ccl44 (LOC106613702)


Basic Information

Item Value
gene id ccl44
gene name LOC106613702
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60459847 ~ 60462194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603665.2
CATGTCTGTGTttgagggagagcgagggagagagtgaaaaggagggagggagggagaaatataagagacagaaatagaggggAAGGTAACACAGCAGATTACTTCCCTGCCAGGCTCACCATGTTTCTGTTGCAGACTGTGACTGTTATTTCTCTGACTGTCATTCTCCTGGGCTCGGTGGAAGgtaACGGGGTACAGATGCAGAGAGATGTTCAGTGCTGTATGCAGTACTCCCAGGGGAAAGTGCGCACCAAAGACGTGCTGAGGTTTGAGGTACAGACGGAGGGGCCAGACTGCAGTATAAAAGCCATCATACTGTACACCAAGAAGGCGGTGAAGTGTGCTGACCCCAGAGACCGAAAGGTCAAGAGGTTACTGAGGAAGCTGCTCCAGAGGCAGAGGACCAAAGCACATAGGATCATGTGGCTCTACCCTCATGGCAACCTGCCAGTCATGTCGGAGGACAAGAAGGATGGGTGGGATGCCTTCCATGTGGAAtgagtgtgaggttgttgttACCACAGGAGAATTATTGTCATAGGCCAAGTAAACTTCCAGCGGCTTGTCATCCTAACTCAGCCAAGCTTTCTGACTCTCCAGTCGTCTCGTGTCAATATCTCCCTGGGAGTGTGGTGGCTGAGCTGTCATTGCCATACAGTCCATGAGAGGTTTTGATATATAGCTAAATGTATTTTACACTGACTGTCGCTAACTATGCCAAAGTATTATGCTAAGTATTTCTGATTACTCTAGCCCAAGAAACCAGTCTTCACCGTCTATGTATACCTGTTCAATGTATACCTGTTCAATTTCCTAGAGGGCTTGTTCTCTCCTGAAACACAATGTAATGTAGAAAAATGCACTGTCTGTTTAAACACGACATCTGAAGTGGATCTTTTCTAAATAAATGGACCTGAAAGAA
>XM_021603666.2
TGCATGTCTGTGTttgagggagagcgagggagagagtgaaaaggagggagggagggagaaatataagagacagaaatagaggggAAGGTAACACAGCAGATTACTTCCCTGCCAGGCTCACCATGTTTCTGTTGCAGACTGTGACTGTTATTTCTCTGACTGTCATTCTCCTGGGCTCGGTGGAAGgtaACGGGGTACAGATGCAGAGAGATGTTCAGTGCTGTATGCAGTACTCCCAGGGGAAAGTGCGCACCAAAGACGTGCTGAGGTTTGAGGTACAGACGGAGGGGCCAGACTGCAGTATAAAAGCCATCATACTGTACACCAAGAAGGCGGTGAAGTGTGCTGACCCCAGAGACCGAAAGGTCAAGAGGTTACTGAGGAAGCTGCTCCAGAGGCAGAGGACCAAAGCACATAGGATCATGTGGCTCTACCCTCATGGCAACCTGCCAGTCATGTCGGAGGACAAGAAGGATGGGTGGGATGCCTTCCATGTGGAAtgagtgtgagGCCAAGTAAACTTCCAGCGGCTTGTCATCCTAACTCAGCCAAGCTTTCTGACTCTCCAGTCGTCTCGTGTCAATATCTCCCTGGGAGTGTGGTGGCTGAGCTGTCATTGCCATACAGTCCATGAGAGGTTTTGATATATAGCTAAATGTATTTTACACTGACTGTCGCTAACTATGCCAAAGTATTATGCTAAGTATTTCTGATTACTCTAGCCCAAGAAACCAGTCTTCACCGTCTATGTATACCTGTTCAATGTATACCTGTTCAATTTCCTAGAGGGCTTGTTCTCTCCTGAAACACAATGTAATGTAGAAAAATGCACTGTCTGTTTAAACACGACATCTGAAGTGGATCTTTTCTAAATAAATGGACCTGAAAGAA
>XM_021603667.2
GTGCATGTCTGTGTttgagggagagcgagggagagagtgaaaaggagggagggagggagaaatataagagacagaaatagaggggAAGGTAACACAGCAGATTACTTCCCTGCCAGGCTCACCATGTTTCTGTTGCAGACTGTGACTGTTATTTCTCTGACTGTCATTCTCCTGGGCTCGGTGGAAGgtaACGGGGTACAGATGCAGAGAGATGTTCAGTGCTGTATGCAGTACTCCCAGGGGAAAGTGCGCACCAAAGACGTGCTGAGGTTTGAGGTACAGACGGAGGGGCCAGACTGCAGTATAAAAGCCATCATACTGTACACCAAGAAGGCGGTGAAGTGTGCTGACCCCAGAGACCGAAAGGTCAAGAGGTTACTGAGGAAGCTGCTCCAGAGGCAGAGGACCAAAGCACATAGGATCATGTGGCTCTACCCTCATGGCAACCTGCCAGTCATGTCGGAGGACAAGAAGGATGGGTGGGATGCCTTCCATGTGGAAtgagtGCCAAGTAAACTTCCAGCGGCTTGTCATCCTAACTCAGCCAAGCTTTCTGACTCTCCAGTCGTCTCGTGTCAATATCTCCCTGGGAGTGTGGTGGCTGAGCTGTCATTGCCATACAGTCCATGAGAGGTTTTGATATATAGCTAAATGTATTTTACACTGACTGTCGCTAACTATGCCAAAGTATTATGCTAAGTATTTCTGATTACTCTAGCCCAAGAAACCAGTCTTCACCGTCTATGTATACCTGTTCAATGTATACCTGTTCAATTTCCTAGAGGGCTTGTTCTCTCCTGAAACACAATGTAATGTAGAAAAATGCACTGTCTGTTTAAACACGACATCTGAAGTGGATCTTTTCTAAATAAATGGACCTGAAAGAA

