LOC110524219 (LOC106613704)


Basic Information

Item Value
gene id LOC110524219
gene name LOC106613704
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60509679 ~ 60513480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603672.2
TTATTTGCAGCATGTTCTGCATTGTTGGTGGGTGTAGGCTTTTGTGTTGAGAGGTTGTCAGGACTGTTTATATGTTGACCTTTTGCATGTTTATATCCTTGCCTAATGCTGAATTCATACTTCACTAGCTTTCGGATTAATGCTGTAAACATTCTGTACTTTTGCATTTCTAACTAATAAAAGACACAAGTTTATACAGCTGGCTCGAGAGACGGAGTTTGGCTTTATCTGATTGGTTGTTGATTTATTAGAACATGGTCAGAGTTTCAGCCAAACAAATGATAGCTGGAGAAAACAGCTGAAGACATCTGGATCTGGTTGACTGTTACCAAGAAGGACGTGTTTGTAATCAAGGGCGGACCCCACAGCAGCAGTGACACCATGAGGTTCCAGGCTCTGTTCTTTCTCCTGCTCCTGACATGCATGTATCTCACTCTGGCTCAAGGGTCGTATGAGAACTGCTGCCTGAGGCATGTTACTGGCCTGAAGAAGAGTACCAAGAGGAATGTTGTAAGCTACAGGATACAGGAAACAGATGGAGGCTGCAACATCAAGGccgttgtGTTCATACTGAAGAAAGGGAAGACTGTTTGTGCCAATCCCAGCCACAAATGGGTACAGCATCTGAGGACTGTTGTCGATAAGACTCCAGGGAATGAGGGGATGTAGTTGATCAGTTGCTTCGTTGGAGGATCTTTCAACCAGTGTATGCCAATTTCCAAAAATAGGACAGTCATATCATCCTGTAACTAGAATGTGAACTTCATCATTATATTACTCATTATATTACAGTTTGGCTTAATGAGTTTATATTACATGCTTTTGGGAGGATACCTGAGATTCCATGGTTTAGATGGCTGTTAGCATGAGGTGACTAACCGTGCCTGCTTGTAATGTGCCACGGCAGCTTAGCATTATTGTGTGTGAGGGGcggaggggatggaggggggggttATTCACTATCCTCATGGGTACCGGAAATCCCccaaaagtcctcacaaggatagtcaATTAAGGAACATTTTCCCTCAtggggacatttcccacatccccatgaggacaaaggctattgtaagcttaggggttaggtgtaggttcagggttagggttagggttagggttcaggttagaggttagggaaaataagattttgaatggaaatcaatTTTTGGAGGGGGGTGGGGCAGAATGCATTGAAAAGCTACAATTCCTATTTTGTTAAACCTTgagacactacatgaccaaaagtatgtggacacctgctctagtcaaacatctcattccaaaatcatggcattaatatggagttggtctgccctttgctgctacaacagcctccactctcctgagaaggctttccactttaTGTTGGAAccttgctgcggggacttgctttcattcagccacaagaacaaaTGTGAGGTCGGCATTGAtgatgggcgattaggcctgccTCACAGTcgatgttccaattcatcccaaaggtgttcaatggggttgaggtcagggctctgtgtatgCCAGTcaagttaagatttcccttcactgggactaaggggcctagcccgaaccataacagccccagaccattattcctcctccaccaaactttacagttggcactatgcattgggacaggtagggttttcctggcatccgccaaaccaagattcatccgtcggactgccagatgatgaagcgtgattcatcactccagagagtgCGTTTCCAAAGCTccagtccaatggtggtgagctttacaccactccagctgcttagcattgcacatggtgatcttcggcttgtgtgccagaggcagtttggaactcagtagtgagtggtGTAACCGAGAACAGACAATTTTTAAGCGCTGAGTGCTTcgcattctgtgagcttgtgtggcctaccccTTTACTGCTGAGCCGTttttgctcctagatgtttccacttcacaataacagcacttaaagttgCCCGGGGTAGCTCAAGTAGGGCAGAAATTTcccgaactgacttgttggaaaggtagcattctatgatgccacgttgaaagtcactgagctcttcagtaaggccattctactgccaacgtttgtctttggagattgcatggctgtgtgctccattttatacacttgtcagcaacaggtgtggttgaaatagacGAATCCactttgaaagggtgtccacatactttgtatgtATAGTATATTTTTCTATCAGTACTATGTGTTAAAAGCAATATTTGTATAACTTCACATTTGTAATAAAGCAAAAAATGATAACAAAATGTT
>XM_021603670.2
