCCTGTAAGATTGGGGGGTGATCTATTTTTCTTTATCAACAACAGTTGGTGTGCTCTAATATTAAGGaaatctcaaggttttgctcgcctgttAGTACTTCATGATAAACTGTaaaccacactatttaccaagagagttttcatctatcttcttcatagctgtctatttaccaccacatacCGATGCTGGTACTAAGGCTGCACTCAGCGAGCTGTAGAAGGTCATAAGTAAACAAGAAAATCCTCCTCTTAGTGGCCGGgcactttaatgcaggaaaactaaaatccgttttacctcatttctaccagtatgtcaaaaaactctagaccacctttactccacacacagagatgcgcaCAAAGCTCTTTTGCACTCCACCCACAAGAGCCATAGTGAGGTcagacactgatgttgggtgattagtcctggctcgcagtttacattccaattcatcccaaatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051825.1 True 2257 mRNA 0.46 3 60414163 60426534

Neighbor

gene id symbol gene type direction distance location
LOC110524214 LOC106613699 coding downstream 15301 60395024 ~ 60398862 (-)
lpl lpl coding downstream 107523 60298204 ~ 60306640 (-)
LOC110524209 LOC106613694 coding downstream 124732 60282374 ~ 60289431 (-)
LOC110524206 ap1m1 coding downstream 279891 60116530 ~ 60134272 (-)
klf2a LOC106613686 coding downstream 432544 59979007 ~ 59981619 (-)
ccl44 LOC106613702 coding upstream 33313 60459847 ~ 60462194 (-)
LOC110524218 LOC106613703 coding upstream 44778 60471312 ~ 60476448 (-)
LOC110524219 LOC106613704 coding upstream 83145 60509679 ~ 60513480 (-)
LOC110524222 LOC106613707 coding upstream 178674 60605208 ~ 60626475 (-)
ndufa11 LOC106613708 coding upstream 252164 60678698 ~ 60682883 (-)
G423057 tpm4 non-coding downstream 20969 60368429 ~ 60393194 (-)
G423073 NA non-coding downstream 51217 60360590 ~ 60362946 (-)
G422481 NA non-coding downstream 104092 60308829 ~ 60310071 (-)
G422474 NA non-coding downstream 117676 60296174 ~ 60296487 (-)
G423090 NA non-coding upstream 6806 60433340 ~ 60433586 (-)
G423102 NA non-coding upstream 9127 60435661 ~ 60436355 (-)
G423107 LOC106613701 non-coding upstream 14765 60441299 ~ 60441555 (-)
G423108 NA non-coding upstream 15182 60441716 ~ 60441960 (-)
G423110 NA non-coding upstream 15679 60442213 ~ 60442418 (-)
G422347 NA other downstream 313107 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1275906 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1377864 59026103 ~ 59036299 (-)
G420421 NA other downstream 2000020 58413128 ~ 58414143 (-)
G420193 NA other downstream 2300103 58112387 ~ 58114060 (-)
LOC110524239 LOC106573579 other upstream 632460 61058949 ~ 61081864 (-)
G424474 NA other upstream 1190336 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1223433 61649967 ~ 61651775 (-)
G424502 NA other upstream 1232499 61659033 ~ 61659585 (-)
G424649 NA other upstream 1461664 61888198 ~ 61927422 (-)

Expression


Co-expression Network