LOC110524224 (LOC106613709)


Basic Information

Item Value
gene id LOC110524224
gene name LOC106613709
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60666192 ~ 60692763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603679.2
GTGATTCTTTCCGGGGCGAAGTTTAAGCCACAGGTTACAAAACTGTTGCGAAATTCATTGCATTTATCCAGCCTTTTATATCAAAACAGTGCAGACAACGAACTATTAGATTGCACGAGTCATGTTGTTCGTAATTATTACATGGAATTATATCTATTGTTACGTTTCTCATGAGTTTCAGATATTAGATATATCATAGGATGGCGTATCGGTACTGTAACTGGTTAACTAGTTAGCTTGCTGTTTCGGTTTCTAGCATAGCATCATCAAGCAGTTTTTTCTGGACACGGAACAATGTTTTTTGGTGCAATTGTAGAGTTGTTTACCGAACTAGGAGGACCTATACTAAACGCTGAAGAAAGTGCAGCCATGGCAGGAAGAGTaaacaccagccctccggtgaaATGCTTGTTCACGAGCAATGAGTCAATAGTCACGATCAGTCTTCTACGGTGAGCTAGTGTACATTTACTTTTAGGTCGTGTCATATTCCTCATGTGACATGTCCTCGCCGTCACCGGTACAAATTCGAGAGGCGAACGCACACTTGGCCGCGGTGCACAGGCGGGTAGCAGAACTGGAGCAGCGGCTCGAGGCAGCAGAGAACACCGTGAGGGAGCAAGCAGAGAGTCTCATCAGGAAGGACGAGCAACTGAGGGCTGCTACCCAGGAGATCACCGAGGCCAAGAATAAAGAGATTTACTACCTCCACGAGAAGCTGTGCAAGTCAGAGGACACCATCCAGAGGTTTCAGAACATGATCAAGGAGAAGAATGCTATGATAGGCCAGTTGCAACATCGCTGCCAGCTCCTGGACAACATCTGTAAGAGCAGGCCTTTACTAGACAGTATGCTGTTCCATATGGCTGAGGCAGAAAGACTTGGGCCAGTGGTGGGGATGGGTGAACCCACTGTCAAAACATCCCTCACAGACGGGGAGTCAAACTGCAGTCCCAACCGCATCTCTAACCACAAAGACTTCTCTCTCAGTGAGGATGACCAGGAGCTGGATGAGATAGTGTTTGGAACAACTGTATAGTACAAGGCCCCTGAGAAGAGTTAGGTTAGTGAAGAGGTTCTAGAAGAGGGTGGTACTTGAAGTAGAGGCATGAGTCATTTCAAAACATCTGCATGTTGTtattgaattttaaaaaatctcaaatagaacaTTTGTGCTCTAAGTAGTTCTTTATACTCTGCAGATAACTTACAAGTTAACATGATGTCACATGGGGGAACTGCTTGACACGTTATGAAGACTTTGGTTTAACCAAATAAAGGGAAACTAATCTGCCTTGATTCCACATCTTAACCAGACAATAACCAGGTGTCCATTTGACATCAGTTTCTGTTGTTTTAACTGCTGTATTTTTGTACTGTAATATTTGGAAATGGTGTAAAAATTACCTCTGTTTATGTTCAGCTCAAAGTGTTCAAAGGTCAAAAAGTGTTGAGAAGGTCAGAGTTCAGAAAATACATCTGTTGCACATGCAAGGCTAGGTTCTACTGCATCCCATGCATTTGACTATATAGTATACAGTTTACATTGAATCAGTCATTCTGCACTGACAAAGTTTTTTTTGAAGTGACAATTAAACTTAAAGTGCTTGAGGTTATTTTCGGGGAGTGTACTTACTCTACATGTAACCCATGTAAGCATGGCATTTAATGGTTAATCTAAGACATACATTCGCCTCTTGTTGGCGTCAATATTTGCTTCAGAGAAGCAAAGTCTATGCAACATTGAAGTTTGCGTCACTCTTACAGTACACTCACTCTTGCATTACATAAGATGCTACATAGATGTGACATTCCAGTAGGGTCAAAAGCAGGGGAAATCATGCCTTGTGCTCATAATAATACTGTACtgttttgcttagtcattatatAAGCAATATTATATATTGTTTTGGCTTAAATCATCAGGTGGCTAAAAGTATTGTGTTATGtctgctgtgtctttcagtaCAACTGCATGATTGTGCAGCTTAAACTGTTCCTCTTGAAATGTCAATGTGTGTTGCTCTGTtcatttaagaaaatattttttgAGAAGTGGTATTTTGATTCAATGAGGAAGTTTTTTTTTAGCAACAGACCAGTCTGCtacataaataaatgatttatttCTACAATA
>TU478974
ATTAAACTCAAAAGTGCTTGAGGTTATTTTCGGGGAGTGTACTTACTCTACATGTAACCCATGTAAGCATGGCATTTAATGGTTAATCTAAGACATACATTCGCCTCTTGTTGGCGTCAATATTTGCTTCAGAGAAGCAAAGTCTATGCAACATTGAAGTTTGCGTCACTCTTACAGTACACTCACTCTTGCATTACATAAGATGCTACATAGATGTGACATTCCAGTAGGGTCAAAAGCAGGGGAAATCATGCCTTGTGCTCATAATAATACTGTACtgttttgcttagtcattatatAAGCAATATTATATATTGTTTTGGCTTAAATCATCAGGTGGCTAAAAGTATTGTGTTATGtctgctgtgtctttcagtaCAACTGCATGATTGTGCAGCTTAAACTGTTCCTCTTGAAATGTCAATGTGTGTTGCTCTGTtcatttaagaaaatattttttgAGAAGTGGTATTTTGATTCAATGAGGAAGTTTTTTTTTAGCAACAGACCAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603679.2 False 2137 mRNA 0.41 2 60690473 60692763
TU478974 True 514 lncRNA 0.36 2 60666192 60692730

