LOC110524228 (LOC106573568)


Basic Information

Item Value
gene id LOC110524228
gene name LOC106573568
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60861447 ~ 60884008 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110524228
GCCCTCATATCATATAGTCGTCCCCAGGCAGCAAAGCGCAAGAGCACACATGCTTTTGGGACGAGCGAACCTCACAGCGCACGAAGTTGGACCAAACCGGACTCTTGTAAAGGATAAAGACTTGTCACCTCTCAAGAACTCAGGTTGTGTGAGGGGAGGAAGTTGTGAAGTCACCCGGAGGAGAAGCAGTTACTGTTGGGTTACAGACCCGGAGTAAGGCTTGGCTCGGTACACCAGAAGGAACCAAGCCTTCTTTCAGAGGTCCTCTTCTTCCACACAGTCATACCCAACCAGTGACTGTGCAAATCCATTCACAGACGGACACAGAACTTAACAAAATCTCTTGTACCCTATATTTGAAAGGAGTTTTCAATCCTAAAAGTACACACTCTATCGGAAGACTGCATGGTGAAAGTGTTACTTTGTTAGACACCCACAGGGCTATAGACAGAGGCTCTACTTATCAAACCCACTCACTGTTCCTACCCTGGAGAAAAATGCTTATTTCGCATCTAACGCTAGCATCGAACGCTAGCATCTAACGCTAGCCCGACGTGCTTCGTGTTGCTTTCACATTCAGCGCCATTGATCCACTGACCGCCCTGTAATTTGATTAGCATTCTAGCCTCTCTTATTattttaaaaacacacacacaggcaacccTCCAAATGACACTGTTTTCACAAATATTATTGGCCTTGTTGATCATGAGGCACATGCTGCTGTCAGCTCATGCAATCACCATCCACTACAGACAACACCTGGGTATGAGGGTCCCATCTGCACACTATTAGCCCCCATTGAGAGAACTGGAGAGTACTACTACACTTCCCTGTGTTGTACTGCTATGTTTATTCACTCTGGCAGCTGCCAGTGTCATGTCCTATTTGTCCGGGCGGCTGTCTGTGTGAATGGATACGACAGGGTTATGATGAATACGTGCTGTTGTCGTCTTCTACTGCCTACGGTTGGGTCACTGTGAGGGGAAGAGATCCTAGGTCTGATCATACTGTTTGTCTATCACCCTGTCAGAAGGGATCAAGACCAAATCTCTCTTGAAGTAGACACTTCATCTCAAAGAGACTAACATCTCAAAGAATAAACAAAGGCTGACTAGAACACATCAGTCTGTCCAACCGTCTGTCTGGTTGTACCCCCGACTGTGGCCCACCTCTTGCCCGCTCCCCCCACCATCCAGTCTGTGTGTAAGTTCTGCCGACGGGCTGCTTGGAGGATGAGCGATGTCCCCACCCTGGACTATGAGCTGCTGCTGTCCCCTGGGCCCTCCCTCCCTGGGCCCCCCAGCAGCCCTGCTCTGGTGGGGGGCGACGCGGAGCAGAGGACGGCCTTTGCCTTCGTGGGGCTCCTCATGCTCTTCCTTGTCTTCCTGCTGGTGCGCTGCTTCCGCATCCTGCTGGACCCCTACAGCCGCATGCCATCCTCCTCCTGGACCGAACACAAGGAGGGCGTAGAGAGGGGGCAGTTTGACTACGCCCTGGTCTagacctgggtcgtgttcattaggcaccaaacggaagaaaggggactgaaacagggagggactacccgAACTTGTCCAAAAAGAAAATGTTGTTTTCATTTTCCGTTGCACAACGTTTcgctacggtgtgccctaatgaaaaCGACCCCGGTAGTGTCTAAAGGGGGCAGTTTGACTGGCCCTCCGGTAGAAACAGAGACCACAGTTGTCAAGACCGGATCCCTCAACACCCAGACCAAGACCTTTGACTACATACTGCTGCAGAGACCGAGGAAAGATGAGCCGTTTTGACTATATGCTGCCATCAAGGCCCACACCAAAACCAGACCACCGGATTGCTTGAGACCCAGACTGTTACCAAGACTAGACCATTTGAGACCTAGACTTGCAACTCGGAGCCAGAGGTAGAAAGGGGTtgtatgtagtgcactgctgCCTTAATTTGCTGCATTTCCCCTCACAACACTTCCTCCTCATCTTTTAGTCCCTGTAGATTGGCTAATATGCAGGGGAGTGCTGACAAAGCCATTACAAACACAATGGGATTTCAAACAAGATCCTTCCAGATGAAACGTATAGGCTACATCAGAGTAGCTTTCAATATTTACATCACCCCTGTTTCTGTACCTCCCAGTTTATGATTTGTTACAGTATATTTGACAGTTGTGACCTTTTTTTAATATTGATTGTCCTCTGACAAATGATCAATTGTATTTTTCCCTCATAGATTTCCGACTGGGTTGAGATATTACAACTGTGTTGAGATGCATCCGCCCAGGCTGGTGATTTGTCTTCAAAGGAACATTAGtagtgtgttttgtgtttgtatAACTGAAACAAAGCCATATCTATCATATATatgtacacatacatacatgttgTTTGGTTGCCCTGTTAGCTTTAACCACCTTGCCAAGCTTAGTGAAAACATGCACTCTACAACTGCGACTTTTAGACCAGAAATGCTTTATTTTTGTATTCCAACTAAAGTTTGGATGGAGTCTCCTTTTGCTAATATTTCCTGTGTTTTCTCTGATTTGTAGCACTCTCAATTTTGTCTTTGGTCTGTGATTCTTGAGCTAGCCTAGCTACACAACGAAACATGATGTGCTTCCATATACGAAGCACGGCAGCAATTTTTCAACTCGCCTCTACTTGGCGATATTTTCTTTGGTCTCGATTTGGAAGAAACACGTCTCTTATAAATGTCTGTGTTCAGTTGCAGGTGGTACTCCGAAAAACAGAAAATTCTGAAAAATATTACATCCACTTTTTTTCCACCGCATGAGGTTTCTCGCCATGTTAGCTGCCGCACATCTCGCATTTCCCAACATCTTTGCTGGAACTAGTCAATGCGCTTCACACAGTACGACCAAAACAAAGATCTACACACATGCAAGAGGCATTTCTCACTCAGAGCCATAGCTACAATATTTTTgaattagatttttatttatttttaactcattcggggtctcaacttactgttgagttaaaatagtagaatacacaaggtgcaatttctaaaCTTGGTTGTGCTTCAGCAGTTTTACTCGTTATCTGTccctcaattagcccatgtcagttaACATGTTTTACATTTCTAAATTAGTCTTGCTAGTTATCTTATCATGGCCGAATTACCATGCCTAGggaccctgacctccagggggagccatttgattttgttagtcactctcacccAGATATCATGTTAACATGgcgaaatgtgtagaattgcaggaaattagatgTAAAACTGTAAGAACAACAATCTTATTTGTTTacctttttaaataaaatatttgttCTGCTAACAGATCCCTCTACATAATAAATTATAGTTTTTAAACCCAGCCAACCCAGAGTTAATGTGTAGCGGCtaattgtatactgtatgtgaatgAAGCTACAGCAACCAATGTGATAATGTCTGGGGTCATTTTTTacttgtttttgctgttctccaaatagcattttagttTAAAAATTCTATAaaaatgcagtaaatgagcttcAACGTTGTTAAACCCAGAGCAGACAGCTTTGCTTGCGTTTAAGATTTGTAAGTAGATATTTTTCATAACTGCTTTGTTTTTGCCACGCAGGGTTTAATTTTCTGAAATAAAAATGGGGTTTTCTTCAATTTGTGTTTCCAGTGTGGGAGTGTATTACTCTTCCTGTAAAATCAATAAAGCATTTCACCACATTA
>TU479664
AGCACACATGCTTTTGGGACGAGCGAACCTCACAGCGCACGAAGTTGGACCAAACCGGACTCTTGTAAAGGATAAAGACTTGTCACCTCTCAAGAACTCAGGTTGTGTGAGGGGAGGAAGTTGTGAAGTCACCCGGAGGAGAAGCAGTTACTGTTGGGTTACAGACCCGGAGTAAGGCTTGGCTCGGTACACCAGAAGGAACCAAGCCTTCTTTCAGAGGTCCTCTTCTTCCACACAGTCATACCCAACCAGTGACTGTGCAAATCCATTCACAGACGGACACAGAACTTAACAAAATCTCTTGTACCCTATATTTGAAAGGAGTTTTCAATCCTAAAAGTACACACTCTATCGGAAGACTGCATGGTGAAAGTGTTACTTTGTTAGACACCCACAGGGCTATAGACAGAGGCTCTACTTATCAAACCCACTCACTGTTCCTACCCTGGAGAAAAATGCTTATTTCGCATCTAACGCTAGCATCGAACGCTAGCATCTAACGCTAGCCCGACGTGCTTCGTGTTGCTTTCACATTCAGCGCCATTGATCCACTGACCGCCCTGTAATTTGATTAGCATTCTAGCCTCTCTTATTattttaaaaacacacacacaggcaacccTCCAAATGACACTGTTTTCACAAATATTATTGGCCTTGTTGATCATGAGGCACATGCTGCTGTCAGCTCATGCAATCACCATCCACTACAGACAACACCTGGGTATGAGGGTCCCATCTGCACACTATTAGCCCCCATTGAGAGAACTGGAGAGTACTACTACACTTCCCTGTGTTGTACTGCTATGTTTATTCACTCTGGCAGCTGCCAGTGTCATGTCCTATTTGTCCGGGCGGCTGTCTGTGTGAATGGATACGACAGGGTTATGATGAATACGTGCTGTTGTCGTCTTCTACTGCCTACGGTTGGGTCACTGTGAGGGGAAGAGATCCTAGGTCTGATCATACTGTTTGTCTATCACCCTGTCAGAAGGGATCAAGACCAAATCTCTCTTGAAGTAGACACTTCATCTCAAAGAGACTAACATCTCAAAGAATAAACAAAGGCTGACTAGAACACATCAGTCTGTCCAACCGTCTGTCTGGTTGTACCCCCGACTGTGGCCCACCTCTTGCCCGCTCCCCCCACCATCCAGTCTGTGTGTAAGTTCTGCCGACGGGCTGCTTGGAGGATGAGCGATGTCCCCACCCTGGACTATGAGCTGCTGCTGTCCCCTGGGCCCTCCCTCCCTGGGCCCCCCAGCAGCCCTGCTCTGGTGGGGGGCGACGCGGAGCAGAGGACGGCCTTTGCCTTCGTGGGGCTCCTCATGCTCTTCCTTGTCTTCCTGCTGGTGCGCTGCTTCCGCATCCTGCTGGACCCCTACAGCCGCATGCCATCCTCCTCCTGGACCGAACACAAGGAGGGCGTAGAGAGGGGGCAGTTTGACTACGCCCTGGTCTagacctgggtcgtgttcattaggcaccaaacggaagaaaggggactgaaacagggagggactacccgAACTTGTCCAAAAAGAAAATGTTGTTTTCATTTTCCGTTGCACAACGTTTcgctacggtgtgccctaatgaaaaCGACCCCGGTAGTGTCTAAAGGGGGCAGTTTGACTGGCCCTCCGGTAGAAACAGAGACCACAGTTGTCAAGACCGGATCCCTCAACACCCAGACCAAGACCTTTGACTACATACTGCTGCAGAGACCGAGGAAAGATGAGCCGTTTTGACTATATGCTGCCATCAAGGCCCACACCAAAACCAGACCACCGGATTGCTTGAGACCCAGACTGTTACCAAGACTAGACCATTTGAGACCTAGACTTGCAACTCGGAGCCAGAGGTAGAAAGGGGTtgtatgtagtgcactgctgCCTTAATTTGCTGCATTTCCCCTCACAACACTTCCTCCTCATCTTTTAGTCCCTGTAGATTGGCTAATATGCAGGGGAGTGCTGACAAAGCCATTACAAACACAATGGGATTTCAAACAAGATCCTTCCAGATGAAACGTATAGGCTACATCAGAGTAGCTTTCAATATTTACATCACCCCTGTTTCTGTACCTCCCAGTTTATGATTTGTTACAGTATATTTGACAGTTGTGACCTTTTTTTAATATTGATTGTCCTCTGACAAATGATCAATTGTATTTTTCCCTCATAGATTTCCGACTGGGTTGAGATATTACAACTGTGTTGAGATGCATCCGCCCAGGCTGGTGATTTGTCTTCAAAGGAACATTAGtagtgtgttttgtgtttgtatAACTGAAACAAAGCCATATCTATCATATATatgtacacatacatacatgttgTTTGGTTGCCCTGTTAGCTTTAACCACCTTGCCAAGCTTAGTGAAAACATGCACTCTACAACTGCGACTTTTAGACCAGAAATGCTTTATTTTTGTATTCCAACTAAAGTTTGGATGGAGTCTCCTTTTGCTAATATTTCCTGTGTTTTCTCTGATTTGTAGCACTCTCAATTTTGTCTTTGGTCTGTGATTCTTGAGCTAGCCTAGCTACACAACGAAACATGATGTGCTTCCATATACGAAGCACGGCAGCAATTTTTCAACTCGCCTCTACTTGGCGATATTTTCTTTGGTCTCGATTTGGAAGAAACACGTCTCTTATAAATGTCTGTGTTCAGTTGCAGGTGGTACTCCGAAAAACAGAAAATTCTGAAAAATATTACATCCACTTTTTTTCCACCGCATGAGGTTTCTCGCCATGTTAGCTGCCGCACATCTCGCATTTCCCAACATCTTTGCTGGAACTAGTCAATGCGCTTCACACAGTACGACCAAAACAAAGATCTACACACATGCAAGAGGCATTTCTCACTCAGAGCCATAGCTACAATATTTTTgaattagatttttatttatttttaactcattcggggtctcaacttactgttgagttaaaatagtagaatacacaaggtgcaatttctaaaCTTGGTTGTGCTTCAGCAGTTTTACTCGTTATCTGTccctcaattagcccatgtcagttaACATGTTTTACATTTCTAAATTAGTCTTGCTAGTTATCTTATCATGGCCGAATTACCATGCCTAGggaccctgacctccagggggagccatttgattttgttagtcactctcacccAGATATCATGTTAACATGgcgaaatgtgtagaattgcaggaaattagatgTAAAACTGTAAGAACAACAATCTTATTTGTTTacctttttaaataaaatatttgttCTGCTAACAGATCCCTCTACATAATAAATTATAGTTTTTAAACCCAGCCAACCCAGAGTTAATGTGTAGCGGCtaattgtatactgtatgtgaatgAAGCTACAGCAACCAATGTGATAATGTCTGGGGTCATTTTTTacttgtttttgctgttctccaaatagcattttagttTAAAAATTCTATAaaaatgcagtaaatgagcttcAACGTTGTTAAACCCAGAGCAGACAGCTTTGCTTGCGTTTAAGATTTGTAAGTAGATATTTTTCATAACTGCTTTGTTTTTGCCACGCAGGGTTTAATTTTCTGAAATAAAAAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC105011660

