LOC110524222 (LOC106613707)


Basic Information

Item Value
gene id LOC110524222
gene name LOC106613707
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60605208 ~ 60626475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603676.2
GCGCTCTGATAGGAGCAGGCTCGAGCCAAGCAGGAGAGTACTACTACATTACACTGTACATCAACAAAAGAGGATACTTTGAACTTTTCCAGAAGGAACATTGCTTCAGtgtctgcctgtttctctctctctcggtgatTGACATGTAGCAGCTGCCACACTTACAATCAGCGGGGCTCCCACTTAGTCGGGGCACTCAGTATCTCTGACACTCGGTATCTCTGAAGTTTCCATCACTGGAGCGCCGAGATTCAACGCTGgagttattctctctctctctgtctgtgagtgAGGACGGAGCTGGAATTAACTCTCAAGGACCCAAAGGAGGATACACCTTTCATGACGCACATTGATATAATATTTGTTTCAACCTTCATTGATGTTCCATATGAATGGAAAACTTTGGAGGGTTACTGGAAAACCTATACTAACATTACGAGGTCTGGAAGAGCGTATCATTAATCAATTATGATCCTCTTTTCCCTCACTTTTCTGCAGTGTTGAAGACATCTGTGGGGCGAACAGCTCAGTCAAGCTCTCCTGGAACATCTCGTATTGTTCAGAGATTGTTGTGCTATAATCTAAACATAGGGAAATGGACAGACTGAACTCATCTGGATCTTGGAGTTTTTTTAAAAGTACTCTCATGAGATTTGACCATATTTCAGTCCTGCGTAAATAGCATGATGTTTATTTAACAACGCACTGCAGGAGATTTCTAGAGAATTGATGTTGTTTTCCACGTTTGCTTTTCTTTGAAACACAGTGTTGGTGTATGGGAGCTGTGGACTGATTATTTATTACCATAAGAGGTGCTGGATTTCCAGGGCTGGTTCTCTCTCGGGGAGTCTGTCAGGTCTCCTTCAGCATTCTGACAGTCTGGCTGTGTGTGAAGGGGGGGGAAGAGTCATCTGGAGGGAACAACTCTACACCTCAGGCATTGTGTTTTTTATACCTTTACAAGACTGTATCTGACCTAACACCTTGGCTTTACTAAGGCACTCTGAGCACCTGGAGGTAAAACTATGGGGATTCTGGGCTTCTTCCTCCACCAGCGGAGCCTCGGGATGTGTGACGACGGTCTTCAGCAGATGCACAGACGCAGCAGCAGCCTGGTAGTCCTGAGGGAAAGCCCCGCTATTCTCTGACTCTGACCACCGAGTTGGACTGCTTGACCACTGGGCTGAAGGGAGAGCTGCTAcgactctctcctctactctgcctCGCCTGAGCGGAGGTCAAGCGAAGAGTTAGACACGCAGACGAGTCTGGATAAGCCGGGCGAACGAGTGTCAATGCTCCTACTTATTCTACGATGAAGTTATGGAAGTGCGCCGCCATCGCCTTGACTCTCTGTGGAGCAGCACTGTCCCTCTTCCTCACTCGAATCATGGTTCCCACGCCACCGCATCACATCCCCTCCTGGTACACGTCTTCGTCGCGGACGTCCTTGTCCTCCAACTCCTCCCTGATCGGCGGCCGTCATCGCAAAGCGCGGTCGGTGGAAGGCGTTGGCAACATTTTGACAGAATTCATGCACATGTTCCAGAGCTTCACAGAGGGGGAGCTGAAGCAGATGATCGGGACTCTGGTGGAGAAGAAGGCACGGCAGGAGGCCAGGCAGGAGGCCAGGCAGAGCAAAAGGACTAAACGGGCTAAGAAAGCATCAAAGCCATGTTCCCTGCGGGAGGTGGAAGTGACTGTCAGTGAGCTGGGTCTGGGCTACCACAGTGATGAAACGCTGCTCTTCAGGTACTGCAGCGGGAACTGTAAAGCTAGCCGACGCAACTACGACGTCATACTGAAGAAATGGACGAGGAAAGGCATCTCAAAGAGGGAGAAGAGCCCGTGCTGCCGGCCCAAGGAGTACGATGACATTTCCTTCCTGGACAACAATAACAGATACAAGACGCTCCATAACTTTTCTGCTCTGGCCTGTGGCTGTGTATAACGCCTCTATAGCCATTTTGATTTCCCAGATACTGTGTCGAACATGGGAAAcgcaacaactactgctacaaaaTCAAAAACAGGAGTACACAAGAATCGATCCCTACAGTACAATGCCAGGGAATACGGACATTTAAACTACTACTATTTAAGACTGTTaattttgtgtttgtttttaaaAGACATCAGCAAACGTCTGTTTTGCTTTCCTTGCCTTTCATGGGATACTTCTCTGTCGGTTGTGAGGGTAATATATTATATGACCTATGTGTCATCATGTGGCAATAACAGTTACTGCAATGATTTGCTGCTTGATTGTGGACTATGGAGCAATGGCTCCATTACCTACATGTGTACAAAACACCAGCTGAGGTATAACTAGTGCATGCAGTATTGCCAGTCTGGTCTGATACCACACTTGTAAAACATTTTCAGAAACGAGTTTGTAGGAGTGTGTTCATGGAAAATAATAGAATAAGCTAGCGAATGCAATATGAAGCTTCCACAGTAGGCTTCCCCACAACGTCTTGATCTGCACCATTAATAAGGCATGAGATATCACTAAGGCAAGTCCAATGGAGCAGCAACAACAGTACAGGAGACTAGGAAAGACGAGAGGGCCTGGAGAAACATGGCTTCGCACAATATATAGTGTGTCATTCCTTCATATCACCACCGGTAATGACCTAAATAATGAAATCTCCAGCCTTTATCAGTAACCATGAAAATCTACCTCATTTATGTCGAACAATAATGGAAAACAACACCCAGTATAAAATAACCGTTAAATGTTCTCCTACTGCTTCCTCTGTATTCATCGCTAGAAACAGACTGAAATAAGATATTTTAGTAGTAAATACACTAATGACTTGTATTGGCATAAGAGGTTGCAGGGTAGAAAAACAACCACAGCCATATGCGTGTTGCATGCATTCTAAATGGAGCCTGTATGGGTGATTTAATCTTAATGACAGCAGCTTGTAAATCAAATGGAATGGCTATGGCTGTATAAGCCCTTTCCCGGAAAACAGAAATCCAACAGAAAAACAACATGCTATCAGAAATCCCTATCCTTCTGCAGCAAGATCACTATAAACTCATCAAATACAACCTAGATGGTAGAGTAATGCAGTCTTGTTTGATCATCTAGGCAGAGTGGTGCATTTACTGGGTGACTACTGCATCGTAAACGTGACTGCGAGAGGGATTGTGCTTCAGTCTTACCCTGAATTAGCCTCCACAAATCCATACCATTTGTCCAAATCCCATAATAGACTACCCTAATCCACTTACCTCCTTTTTAACTGACTTGGCCAAAAGCACTGAGCACAAAATAGAGAAATGCAAGCCACTCTGCAGCGCTAACAGCTATTTTTAGTCACTACATGATTAGAGAACACTGGAGACCTTTTGAATTAACCACACATTTGATGTTACCAGGTTTGATAGCCATACATGTTTCGTTCAACagtcattttgaaaacaaaatagaAATCTCTCTCTTAGATGAATTGTGGCCAAATATACTTAGAATAAATAACCTTATCGTAAAACACATTGAACAGGTTCAAGAGcaagacaaaaaaaactaaaatgacGAGTTCAGAAACAATCTTTCATACTCGAAAACTGTAAACAAATCATTTTAGACTGAGAGCTGCATCGAAATGGTAACTTCATCCCAATGAGCTATTTCACCTGAGCATCTATAGTATAGTGAGAGGTACAGTAAGGTTTAAGTCTGAAACCAGTGGAGATACCTCTTAAGTTAAAACCAATCATATAGTTAGAGCAGAAAGTTAATTAAAGGCCCATGCTGGCGTTAAGCTAAGAAAACAGGCCTCTCCAGCCCAGGACCATAATAGCCTCAAGTCTAAATGTGCTTAAAAACCAAAGTATTCCTCCCTTTCTGAATAATCAGTACACAGACACTTGCTGTCCAGATTAGCTGTAGACTGCTCCTTGCATGTAGAGAAATTAGTATATCTCTGGCATGTTACAATGGTCCACATTGTTGAGGACGTCTCAATCAAATAATTAAAGGGATAgatcacccaaattacaaaaggACACGCTGGTTTCCTTAAACCTGTAAGCAGTGTGTTGACAAGGTACATATGACAgcacagcaatccatgctttgttTCCTAATGTTTCCTAATGCAAATGGCACAAATTCCATTCAAGTCATGTGACAAATATTAACATTTTCCAGGTATCATGTTAAAATCATCTAAGTGgctttgttgagcttcacaatcaaTTTCAGATACTTTCGAATTATTTGGACATAATGCGCAAAAACGGCTTACatcggtcccatgacttgaatgggatttgtggcacaaatgctaaaacgttagcatttggaaacagggccagggaaactaaaccaaagcatggattgctgtcataccttgtccatagactgcttacaggttaaggaaaccaatgtttaattttgtaatttgggtgaactatccctttaagtctTTTTTGAAGGACAAAAATTGTAATTTATTTTTGCCTTTTCAAATGGACAATTTAAGAGAAAAGAGCAGCTAGAAAAACAAATTGCTGTCTTAATGTTGATGATATATACTATATGTATTTGTCGTTATATATTTTCATAACCCTTATATTTGCCATCACGAATTACTAAGTCTATTCAGCactataatacagtatatctatGGGTTGAAATTCCCTCAGGTTTCCTTAGTTTCCTCTCGTTACCTCCCTTGAACTCCCTCTCAAAATGGGAGGGAAACATTTGGGAAATGACAAACACCCTTCAGCTCTGGCATTGTTGGACTACGTTGACCAACTGCAGTAAAGTTGATGCAATGCATCTGTATTATAGATCATGTATATTTATTGGAGTGTAAGTTATGGTTTATTTATTTAGATAGCATCATCGAAAAAGAGAAATATGTTTATTTATTGAACTATTGGTGCCAAAGTGGACTTTACATGTATGATATTCTACATATTATGACCGTTGAATAAACTTAAATCGGGTTCAAAA

