Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524230 |
| gene name | hnrpm |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 60915017 ~ 60930663 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| heterogeneous nuclear ribonucleoprotein M-like isoform X3 |
| id | name | namespace |
|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0019013 | viral nucleocapsid | cellular_component |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K12887 | HNRNPM; heterogeneous nuclear ribonucleoprotein M |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021603686.2 | False | 2551 | mRNA | 0.52 | 15 | 60915017 | 60930097 |
| XM_021603688.2 | False | 2316 | mRNA | 0.54 | 14 | 60915224 | 60930114 |
| XM_021603687.2 | True | 2100 | mRNA | 0.55 | 15 | 60915224 | 60930663 |
60,908,000
60,910,000
60,912,000
60,914,000
60,916,000
60,918,000
60,920,000
60,922,000
60,924,000
60,926,000
60,928,000
60,930,000
60,932,000
60,934,000
60,936,000
60,938,000
60,940,000
60,942,000
NC_048569.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| timm44 | LOC106613715 | coding | downstream | 736 | 60902398 ~ 60914281 (-) |
| LOC110524228 | LOC106573568 | coding | downstream | 31009 | 60861447 ~ 60884008 (-) |
| cers4a | LOC106613711 | coding | downstream | 186045 | 60695903 ~ 60728972 (-) |
| ndufa11 | LOC106613708 | coding | downstream | 232134 | 60678698 ~ 60682883 (-) |
| LOC110524222 | LOC106613707 | coding | downstream | 288542 | 60605208 ~ 60626475 (-) |
| LOC110524231 | LOC106613717 | coding | upstream | 13344 | 60944007 ~ 60951642 (-) |
| LOC110524236 | rb11b | coding | upstream | 22242 | 60952905 ~ 60966146 (-) |
| LOC110524237 | LOC106613718 | coding | upstream | 35737 | 60966400 ~ 60970979 (-) |
| pip5k1ca | LOC106613719 | coding | upstream | 42480 | 60973143 ~ 61053401 (-) |
| LOC110524239 | LOC106573579 | coding | upstream | 128286 | 61058949 ~ 61081864 (-) |
| G423384 | NA | non-coding | downstream | 13262 | 60901516 ~ 60901755 (-) |
| G423360 | NA | non-coding | downstream | 59094 | 60855260 ~ 60855923 (-) |
| G423361 | NA | non-coding | downstream | 59902 | 60854583 ~ 60855115 (-) |
| G423365 | NA | non-coding | downstream | 62529 | 60852156 ~ 60852488 (-) |
| G423391 | NA | non-coding | upstream | 2136 | 60932799 ~ 60933048 (-) |
| G423394 | NA | non-coding | upstream | 6337 | 60937000 ~ 60937221 (-) |
| G423435 | NA | non-coding | upstream | 100608 | 61031271 ~ 61093488 (-) |
| G423495 | NA | non-coding | upstream | 315895 | 61246558 ~ 61246791 (-) |
| G422347 | NA | other | downstream | 813961 | 60100765 ~ 60101056 (-) |
| lsg1 | lsg1 | other | downstream | 1776760 | 59131152 ~ 59138429 (-) |
| G420982 | LOC106613655 | other | downstream | 1878718 | 59026103 ~ 59036299 (-) |
| G420421 | NA | other | downstream | 2500874 | 58413128 ~ 58414143 (-) |
| G420193 | NA | other | downstream | 2800957 | 58112387 ~ 58114060 (-) |
| G424474 | NA | other | upstream | 686207 | 61616870 ~ 61617244 (-) |
| G424499 | LOC106613729 | other | upstream | 719304 | 61649967 ~ 61651775 (-) |
| G424502 | NA | other | upstream | 728370 | 61659033 ~ 61659585 (-) |
| G424649 | NA | other | upstream | 957535 | 61888198 ~ 61927422 (-) |
