LOC110524221 (ranbp3)


Basic Information

Item Value
gene id LOC110524221
gene name ranbp3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60546181 ~ 60566583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603674.2
TCTAGTGTTGGTAACATTTTGTTAGCCCAGCCATACACGCATGTCTACCGCGGAGTATTGTGGGTGTCAGTGAGGAAGTAAAATGGCGGACCTGGCAAACGAAGAGAAGCCTGCCATAgccccacctgtgtttgtgttcCAGGAAGATAAAGCACAGAAGAGATCAGCAGAAGGGTCCAGTGCTGAGGATGGAGAAGACTCTGATAAAGATGAGAGTAGTTACTGTCCCCCGGCCAAGAGAGAAAGAACATCATCACTAACACAGTTCCCACCCGCACATTCAGTTTCTAAGAACAATGTGTTCATGCCATCCAGTTTCTGTCAGTCCCCGTCAGGAAATAATTCAGATTCAGAACCTGAGGAGAAGACTGTTGGGTTTCGCTTGAAGCCTCCCACCCTGATCCATGGACAGGCTCCTCGTACAGGTGTCCCGAGCCAGAAGCCCAAGGAGCAGCAGCGCAGCGTACTACGACCCGCAGTACTGCAGGCCCCTCCGCCTAGCAAATCACTAACCCTGACCGGTTTGAACAGTGGTACGAATGGAGTGAACAGATTGTCCGAGGGTCTGCCAGTCACCCAGAACAACACAGAGAACTGTGATGGCTCCACAGACAATATGGCCAAGTCACAGGAGAAGAAAAGCGAGAGCGGTGAGAGCAGGAATATAGAGAGAACAGATCCTCCTGTGGAATCCACATTTGTATTTGGTCAGAATGTCAGAGACAGAGCCAAGGTTGAGGGAAGCAGTGAAAAGAAAGTCTCTCTGTCAGCAGAATCAGGGGAAACCAATTATTTCCTACAGTACAGAAGCACTCCTGGCTTACAGAAGGCTGAGAACAACACTGACGACGGGGCTAAGTTTGTGTTTGGACAGAACATGTCGGATCGTGTCCTGAGTCCGCTGAAATGTGAGCAGGCAGCAGAGAGCAGCAGAGATCCCCCTGCCACCCCGCCATGTGAGCCACCCTCACTGGTCAGCAGCCCCGACAAAGATACCAATGTGACAGAGTCTTTGGAGGAGTCGGCAGCGGCCTACACCAAAGCCACAGCCAAGAAGTGCTTGTTAGAGAAGGTAGAGGTCAGAACTGGAGAGGAGTCGGAGAGTAATGTACTACAGGTCCAATGCAAGTTGTTTGTGTTTGACAAAGCTTCCCAGTCTTGggtggagagaggcagaggactACTAAGGCTTAATGATATGGCCTCCACAGAGGAGGGATCATTACAGTCCAGGCTAGTGATGAGGACCCAGGGCAGTTTGcgtctgatcctcaacaccaagctgtgGCCCCAAATGCAGACAGACAAAGCCAGCGAGAAGAGCGTCCGCATCACAGCCATGGACACTGAGGACCAGGGGGTCAAGGTCTTCCTCATATCGGCGAGCTCTAAGGACACGGGTCAGCTGTACGCAGCGCTGCATCACCGTATCCTGGCACTGCGGAGCCGCTCAGACCAGGAGCCAGAGCCCCGGGTCCCCATTCCAGACGGCCACATCcctcacccccagtctaacgagGAGGATAGTGATGAGGACGAATCGCTCACACCCACTGCCAACATCGCAGaggGTCCAGAGGTCCAGGCCAGCGGGAGTGGGTCCTCATAGCGCCTGCCCCCCTCCACACGCTGCAGTCAGGACCCCTACAGGCACCTCAGTCCAGCATTTCCCCAATGGTCAGAGGTCACAGTGGAGTACCAGGAAGGATCCTATGCAGGTGCTACTAACTTAACTCTGTGCAGTTCAGTCTCTCTGCATTTGCAGTATATCCGGGATGGATggtctttttgtttgtttttttattttcgtTTTTTTAACCTATAgaactgaaaaatatatattttttggagtTTGTGAATTGTCGCTCATCATATTGATGAGTGAGACGTTGCAAGACGGAATGAGAAAGCGGTTTTCTTCTCTCGCCGATGTAAGTACATTCTAAAGAGCTTGCCGTTAAAAGTGGGACCTCTTTATCCACCTTGCAAGAAAACAGACCTCAGGCACTTCAAATCCAGTGGGGCTTGTATTTTGTTCAGAGAGGTAAAGATCTAGTTGCCTAGCAAATAATAGTTTATAAAGTCTTCTTTCAGAGTTGTGTCTGAACTCTCCaagttttattttgtattttaagtCCGTCGATACCGCCTTTGGCCACTTAGTTTTTTAGTCTGTAGTCAACATTATAAATTATTTTTGACCACAAATCATTTGAAATCGAAGCCCTTGTGCAAACACCTGCTTTGACGTAAATTATTTAATAAAGAATTCCATTTAATAATGGAGTTGACCTGTGTTCATTattatgatgattattattattgataGTTGATATATCGACTTTGATTTTGAAGTTCATTTGAAAATGAACCCATTTTGCAAATAAGCTAGCTGGATTTGATAGTTTTACAGCAGGTTTTTTTCCCATGACCCCAAAATTGTCCCTAAATATAGATGGTAGATGTGTTTGTTTCAAAAAGATAAAGCATTTTTAGATGGATCTGAAAAGATATCATCTTCCCAAATATATATTGAATAAACCAATTTTATTAGTTGTTTACAATTGTTTATTTAGTTTGCTTTAAATAAGTTACACAGACATTGTTTATAACAACCTCGATCATTGTGAACATATTTTTCCTATGTTTTTTCACACCATGAGAAAGGTCAATATAATAACTTCTAGGTTTGGGTGTTGGCAGTTGGATTCTCCGAACATGTCGTTATTTGCATCTATCCTAAATGGGTTTGACCTCAAAACCCTACAAAATGCACATATACTCTCAGAACAACTAATGCTGCCATTTTAATTCAAAGAGCTATAGGCATTGGAACAGGTGGTTCTACACGCACATGATTGGAAGACTACAAGTACATTGTTTCTCACCAATCGTCTGGGTGCTGAGCCCTCTTTATTCCACTGTTAATCGGTGGCTTTGGTTTGGTGTATTTAAAACGGATCCCCTATGAGAATAGATGACTGCAGTTATATTTCCTTCAGTGAAGTGTGGCTCCTCTTGTTTTAAGCCTTTCTTCATATCAGTGGAATTAGTCATATCTCTAAACTGTTGTATTATAGTGTCATCCTTTTTCATGTACTACAAGCCTTTCatgtgaaaatatgtatttttaacaCAAAAAAAGCACACtttgaaaactgaaaaaaaaaacaaaaaaaaaacaggcaagTAGAAATGTTTGTGGTTAAAATGTATATATCCCGTAATGTATATTATTGAGCAGCCTttaagtgtaaaaaaaaataaaaaaggatgCCCCTCCTTA

