LOC110524216 (LOC106613701)


Basic Information

Item Value
gene id LOC110524216
gene name LOC106613701
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60435763 ~ 60452642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977999.1
CTCTTTCCTCCCACACAGACCTCTGCTCGATGTCAAGGCGTTTTTCTATCGCGCCGGAGGGCTGGAGAAAAAGCGCTTAAGCTCATGTAGTAAATTAAAATGAACTGtagatgtgtgtgagtgtgtgctacTGTACTTCATGTGAGTGGAAAGCAGGCAAGGAAAGAATGAACCATACCGTGTGAGGACCGTCATAAGATAAGAGTGAAGAACCATCAGTTGAAGACGTTCCACCAGGACCAGAGAAGCTCTCCATGACTGTGAACTATCTCAATCCGTGAAGACAAGAAAGGAAGCATCAGAAACAGGTTTCCCACGAAACCTGCCTCCTGGACCAGGTGCTGGAGCTGATTATGAATGAGAAGCCCCCCAACACTGCCAGCCTTTTCCTGAACGAGGACGCCGACAAGCCCCCCCTCCCCAATCGAGGCCTCTGGCGGCGGCTACGTAGAGCCATGCAGAAGAGAGCGGCCAGCACCCAGGACAGGATGAGCACCATCACTAAGGAGAGCATCAATGGCTTCCTGAGACGCAACCTCTTTGTCCTCCTCACCATCGCAGCAGTGGCTCTGGgtgtcATGCTGGGTTTCGCCCTGCGGCCCCACAACCTGACCCTCAGGGAGATCAAGTACTTTGCCTTCCCTGGAGAGCTGCTGATGAGGATGCTGCAGATGCTGGTTCTGCCTCTCATCGTCTCTAGCCTGGTCACAGGTATTTCCTCTCTGGACAGCAAAGCGTCTGGGAAGATGGGAATGCGGGCTGTGGGTTATTACATGGTGACCACCCTCATCGCGGTCTTCATTGGCATCGTCATTGTGATTGTCATCAAACCAGGGAAAGGCCATAGGGACAGCCCAGTGGCCTCTAGCGGTACCATAGAGCCGGTACACGCAGCTGACGCCTTCCTGGATCTCATCAGGAACATGTTCCCTCCTAATTTGGTGGAAGCCTGTTTCAAGCAGTACAAAACGGTCTACAAGAAGACCATCCACACGAAGAACGTGACTGTTGCCCTCAGTCTGACTGACTCCCTCAACGCTACAGAGGCTGCCTTGGCTGTTAACATGAGCAGAGTGCTGCAGACCATCCAGGAGACAGTGGTGGAGATGATCCCCATGTCTGGTTCCTCTAACGGGGTGAACGCCCTGGGTCTGGTGGTGTTCTCCATGTGCTTCGGCCTGGTCATTGGCAGCATGAAGCAGCAGGGACAGGCCCTCAGGGACTTCTTCGACTGCCTCAACGAAGCCATCATGCGCCTGGTGGCCATCGTCATCTGgtatgCTCCAGTGGGCATCCTGTTCCTCATAGCAGCTAAGATCGTGGAGATGAAGAATCTGGCCGAGGTGGGAGGTCAGCTGGGGATGTACACAGTGTCTGTCATCGTGGGTCTGCTCATCCACGGCTTGTTTGTCCTGCCCCTGCTCTACTTCCTGGTCACCAGGAAGAACCCCTACACTTTCATGGCTGGCCTTCTGCAGGCCCTCATCACAGCACTGGGAACATCCTCTAGCTCTGCCACCCTGCCCATCACCTTCCGCTGTCTGGAGGAGAACAACCGTGTGGACAAGAGAGTGACACGCTTTATCCTTCCCGTGGGTGCCACCATCAACATGGATGGCACTGCCCTCTACGAAGCCGTGGCAGCCATCTTCATCGCCCAAGTCAACGACATGGAACTCAACTTTGGCCAGATCCTCACCATCAGTATCACAGCAACAGCTGCCAGCATCGGCGCAGCAGGCATCCCACAGGCTGGTCTGGTTACCATGGTAATCGTATTGACATCGGTGGGACTACCCACAGAGGACATAACGCTGATCATCGCTGTGGATTGGTTCCTGGATCGCTTAAGGACTACCACCAACGTGCTGGGGGACTCTATCGGGGCAGGCATCGTGGAGCACCTGTCTCGCCAGGAGTTGCAGAGCCAGGATGTTGAGGTGGGCAACTCAGTGATTGAAGAGAATGAGAAGCCCTACCAGCTCATCTGCCAGAAAAACGACTCAGTGAAGCATCGCAACAGTGAGACCCCCATGTAGGGGTTACGACAGTCTGAAAGCATCCACTAGCCGCTACCGTACTTCTTCAGTGTTTGTAGATATGGAGGAACTGGATAGGTGTAAACAATATGGGGAAAGCTATTGGATGCCGAGGTGAAGCCATCACCATATTGCTAACACTTATCTGGGTAACTTCAGATCTGCAAACACTGTAGGGATAGTGGCTGGAGATCGTTTTGACACTGTTAACCATATCAACTGTTTTGGTCCTTTCAGTCCAAATCTGAGATGCATCTCAATtgtctagagcagtggttcccaaactttttatagtcccgtgcCCCTTCAAACATttaacctccagctgtaccccctctagcaccagagtcagcgcactctcaaatgttgttttttgccatcattgtaagcctgccacacacacattatatgatacatttattaaacataaaaattagtgtgagtttttgtcacaaccctgctagtgggaagtgacaaagaggaggaccagggcacaaataataatatattcataataaataattttgctctttatttagccatcttacatattaaCTTTATTTGTTCATCTAAAATTGTGAAttactcaccacaggttaatgagaagggtgtgcataactctgcaatgttgggttgtattggagagagtctcagtcttaaatcattttccacacacattctgt

