LOC110522875


Basic Information

Item Value
gene id LOC110522875
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60480168 ~ 60484430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601327.2
tcaggcatttgattgtggcctgtggaatgttctcccactcctcttcaatggctgtgcgaagttgttggatattgCTGGGAACTAGAATACGCTGTcctacacgtcgatccagagcattccaaacattcTCAATGAGTgacgtctggttggcgcccccccttgagttgtgctgtggcggagatctttgtgggctatactcagccttgtctgaggatgCACGACGACAACATTGTCCACCGAGACATGAAAGCAGAGAATGTCTTCTATACCACCAGCTACTGCATCAAGGTGGGAGACCTTGGCTTCAGCATAGTGACTGGTCCAACCGAGGTCCTCACCACATTCTGTGGTTCCACATCCTACGCCGCTCCAGAGCTCTTCAAAGAGAAAGGCTACATGGGTCGTTACATGGACATCTGGGCATTGGGCATCCTCCTCTACTTCATGGTCACCCAGGTCCTGTGCTTGGAGGAGCAGGAGGTGAAGTTGGCCTTTTCTGGCCTGGGCTTCATGGCGGCCCATCTGCAGAGCAACACCTAACACAGACAATTGCAACCCCCTGACGGGGACCTACCGTATCCTCCTCCACCACATCCAGAAGAGGAGGTCCGTGGAGGATGTGGGATATGCAGGCCTCTACCCTAAGGACTTTGTCACTACCAAGAGATGGACGCCACTGCTGTTATGGTCAAGCACAACCCAACTAATGTCTGTGTTATGCTATAGACCATGGTTTCGTAACAGTTTTTGTACCAGGGACTGGCAAGTTATGGATCTTCTCTTAGGATTAAAACAAACACTTTTGGAGGACCACTTACATTGAAATCAAACATTTGAGAACTGAAGTTCTCAGACAACTATCTGAGGGATCAGTTAGCAATATCTCAGAGACCAGTGGTGCTCCATGGacaagacacaaacacacccgTGCAGACATGTGcatactctcactcactcacacacacacaccgctctcTCAGGGATCTGCTGTTGCTTATTCATCGTAGTACAGAGGATAGGTAGATAAATACCACCATCTTGTGctcacattattcattacatttCAGTATGCCTCAGAAATCTGTGATGAAAAGAAACCGTGGTTAAGATTACAGGATCTGGTTTGTAATGTACAGTCCATTAATTCTATTGAGGCTTATGGACTAACAAGGCTTCAGCTTGTTGTGACCGTCACTTGTGACCGTCACTTTACTCAATAGGCCTATGTTCTGTTCAATAGGCTTACAGCAAGAGGCAGACTGAGTGCTATTAATCCTTTGCCTATCTTCCAAGCCTACTTAGTCCAGTGCTTCATCAAAATATAACCGGGGTTGTGCAAGGGCATGGCTAATCTTTCTTTGTTGTGATACAGGAAAAGTGCTTTGTCCAGATATGAATTGTAAGGGAGTCAGGCACCAAGTGTGGGCCCATGTCCTGATATTTTCATTGCTCTA

Function

NR:

description
serine/threonine-protein kinase NIM1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601327.2 True 1454 mRNA 0.47 3 60480168 60484430

Neighbor

gene id symbol gene type direction distance location
LOC110524216 LOC106613701 coding upstream 27526 60435763 ~ 60452642 (+)
LOC110524215 LOC106613700 coding upstream 47845 60427110 ~ 60432323 (+)
hsh2d LOC106613697 coding upstream 69130 60407553 ~ 60411038 (+)
LOC110524213 LOC106613698 coding upstream 72720 60398990 ~ 60407448 (+)
LOC110524211 tpm4 coding upstream 84993 60368391 ~ 60395175 (+)
ctns LOC106613706 coding downstream 50103 60534533 ~ 60543487 (+)
LOC110524221 ranbp3 coding downstream 61751 60546181 ~ 60566583 (+)
LOC110524224 LOC106613709 coding downstream 206043 60666192 ~ 60692763 (+)
LOC110524226 LOC106573564 coding downstream 209790 60694220 ~ 60695905 (+)
LOC110524227 fbn3 coding downstream 286326 60770756 ~ 60861371 (+)
G422570 NA non-coding upstream 35566 60444312 ~ 60444602 (+)
G422566 NA non-coding upstream 46305 60433211 ~ 60433863 (+)
G422563 NA non-coding upstream 56329 60423550 ~ 60423839 (+)
G422562 NA non-coding upstream 57568 60422156 ~ 60422600 (+)
G422561 NA non-coding upstream 58524 60421431 ~ 60421644 (+)
G422612 NA non-coding downstream 17622 60502052 ~ 60502319 (+)
G422618 NA non-coding downstream 25254 60509684 ~ 60573995 (+)
G422654 NA non-coding downstream 107041 60591471 ~ 60591691 (+)
G422658 NA non-coding downstream 112185 60596615 ~ 60596844 (+)
G422659 NA non-coding downstream 112593 60597023 ~ 60597372 (+)
G420634 NA other upstream 1535951 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2063392 58411240 ~ 58418268 (+)
G419452 NA other upstream 2580520 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3112831 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3522003 56943838 ~ 56958165 (+)
G423922 NA other downstream 1237107 61721537 ~ 61722024 (+)
G424079 NA other downstream 1621093 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1798722 62283054 ~ 62327772 (+)
G425224 NA other downstream 2560660 63045090 ~ 63051530 (+)

Expression


Co-expression Network