LOC110524215 (LOC106613700)


Basic Information

Item Value
gene id LOC110524215
gene name LOC106613700
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60427110 ~ 60432323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603663.2
GATGACTAACCACGGAAGGCAGTATGACATCACCAACCCTGCCTTTACATGCCAGGAATCATTTGCTAGTTGTTACTCACGCTTAGCAAGTTGCTTCGAGTATTGTATGATTTAATGAAAGGAGCAAAAACGACTTTAGACCGTTGAGTTATTTGCAACCGGGGAGAAACACAAAAGTGTCTGAACATTCTGAAACAATGTCTTTCATCCCAGGACAACCAGTTACTGCTGTTGTGCAACGGATAGAAATCCGCAAACTCCGCCAGGGTGAACATTTGATCCTGGGTTTCAGCATTGGAGGAGGAATAGACCAAGACCCGGGCCAGAACCCCTTCTCTGAAGACAAGTCAGACAAGGGCATCTATGTGACACGGGTGACACCAGAGGGACCAGCAGAAGTTGCAGGCTTGATGATGGGAGACAAAGTAATGCAGGTAAATGGATGGGATATGACCATGGTGACACACGATCAGGCACGCAAACGGCTGACGAAGAAGAATGAAGATGTCGTGCGGCTACTGGTGACCAGGAAATCCCTGGAGCAGGCTGTCAAACATTCTATGATGTAATGACTccaaacagtagcagcagcttggTGACCTCATTGTCTTTCGACAGGTGGCGTCCCTTCTATGCAACGCTAGTCCTTTCATGCAGACTGAGTTCGCTATCTGACGTCAGACAATGCCAGTGACCGAAAGCACAGTATTCCAAAGCTTTTCTTGCAAGCTGTAAGGTTGGGGTGAATTCCATATCAAATTTGTCAATTTAGGAGGTGGAAAGAAAATGCTATTCAAGAATTGAAAATGGGCATTTATTTTCCTTCAGATttttcacttcctgaattgatggAGTTGAAATTAAATTGATTACAGTCCTACTCACATTTTCCCAATTCAAACATGGTACAACCCTTTTATAACATCGCTATAGAACCAATATGGTGCAAGTTATTGGGATCATTAATGCCTTTACTAGCTGACATGAGAATGACTTATTAAGTAATTAGTACACTTCATTACAGTTAATGATCTGTCACTTTTAATTTAGCCAACTAATCATTTGATGTTTTCAAGTCGATGTCTTTACAAGCCAAAGGAAAACAATGCCAAGAAACTGTAGATTGATAAAGGATGCTTTGCAAACACATGTGTACAACGCACATAGCATTTATCTGCTACGGTAATTTGTATGTATTCCATAGAGGCTTCCTGTTTATATGAGTTGTTATGTTTGATGTATGGCATTAATAAGAATGGAACGCTTAGTGCTTAACACTGCTCTGTGTTGGTCGAAATGAATGAATATTCATCGGGCTTGGACAATATATCTTTATTTTGGTATCTTTATCCATGCAGTGCATCTACCAAAGTAACAAGCACAGCCAAACTGCATACTTTATATTTCATTATACTCTAATTGTACTTGTCTACCAAATACTGTAATACTCATTTGAGGATTGGATTTTTGTAGGTAGTGTAGCAGGAACACAGTTACTTCTCATTCTCAACCCTCTGGGTATAATTCATTTGGTGTTGCCATCGTTGCCTGGAAATCAAGGCTAGGGTATAGTCAACTTTAAGTGCCTTCTTTCTCAGGTTTATATAGAGAAAGTGGCATGTTGGATTGTTAATTAGGTTGCTTGCTGGTTGATGTCAGACAGCTAATACACTTTAGTTGAATGCTGAACCAACGTTGAAGGATCAAATGAAATTAGACGTTTGAATACACTTGAATACAAATTACACTCTAGTGAGTACCACTAAAACGTGATGGCGCCAATAGGGTTTTAGTATTCATGCTCCTTTCCATTCCTATATAGTTCAGTAATATATCCTTTTTCACTGCCTCAGCCATGTTTTACACAGTGATGCCTCACTTTTGTAATCCAATCTTATCAATTCCTATTCAAATGAATCAAAGGTAAAATAATATTGTAATGTGGATTGCAATAGTACCTAGTATGTTCTACTAATTCAATATTTTgtatggctttgtttttgctagAATTCTTTGAATTGGGAGATTATCATTATACTGTATATCGTTGGCAGAGTGATGTAACTAAGTCTACACACACTTTTGTAAAGAATTAACACTTCAAAAGACTGCCCAAACTTTTGATAAATGTAGCCTTGCATGAATTTTCTATAAAGTTGATTTCTATCAATATGTCGTTTGTGTTAAAATATCTTTTTTTATAATTACTCCAAGTATATGAGGAAAAACTTTGAATGATCATTTTGGCATATGATTGTATATTGGACACTTTCCGAATGTTCTTTAACATAAATCAAAAATGAACTGAAA

Function

NR:

description
PREDICTED: tax1-binding protein 3-like

GO: NA

KEGG:

id description
K24067 TAX1BP3; Tax1-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603663.2 True 2310 mRNA 0.38 4 60427110 60432323

Neighbor

gene id symbol gene type direction distance location
hsh2d LOC106613697 coding upstream 16072 60407553 ~ 60411038 (+)
LOC110524213 LOC106613698 coding upstream 19662 60398990 ~ 60407448 (+)
LOC110524211 tpm4 coding upstream 31935 60368391 ~ 60395175 (+)
LOC118964531 NA coding upstream 159263 60223797 ~ 60267847 (+)
LOC110524208 LOC106613692 coding upstream 246836 60165608 ~ 60180274 (+)
LOC110524216 LOC106613701 coding downstream 3440 60435763 ~ 60452642 (+)
LOC110522875 NA coding downstream 47845 60480168 ~ 60484430 (+)
ctns LOC106613706 coding downstream 102210 60534533 ~ 60543487 (+)
LOC110524221 ranbp3 coding downstream 113858 60546181 ~ 60566583 (+)
LOC110524224 LOC106613709 coding downstream 258150 60666192 ~ 60692763 (+)
G422563 NA non-coding upstream 3271 60423550 ~ 60423839 (+)
G422562 NA non-coding upstream 4510 60422156 ~ 60422600 (+)
G422561 NA non-coding upstream 5466 60421431 ~ 60421644 (+)
G422514 NA non-coding upstream 8698 60331178 ~ 60418412 (+)
G422500 NA non-coding upstream 104191 60322657 ~ 60322919 (+)
G422566 NA non-coding downstream 888 60433211 ~ 60433863 (+)
G422570 NA non-coding downstream 11989 60444312 ~ 60444602 (+)
G422612 NA non-coding downstream 69729 60502052 ~ 60502319 (+)
G422618 NA non-coding downstream 77361 60509684 ~ 60573995 (+)
G422654 NA non-coding downstream 159148 60591471 ~ 60591691 (+)
G420634 NA other upstream 1482893 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2010334 58411240 ~ 58418268 (+)
G419452 NA other upstream 2527462 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3059773 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3468945 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 261934 60694220 ~ 60695905 (+)
G423922 NA other downstream 1289214 61721537 ~ 61722024 (+)
G424079 NA other downstream 1673200 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1850829 62283054 ~ 62327772 (+)
G425224 NA other downstream 2612767 63045090 ~ 63051530 (+)

Expression


Co-expression Network