Neighbor

gene id symbol gene type direction distance location
LOC110524221 ranbp3 coding upstream 123890 60546181 ~ 60566583 (+)
ctns LOC106613706 coding upstream 146986 60534533 ~ 60543487 (+)
LOC110522875 NA coding upstream 206043 60480168 ~ 60484430 (+)
LOC110524216 LOC106613701 coding upstream 237831 60435763 ~ 60452642 (+)
LOC110524215 LOC106613700 coding upstream 258150 60427110 ~ 60432323 (+)
LOC110524226 LOC106573564 coding downstream 1457 60694220 ~ 60695905 (+)
LOC110524227 fbn3 coding downstream 77993 60770756 ~ 60861371 (+)
LOC110524234 LOC106613716 coding downstream 246567 60939330 ~ 60942382 (+)
LOC118964633 polr2e coding downstream 384741 61077504 ~ 61081007 (+)
tm6sf2 tm6s1 coding downstream 555809 61248572 ~ 61265206 (+)
G422717 LOC106613708 non-coding upstream 7728 60678666 ~ 60682745 (+)
G422705 NA non-coding upstream 27785 60662361 ~ 60662688 (+)
G422679 NA non-coding upstream 60032 60630236 ~ 60630441 (+)
G422675 NA non-coding upstream 64252 60625953 ~ 60626221 (+)
G422674 NA non-coding upstream 64593 60625490 ~ 60625880 (+)
G422720 NA non-coding downstream 1095 60693858 ~ 60694107 (+)
G422701 NA non-coding downstream 7280 60700043 ~ 60704580 (+)
G422811 NA non-coding downstream 194821 60887584 ~ 60889990 (+)
G422814 NA non-coding downstream 197415 60890178 ~ 60890448 (+)
G420634 NA other upstream 1746256 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2273697 58411240 ~ 58418268 (+)
G419452 NA other upstream 2790825 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3323136 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 3732308 56943838 ~ 56958165 (+)
G423922 NA other downstream 1028774 61721537 ~ 61722024 (+)
G424079 NA other downstream 1412760 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1590389 62283054 ~ 62327772 (+)
G425224 NA other downstream 2352327 63045090 ~ 63051530 (+)
G422659 NA non-coding upstream 68820 60597023 ~ 60597372 (+)

Expression


Co-expression Network