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110524228 False 3714 mRNA 0.44 2 60861447 60884008
TU479664 True 3592 lncRNA 0.44 2 60861527 60883966

Neighbor

gene id symbol gene type direction distance location
cers4a LOC106613711 coding downstream 132475 60695903 ~ 60728972 (-)
ndufa11 LOC106613708 coding downstream 178564 60678698 ~ 60682883 (-)
LOC110524222 LOC106613707 coding downstream 234972 60605208 ~ 60626475 (-)
LOC110524219 LOC106613704 coding downstream 347967 60509679 ~ 60513480 (-)
LOC110524218 LOC106613703 coding downstream 384999 60471312 ~ 60476448 (-)
timm44 LOC106613715 coding upstream 18390 60902398 ~ 60914281 (-)
LOC110524230 hnrpm coding upstream 31009 60915017 ~ 60930663 (-)
LOC110524231 LOC106613717 coding upstream 59999 60944007 ~ 60951642 (-)
LOC110524236 rb11b coding upstream 68897 60952905 ~ 60966146 (-)
LOC110524237 LOC106613718 coding upstream 82392 60966400 ~ 60970979 (-)
G423360 NA non-coding downstream 5524 60855260 ~ 60855923 (-)
G423361 NA non-coding downstream 6332 60854583 ~ 60855115 (-)
G423365 NA non-coding downstream 8959 60852156 ~ 60852488 (-)
G423364 NA non-coding downstream 9748 60851103 ~ 60851699 (-)
G423363 NA non-coding downstream 14083 60846910 ~ 60847364 (-)
G423384 NA non-coding upstream 17508 60901516 ~ 60901755 (-)
G423391 NA non-coding upstream 48791 60932799 ~ 60933048 (-)
G423394 NA non-coding upstream 52992 60937000 ~ 60937221 (-)
G423435 NA non-coding upstream 147263 61031271 ~ 61093488 (-)
G422347 NA other downstream 760391 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1723190 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1825148 59026103 ~ 59036299 (-)
G420421 NA other downstream 2447304 58413128 ~ 58414143 (-)
G420193 NA other downstream 2747387 58112387 ~ 58114060 (-)
LOC110524239 LOC106573579 other upstream 174986 61058949 ~ 61081864 (-)
G424474 NA other upstream 732862 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 765959 61649967 ~ 61651775 (-)
G424502 NA other upstream 775025 61659033 ~ 61659585 (-)
G424649 NA other upstream 1004190 61888198 ~ 61927422 (-)

Expression


Co-expression Network