ACTCATCTTTTCACTGGACTGAGCGAAGAAAAACTGTTCAGTGGCATTCAATTGTGAATCTTGTTCAAATTGTACCTCTTCCCAGCAATTGTAAAACATACCGTGGTTGTCATGCCAGAGGAGGTGTGGCTGATTGAGGTAACAGGGTTGGTAGAGAGGTGAAGGTATTATATAGCAGCTATAAAACAGCCAAGGGAACTCAACGAGGACATTTCTTCTGAGAGACTATCGGACCCCACAGCAGCAGTGACACCATGAGGTTCCAGGCTCTGTTCTTTCTCCTGCTCCTGACATGCATGTATCTCACTCTGGCTCAAGGGTCGTATGAGAACTGCTGCCTGAGGCATGTTACTGGCCTGAAGAAGAGTACCAAGAGGAATGTTGTAAGCTACAGGATACAGGAAACAGATGGAGGCTGCAACATCAAGGccgttgtGTTCATACTGAAGAAAGGGAAGACTGTTTGTGCCAATCCCAGCCACAAATGGGTACAGCATCTGAGGACTGTTGTCGATAAGACTCCAGGGAATGAGGGGATGTAGTTGATCAGTTGCTTCGTTGGAGGATCTTTCAACCAGTGTATGCCAATTTCCAAAAATAGGACAGTCATATCATCCTGTAACTAGAATGTGAACTTCATCATTATATTACTCATTATATTACAGTTTGGCTTAATGAGTTTATATTACATGCTTTTGGGAGGATACCTGAGATTCCATGGTTTAGATGGCTGTTAGCATGAGGTGACTAACCGTGCCTGCTTGTAATGTGCCACGGCAGCTTAGCATTATTGTGTGTGAGGGGcggaggggatggaggggggggttATTCACTATCCTCATGGGTACCGGAAATCCCccaaaagtcctcacaaggatagtcaATTAAGGAACATTTTCCCTCAtggggacatttcccacatccccatgaggacaaaggctattgtaagcttaggggttaggtgtaggttcagggttagggttagggttagggttcaggttagaggttagggaaaataagattttgaatggaaatcaatTTTTGGAGGGGGGTGGGGCAGAATGCATTGAAAAGCTACAATTCCTATTTTGTTAAACCTTgagacactacatgaccaaaagtatgtggacacctgctctagtcaaacatctcattccaaaatcatggcattaatatggagttggtctgccctttgctgctacaacagcctccactctcctgagaaggctttccactttaTGTTGGAAccttgctgcggggacttgctttcattcagccacaagaacaaaTGTGAGGTCGGCATTGAtgatgggcgattaggcctgccTCACAGTcgatgttccaattcatcccaaaggtgttcaatggggttgaggtcagggctctgtgtatgCCAGTcaagttaagatttcccttcactgggactaaggggcctagcccgaaccataacagccccagaccattattcctcctccaccaaactttacagttggcactatgcattgggacaggtagggttttcctggcatccgccaaaccaagattcatccgtcggactgccagatgatgaagcgtgattcatcactccagagagtgCGTTTCCAAAGCTccagtccaatggtggtgagctttacaccactccagctgcttagcattgcacatggtgatcttcggcttgtgtgccagaggcagtttggaactcagtagtgagtggtGTAACCGAGAACAGACAATTTTTAAGCGCTGAGTGCTTcgcattctgtgagcttgtgtggcctaccccTTTACTGCTGAGCCGTttttgctcctagatgtttccacttcacaataacagcacttaaagttgCCCGGGGTAGCTCAAGTAGGGCAGAAATTTcccgaactgacttgttggaaaggtagcattctatgatgccacgttgaaagtcactgagctcttcagtaaggccattctactgccaacgtttgtctttggagattgcatggctgtgtgctccattttatacacttgtcagcaacaggtgtggttgaaatagacGAATCCactttgaaagggtgtccacatactttgtatgtATAGTATATTTTTCTATCAGTACTATGTGTTAAAAGCAATATTTGTATAACTTCACATTTGTAATAAAGCAAAAAATGATAACAAAATGTT
>TU479425
CTGTTCTTGTAGCGGACCCCACAGCAGCAGTGACACCATGAGGTTCCAGGCTCTGTTCTTTCTCCTGCTCCTGACATGCATGTATCTCACTCTGGCTCAAGGGTCGTATGAGAACTGCTGCCTGAGGCATGTTACTGGCCTGAAGAAGAGTACCAAGAGGAATGTTGTAAGCTACAGGATACAGGAAACAGATGGAGGCTGCAACATCAAGGccgttgtGTTCATACTGAAGAAAGGGAAGACTGTTTGTGCCAATCCCAGCCACAAATGGGTACAGCATCTGAGGACTGTTGTCGATAAGACTCCAGGGAATGAGGGGATGTAGTTGATCAGTTGCTTCGTTGGAGGATCTTTCAACCAGTGTATGCCAATTTCCAAAAATAGGACAGTCATATCATCCTGTAACTAGAATGTGAACTTCATCATTATATTACTCATTATATTACAGTTTGGCTTAATGAGTTTATATTACATGCTTTTGGGAGGATACCTGAGATTCCATGGTTTAGATGGCTGTTAGCATGAGGTGACTAACCGTGCCTGCTTGTAATGTGCCACGGCAGCTTAGCATTATTGTGTGTGAGGGGcggaggggatggaggggggggttATTCACTATCCTCATGGGTACCGGAAATCCCccaaaagtcctcacaaggatagtcaATTAAGGAACATTTTCCCTCAtggggacatttcccacatccccatgaggacaaaggctattgtaagcttaggggttaggtgtaggttcagggttagggttagggttagggttcaggttagaggttagggaaaataagattttgaatggaaatcaatTTTTGGAGGGGGGTGGGGCAGAATGCATTGAAAAGCTACAATTCCTATTTTGTTAAACCTTgagacactacatgaccaaaagtatgtggacacctgctctagtcaaacatctcattccaaaatcatggcattaatatggagttggtctgccctttgctgctacaacagcctccactctcctgagaaggctttccactttaTGTTGGAAccttgctgcggggacttgctttcattcagccacaagaacaaaTGTGAGGTCGGCATTGAtgatgggcgattaggcctgccTCACAGTcgatgttccaattcatcccaaaggtgttcaatggggttgaggtcagggctctgtgtatgCCAGTcaagttaagatttcccttcactgggactaaggggcctagcccgaaccataacagccccagaccattattcctcctccaccaaactttacagttggcactatgcattgggacaggtagggttttcctggcatccgccaaaccaagattcatccgtcggactgccagatgatgaagcgtgattcatcactccagagagtgCGTTTCCAAAGCTccagtccaatggtggtgagctttacaccactccagctgcttagcattgcacatggtgatcttcggcttgtgtgccagaggcagtttggaactcagtagtgagtggtGTAACCGAGAACAGACAATTTTTAAGCGCTGAGTGCTTcgcattctgtgagcttgtgtggcctaccccTTTACTGCTGAGCCGTttttgctcctagatgtttccacttcacaataacagcacttaaagttgCCCGGGGTAGCTCAAGTAGGGCAGAAATTTcccgaactgacttgttggaaaggtagcattctatgatgccacgttgaaagtcactgagctcttcagtaaggccattctactgccaacgtttgtctttggagattgcatggctgtgtgctccattttatacacttgtcagcaacaggtgtggttgaaatagacGAATCCactttgaaagggtgtccacatactttgtatgtATAGTATATTTTTCTATCAGTACTATGTGTTAAAAGCAATATTTGTATAACTTCACATTTGTAATAAAGCAAAAAATGATAACAAAA
>TU479426
AGCTGAAGACATCTGGATCTGGTTGACTGTTACCAAGAAGGACGTGTTTGTAATCAAGGGCGGACCCCACAGCAGCAGTGACACCATGAGGTTCCAGGCTCTGTTCTTTCTCCTGCTCCTGACATGCATGTATCTCACTCTGGCTCAAGGGTCGTATGAGAACTGCTGCCTGAGGCATGTTACTGGCCTGAAGAAGAGTACCAAGAGGAATGTTGTAAGCTACAGGATACAGGAAACAGATGGAGGCTGCAACATCAAGGccgttgtGTTCATACTGAAGAAAGGGAAGACTGTTTGTGCCAATCCCAGCCACAAATGGGTACAGCATCTGAGGACTGTTGTCGATAAGACTCCAGGGAATGAGGGGATGTAGTTGATCAGTTGCTTCGTTGGAGGATCTTTCAACCAGTGTATGCCAATTTCCAAAAATAGGACAGTCATATCATCCTGTAACTAGAATGTGAACTTCATCATTATATTACTCATTATATTACAGTTTGGCTTAATGAGTTTATATTACATGCTTTTGGGAGGATACCTGAGATTCCATGGTTTAGATGGCTGTTAGCATGAGGTGACTAACCGTGCCTGCTTGTAATGTGCCACGGCAGCTTAGCATTATTGTGTGTGAGGGGcggaggggatggaggggggggttATTCACTATCCTCATGGGTACCGGAAATCCCccaaaagtcctcacaaggatagtcaATTAAGGAACATTTTCCCTCAtggggacatttcccacatccccatgaggacaaaggctattgtaagcttaggggttaggtgtaggttcagggttagggttagggttagggttcaggttagaggttagggaaaataagattttgaatggaaatcaatTTTTGGAGGGGGGTGGGGCAGAATGCATTGAAAAGCTACAATTCCTATTTTGTTAAACCTTgagacactacatgaccaaaagtatgtggacacctgctctagtcaaacatctcattccaaaatcatggcattaatatggagttggtctgccctttgctgctacaacagcctccactctcctgagaaggctttccactttaTGTTGGAAccttgctgcggggacttgctttcattcagccacaagaacaaaTGTGAGGTCGGCATTGAtgatgggcgattaggcctgccTCACAGTcgatgttccaattcatcccaaaggtgttcaatggggttgaggtcagggctctgtgtatgCCAGTcaagttaagatttcccttcactgggactaaggggcctagcccgaaccataacagccccagaccattattcctcctccaccaaactttacagttggcactatgcattgggacaggtagggttttcctggcatccgccaaaccaagattcatccgtcggactgccagatgatgaagcgtgattcatcactccagagagtgCGTTTCCAAAGCTccagtccaatggtggtgagctttacaccactccagctgcttagcattgcacatggtgatcttcggcttgtgtgccagaggcagtttggaactcagtagtgagtggtGTAACCGAGAACAGACAATTTTTAAGCGCTGAGTGCTTcgcattctgtgagcttgtgtggcctaccccTTTACTGCTGAGCCGTttttgctcctagatgtttccacttcacaataacagcacttaaagttgCCCGGGGTAGCTCAAGTAGGGCAGAAATTTcccgaactgacttgttggaaaggtagcattctatgatgccacgttgaaagtcactgagctcttcagtaaggccattctactgccaacgtttgtctttggagattgcatggctgtgtgctccattttatacacttgtcagcaacaggtgtggttgaaatagacGAATCCactttgaaagggtgtccacatactttgtatgtATAGTATATTTTTCTATCAGTACTATGTGTTAAAAGCAATATTTGTATAACTTCACATTTGTAATAAAGCAAAAAATGATAACAAAA
>TU479427
ACTGGACTGAGCGAAGAAAAACTGTTCAGTGGCATTCAATTGTGAATCTTGTTCAAATTGTACCTCTTCCCAGCAATTGTAAAACATACCGTGGTTGTCATGCCAGAGGAGGTGTGGCTGATTGAGGTAACAGGGTTGGTAGAGAGGTGAAGGTATTATATAGCAGCTATAAAACAGCCAAGGGAACTCAACGAGGACATTTCTTCTGAGAGACTATCGGACCCCACAGCAGCAGTGACACCATGAGGTTCCAGGCTCTGTTCTTTCTCCTGCTCCTGACATGCATGTATCTCACTCTGGCTCAAGGGTCGTATGAGAACTGCTGCCTGAGGCATGTTACTGGCCTGAAGAAGAGTACCAAGAGGAATGTTGTAAGCTACAGGATACAGGAAACAGATGGAGGCTGCAACATCAAGGccgttgtGTTCATACTGAAGAAAGGGAAGACTGTTTGTGCCAATCCCAGCCACAAATGGGTACAGCATCTGAGGACTGTTGTCGATAAGACTCCAGGGAATGAGGGGATGTAGTTGATCAGTTGCTTCGTTGGAGGATCTTTCAACCAGTGTATGCCAATTTCCAAAAATAGGACAGTCATATCATCCTGTAACTAGAATGTGAACTTCATCATTATATTACTCATTATATTACAGTTTGGCTTAATGAGTTTATATTACATGCTTTTGGGAGGATACCTGAGATTCCATGGTTTAGATGGCTGTTAGCATGAGGTGACTAACCGTGCCTGCTTGTAATGTGCCACGGCAGCTTAGCATTATTGTGTGTGAGGGGcggaggggatggaggggggggttATTCACTATCCTCATGGGTACCGGAAATCCCccaaaagtcctcacaaggatagtcaATTAAGGAACATTTTCCCTCAtggggacatttcccacatccccatgaggacaaaggctattgtaagcttaggggttaggtgtaggttcagggttagggttagggttagggttcaggttagaggttagggaaaataagattttgaatggaaatcaatTTTTGGAGGGGGGTGGGGCAGAATGCATTGAAAAGCTACAATTCCTATTTTGTTAAACCTTgagacactacatgaccaaaagtatgtggacacctgctctagtcaaacatctcattccaaaatcatggcattaatatggagttggtctgccctttgctgctacaacagcctccactctcctgagaaggctttccactttaTGTTGGAAccttgctgcggggacttgctttcattcagccacaagaacaaaTGTGAGGTCGGCATTGAtgatgggcgattaggcctgccTCACAGTcgatgttccaattcatcccaaaggtgttcaatggggttgaggtcagggctctgtgtatgCCAGTcaagttaagatttcccttcactgggactaaggggcctagcccgaaccataacagccccagaccattattcctcctccaccaaactttacagttggcactatgcattgggacaggtagggttttcctggcatccgccaaaccaagattcatccgtcggactgccagatgatgaagcgtgattcatcactccagagagtgCGTTTCCAAAGCTccagtccaatggtggtgagctttacaccactccagctgcttagcattgcacatggtgatcttcggcttgtgtgccagaggcagtttggaactcagtagtgagtggtGTAACCGAGAACAGACAATTTTTAAGCGCTGAGTGCTTcgcattctgtgagcttgtgtggcctaccccTTTACTGCTGAGCCGTttttgctcctagatgtttccacttcacaataacagcacttaaagttgCCCGGGGTAGCTCAAGTAGGGCAGAAATTTcccgaactgacttgttggaaaggtagcattctatgatgccacgttgaaagtcactgagctcttcagtaaggccattctactgccaacgtttgtctttggagattgcatggctgtgtgctccattttatacacttgtcagcaacaggtgtggttgaaatagacGAATCCactttgaaagggtgtccacatactttgtatgtATAGTATATTTTTCTATCAGTACTATGTGTTAAAAGCAATATTTGTATAACTTCACATTTGTAATAAAGCAAAAAATGATAACAAAA