Function

NR:

description
neurturin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603676.2 True 4981 mRNA 0.42 3 60605208 60626475

Neighbor

gene id symbol gene type direction distance location
LOC110524219 LOC106613704 coding downstream 91728 60509679 ~ 60513480 (-)
LOC110524218 LOC106613703 coding downstream 128760 60471312 ~ 60476448 (-)
ccl44 LOC106613702 coding downstream 143014 60459847 ~ 60462194 (-)
LOC118964632 NA coding downstream 178674 60414163 ~ 60426534 (-)
LOC110524214 LOC106613699 coding downstream 206346 60395024 ~ 60398862 (-)
ndufa11 LOC106613708 coding upstream 52223 60678698 ~ 60682883 (-)
cers4a LOC106613711 coding upstream 69428 60695903 ~ 60728972 (-)
LOC110524228 LOC106573568 coding upstream 234972 60861447 ~ 60884008 (-)
timm44 LOC106613715 coding upstream 275923 60902398 ~ 60914281 (-)
LOC110524230 hnrpm coding upstream 288542 60915017 ~ 60930663 (-)
G423205 NA non-coding downstream 8926 60596015 ~ 60596282 (-)
G423202 NA non-coding downstream 11011 60593903 ~ 60594197 (-)
G423200 NA non-coding downstream 12383 60592615 ~ 60592825 (-)
G423180 NA non-coding downstream 29435 60556269 ~ 60575773 (-)
G423155 NA non-coding downstream 38795 60505662 ~ 60566413 (-)
G423230 NA non-coding upstream 914 60627389 ~ 60627595 (-)
G423246 NA non-coding upstream 24897 60651372 ~ 60652062 (-)
G423251 NA non-coding upstream 73574 60700049 ~ 60704571 (-)
G423291 NA non-coding upstream 117797 60744272 ~ 60744501 (-)
G422347 NA other downstream 504152 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1466951 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1568909 59026103 ~ 59036299 (-)
G420421 NA other downstream 2191065 58413128 ~ 58414143 (-)
G420193 NA other downstream 2491148 58112387 ~ 58114060 (-)
LOC110524239 LOC106573579 other upstream 432519 61058949 ~ 61081864 (-)
G424474 NA other upstream 990395 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1023492 61649967 ~ 61651775 (-)
G424502 NA other upstream 1032558 61659033 ~ 61659585 (-)
G424649 NA other upstream 1261723 61888198 ~ 61927422 (-)

Expression


Co-expression Network