Function

symbol description
ranbp3 Enables R-SMAD binding activity and small GTPase binding activity. Predicted to be involved in protein export from nucleus. Located in nucleoplasm.

NR:

description
ran-binding protein 3-like isoform X1

GO: NA

KEGG:

id description
K15304 RANBP3; Ran-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603674.2 True 3286 mRNA 0.44 17 60546181 60566583

Neighbor

gene id symbol gene type direction distance location
ctns LOC106613706 coding upstream 2694 60534533 ~ 60543487 (+)
LOC110522875 NA coding upstream 61751 60480168 ~ 60484430 (+)
LOC110524216 LOC106613701 coding upstream 93539 60435763 ~ 60452642 (+)
LOC110524215 LOC106613700 coding upstream 113858 60427110 ~ 60432323 (+)
hsh2d LOC106613697 coding upstream 135143 60407553 ~ 60411038 (+)
LOC110524224 LOC106613709 coding downstream 123890 60666192 ~ 60692763 (+)
LOC110524226 LOC106573564 coding downstream 127637 60694220 ~ 60695905 (+)
LOC110524227 fbn3 coding downstream 204173 60770756 ~ 60861371 (+)
LOC110524234 LOC106613716 coding downstream 372747 60939330 ~ 60942382 (+)
LOC118964633 polr2e coding downstream 510921 61077504 ~ 61081007 (+)
G422612 NA non-coding upstream 43862 60502052 ~ 60502319 (+)
G422570 NA non-coding upstream 101579 60444312 ~ 60444602 (+)
G422566 NA non-coding upstream 112318 60433211 ~ 60433863 (+)
G422563 NA non-coding upstream 122342 60423550 ~ 60423839 (+)
G422562 NA non-coding upstream 123581 60422156 ~ 60422600 (+)
G422654 NA non-coding downstream 24888 60591471 ~ 60591691 (+)
G422658 NA non-coding downstream 30032 60596615 ~ 60596844 (+)
G422659 NA non-coding downstream 30440 60597023 ~ 60597372 (+)
G422674 NA non-coding downstream 58907 60625490 ~ 60625880 (+)
G422675 NA non-coding downstream 59370 60625953 ~ 60626221 (+)
G420634 NA other upstream 1601964 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2129405 58411240 ~ 58418268 (+)
G419452 NA other upstream 2646533 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3178844 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3588016 56943838 ~ 56958165 (+)
G423922 NA other downstream 1154954 61721537 ~ 61722024 (+)
G424079 NA other downstream 1538940 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1716569 62283054 ~ 62327772 (+)
G425224 NA other downstream 2478507 63045090 ~ 63051530 (+)

Expression


Co-expression Network