Function

NR:

description
C-C motif chemokine 25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603672.2 False 2294 mRNA 0.44 5 60509679 60513235
XM_021603670.2 False 2167 mRNA 0.45 5 60509679 60513480
TU479425 False 1946 lncRNA 0.46 4 60509683 60512739
TU479426 False 1994 lncRNA 0.46 5 60509683 60512939
TU479427 True 2151 lncRNA 0.45 5 60509683 60513468

Neighbor

gene id symbol gene type direction distance location
LOC110524218 LOC106613703 coding downstream 33231 60471312 ~ 60476448 (-)
ccl44 LOC106613702 coding downstream 47485 60459847 ~ 60462194 (-)
LOC118964632 NA coding downstream 83145 60414163 ~ 60426534 (-)
LOC110524214 LOC106613699 coding downstream 110817 60395024 ~ 60398862 (-)
lpl lpl coding downstream 203039 60298204 ~ 60306640 (-)
LOC110524222 LOC106613707 coding upstream 91728 60605208 ~ 60626475 (-)
ndufa11 LOC106613708 coding upstream 165218 60678698 ~ 60682883 (-)
cers4a LOC106613711 coding upstream 182423 60695903 ~ 60728972 (-)
LOC110524228 LOC106573568 coding upstream 347967 60861447 ~ 60884008 (-)
timm44 LOC106613715 coding upstream 388918 60902398 ~ 60914281 (-)
G423154 NA non-coding downstream 1952 60505192 ~ 60507727 (-)
G423151 NA non-coding downstream 7416 60502059 ~ 60502263 (-)
G423109 LOC106613701 non-coding downstream 66115 60443339 ~ 60443564 (-)
G423110 NA non-coding downstream 67261 60442213 ~ 60442418 (-)
G423108 NA non-coding downstream 67719 60441716 ~ 60441960 (-)
G423180 NA non-coding upstream 42789 60556269 ~ 60575773 (-)
G423200 NA non-coding upstream 79135 60592615 ~ 60592825 (-)
G423202 NA non-coding upstream 80423 60593903 ~ 60594197 (-)
G423205 NA non-coding upstream 82535 60596015 ~ 60596282 (-)
G423230 NA non-coding upstream 113909 60627389 ~ 60627595 (-)
G422347 NA other downstream 408623 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1371422 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1473380 59026103 ~ 59036299 (-)
G420421 NA other downstream 2095536 58413128 ~ 58414143 (-)
G420193 NA other downstream 2395619 58112387 ~ 58114060 (-)
LOC110524239 LOC106573579 other upstream 545514 61058949 ~ 61081864 (-)
G424474 NA other upstream 1103390 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1136487 61649967 ~ 61651775 (-)
G424502 NA other upstream 1145553 61659033 ~ 61659585 (-)
G424649 NA other upstream 1374718 61888198 ~ 61927422 (-)

Expression


Co-expression Network