Function

NR:

description
PREDICTED: C-C motif chemokine 17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603665.2 False 922 mRNA 0.47 5 60459847 60462191
XM_021603666.2 False 891 mRNA 0.47 5 60459847 60462193
XM_021603667.2 True 887 mRNA 0.47 5 60459847 60462194

Neighbor

gene id symbol gene type direction distance location
LOC118964632 NA coding downstream 33313 60414163 ~ 60426534 (-)
LOC110524214 LOC106613699 coding downstream 60985 60395024 ~ 60398862 (-)
lpl lpl coding downstream 153207 60298204 ~ 60306640 (-)
LOC110524209 LOC106613694 coding downstream 170416 60282374 ~ 60289431 (-)
LOC110524206 ap1m1 coding downstream 325575 60116530 ~ 60134272 (-)
LOC110524218 LOC106613703 coding upstream 9118 60471312 ~ 60476448 (-)
LOC110524219 LOC106613704 coding upstream 47485 60509679 ~ 60513480 (-)
LOC110524222 LOC106613707 coding upstream 143014 60605208 ~ 60626475 (-)
ndufa11 LOC106613708 coding upstream 216504 60678698 ~ 60682883 (-)
cers4a LOC106613711 coding upstream 233709 60695903 ~ 60728972 (-)
G423109 LOC106613701 non-coding downstream 16283 60443339 ~ 60443564 (-)
G423110 NA non-coding downstream 17429 60442213 ~ 60442418 (-)
G423108 NA non-coding downstream 17887 60441716 ~ 60441960 (-)
G423107 LOC106613701 non-coding downstream 18292 60441299 ~ 60441555 (-)
G423102 NA non-coding downstream 23492 60435661 ~ 60436355 (-)
G423151 NA non-coding upstream 39865 60502059 ~ 60502263 (-)
G423154 NA non-coding upstream 42998 60505192 ~ 60507727 (-)
G423155 NA non-coding upstream 43468 60505662 ~ 60566413 (-)
G423180 NA non-coding upstream 94075 60556269 ~ 60575773 (-)
G422347 NA other downstream 358791 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1321590 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1423548 59026103 ~ 59036299 (-)
G420421 NA other downstream 2045704 58413128 ~ 58414143 (-)
G420193 NA other downstream 2345787 58112387 ~ 58114060 (-)
LOC110524239 LOC106573579 other upstream 596800 61058949 ~ 61081864 (-)
G424474 NA other upstream 1154676 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1187773 61649967 ~ 61651775 (-)
G424502 NA other upstream 1196839 61659033 ~ 61659585 (-)
G424649 NA other upstream 1426004 61888198 ~ 61927422 (-)

Expression


Co-expression Network