Function

NR:

description
excitatory amino acid transporter 1-like

GO: NA

KEGG:

id description
K05614 SLC1A3, EAAT1; solute carrier family 1 (glial high affinity glutamate transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977999.1 True 2722 mRNA 0.51 12 60435763 60452642

Neighbor

gene id symbol gene type direction distance location
LOC110524215 LOC106613700 coding upstream 3440 60427110 ~ 60432323 (+)
hsh2d LOC106613697 coding upstream 24725 60407553 ~ 60411038 (+)
LOC110524213 LOC106613698 coding upstream 28315 60398990 ~ 60407448 (+)
LOC110524211 tpm4 coding upstream 40588 60368391 ~ 60395175 (+)
LOC118964531 NA coding upstream 167916 60223797 ~ 60267847 (+)
LOC110522875 NA coding downstream 27526 60480168 ~ 60484430 (+)
ctns LOC106613706 coding downstream 81891 60534533 ~ 60543487 (+)
LOC110524221 ranbp3 coding downstream 93539 60546181 ~ 60566583 (+)
LOC110524224 LOC106613709 coding downstream 237831 60666192 ~ 60692763 (+)
LOC110524226 LOC106573564 coding downstream 241578 60694220 ~ 60695905 (+)
G422566 NA non-coding upstream 1900 60433211 ~ 60433863 (+)
G422563 NA non-coding upstream 11924 60423550 ~ 60423839 (+)
G422562 NA non-coding upstream 13163 60422156 ~ 60422600 (+)
G422561 NA non-coding upstream 14119 60421431 ~ 60421644 (+)
G422514 NA non-coding upstream 17351 60331178 ~ 60418412 (+)
G422612 NA non-coding downstream 49410 60502052 ~ 60502319 (+)
G422618 NA non-coding downstream 57042 60509684 ~ 60573995 (+)
G422654 NA non-coding downstream 138829 60591471 ~ 60591691 (+)
G422658 NA non-coding downstream 143973 60596615 ~ 60596844 (+)
G422659 NA non-coding downstream 144381 60597023 ~ 60597372 (+)
G420634 NA other upstream 1491546 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2018987 58411240 ~ 58418268 (+)
G419452 NA other upstream 2536115 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3068426 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3477598 56943838 ~ 56958165 (+)
G423922 NA other downstream 1268895 61721537 ~ 61722024 (+)
G424079 NA other downstream 1652881 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1830510 62283054 ~ 62327772 (+)
G425224 NA other downstream 2592448 63045090 ~ 63051530 (+)

Expression


Co-expression Network