LOC110524230 (hnrpm)


Basic Information

Item Value
gene id LOC110524230
gene name hnrpm
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60915017 ~ 60930663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603686.2
GTCATTTGCGTGGGCATCGTTTTCGTGAAGTTCTCAGCTAATCCGTCTATAACCTCTCCCAAACGGATGCATTTCTCCGGACAGTTGGTGGCGGCAACAATTTAACGTTACCTTTTGAGTGTAGTTAGCCATAAAACCCAAAGAAGAATTCATCCGCCATTTCACTAGCTTGCAGCCGGCCAGTCTCTCCAAAGTCATACACTAAACCCTATATTTATTCAATACTGCGTAAGTGAAGGTCCACTGCCAAACTTAGGCAATATTTTAATAACTTTGTTGAAGTACTCTACTGACCGCAAATTAATTCAGCAACAAAACAGCGGAAACAGGTTAAGCTGCGAAGATGTCGACCGAGGCCGCTGCTACGGAGAAACCAGGCCAGGGGGAAATGAACGGCAAGTCCAAGCATGAACCCAATACCAGGAAGGAGAGGCCCCAGAAGCGTGGAGGTGGTCGCTTTGAGCCCTATGGAAACCCATCAAAGAGATACCGTGTGTTTGTCAGCAACATCCCATACGATGTGAAATGGCAGGCACTCAAAGATCTAATGAAAGAAAAAGTGGGTGAGGTAACGTACGTGGAACACTTAATGGACGGAGAAGGCAAATCAAGGGGTTGTGCGATTGTTGAGTTCAGGACTGAGGAGCTGATGAAGAAGGCTGTGGAGAAGGTCAACAAGCACAACCTGAATGGTCGGCCCCTGAAGGTTAAAGAGGACCCAGATGGTGTGATTGCCCAGAGGGATTCACACAGGGcccagggtggtggtggtggccccCCAGGCGGCCATGGTGGAATGAacatggggatggggatggatcACATGAATATGGAGCGGATGAACATGGACTGCATGGGCCCAGGACCGGGCGGCCCACCCATGGTCAACATTCCCCCCAGCCTCATGAACAACTCTAACATCCCCAATGAGATTATTCACGGGCTGCAGGCTGGCAAGATCGGAAGCACGGTCTTCGTAGCTAACCTGGACTACAAGGTTGGCTGGAAGAAGCTGAAGGAGGTGTTTGGCATGGCAGGAGTGGTGGTGCGTACTGACATCTTGGAGGACAAGGATGGGAATAGCAGGGGCATGGGAACTGTCACCTTTGACATGCCTATTGAAGCTGTCCAAGCCGTCAGCATGTTCAACGGTCAACTACTGTTCAACCGGGTCATGCATGTCAAACTGGATGAGAAGTCCTTACCAAAAGGAGACTTTGCACCACAGGAGAGACCCCCAGCACTACCCCGTGGCCTGAGTGGCATTGGGCAGGGACTGGGGCCTGGTGGCCAACCCATTGACGCCACCGCACTGAACAGAGGTGGTGGAGGAATGGGCAACATGGGACCTGGGGGCATGGATGGCATGGGCTTCGGTGGTGGCATGGGTAGAATGGGAGgCATGGATAACTTTGGCGGAGGAATGAATAACATGGAGCGCTATGGACCATCAGGAATGGGACGTATGAATGAGATGGACCGTGGGATTGGTGGTGCTTTTGACCGGGAGTGTGGTCGAAATGAAATGGGCATGTCTCGCAATAATTTTGGAGAGTCCTTTGATAGAGGAATGGGTAGCTCACTGGGCATGGACCGCATGAGCTCTGGCATGGATCGCCTGGGTGGTGGAATGGACCGTCTGGgtgggatggagaggatggaccgCGTGTCTGATCTGGACAGGCTGGGGGGCTCTGGCTTTGACCGTATGGGCTCTGGGCTGGACCGGCTGGGTCCCAGTATGGACAGACTTGGTTCTGGCCTGGATCGTATGAGCTCCAGCATGGACCGCCTGGGCCCAGCTGGGTTTGACTGCCTAGGCCCATCCAGTTTAGACCGCATGTCCGCCGGCCTGGACTTCACCTCCCCCATGGGCATGGCGGACCGCATGAACACCGGCATGGAGAGGATGGGAACCAACTTTGACCGCATGGGGTCTGCTGGCATGGACCGCTTCCCGACCACCGGGCTGGACCGCATGGGCTCCACCATGGACCACATGGGCGCTGCAAGTGTTGGAGGCCAGTATGACCGGCCTGCTGAGATGGAACGTGGGGGCTTTGGAGGAAATGGCTTTGGAGGTCCTGGGGCCAATGCCAGGAAGGGCTGTCAGATCTTTGTCCGGAATCTGCCATATGACTTCACCTGGAAGGTGCTGAAGGATACTTTCAATACATGCGGTATCGTCCAATATGCTGACATCAAGACGGAGAATGGCAAGTCCAAGGGCTGTGGCGTGGTTCGCTTCGACAACCCGGAGACTGCCGAGAGAGCCTGTCACACCATGAATGGCTACAGGCTGAATGGAAGAGAGATTGACGTCAGAATTGACAGAAATGCCTAATTGTCCCAGATTGTCATTTTGACCCTGATATTTGCATATTTCTTGGTTTGTTGGACATTTGTAACAGTGCAAATGTGTACTTTTAGTTATTGCTCATCTGTGCATTTTTCTTTTTAGTAACCAAATTGTATTTCTTCATTTTACTTAAAGCTTCACTTCATTGCCTTTTTGTTCTATGAGGTGTTTTGATAATAAATAACATTGGAA
>XM_021603688.2
GTGTTTTTCTCCGTGTTGTCATTTGCGTGGGCATCGTTTTCGTGAAGTTCTCAGCTAATCCGTCTATAACCTCTCCCAAACGGATGCATTTCTCCGGACAGTTGGTGGCGGCAACAATTTAACGTTACCTTTTGAGTGTAGTTAGCCATAAAACCCAAAGAAGAATTCATCCGCCATTTCACTAGCTTGCAGCCGGCCAGTCTCTCCAAAGTCATACACTAAACCCTATATTTATTCAATACTGCGTAAGTGAAGGTCCACTGCCAAACTTAGGCAATATTTTAATAACTTTGTTGAAGTACTCTACTGACCGCAAATTAATTCAGCAACAAAACAGCGGAAACAGGTTAAGCTGCGAAGATGTCGACCGAGGCCGCTGCTACGGAGAAACCAGGCCAGGGGGAAATGAACGGCAAGTCCAAGCATGAACCCAATACCAGGAAGGAGAGGCCCCAGAAGCGTGGAGGTGGTCGCTTTGAGCCCTATGGAAACCCATCAAAGAGATACCGTGTGTTTGTCAGCAACATCCCATACGATGTGAAATGGCAGGCACTCAAAGATCTAATGAAAGAAAAAGTGGGTGAGGTAACGTACGTGGAACACTTAATGGACGGAGAAGGCAAATCAAGGGGTTGTGCGATTGTTGAGTTCAGGACTGAGGAGCTGATGAAGAAGGCTGTGGAGAAGGTCAACAAGCACAACCTGAATGGTCGGCCCCTGAAGGTTAAAGAGGACCCAGATGGTGTGATTGCCCAGAGGGATTCACACAGGGcccagggtggtggtggtggccccCCAGGCGGCCATGGTGGAATGAacatggggatggggatggatcACATGAATATGGAGCGGATGAACATGGACTGCATGGGCCCAGGACCGGGCGGCCCACCCATGGTCAACATTCCCCCCAGCCTCATGAACAACTCTAACATCCCCAATGAGATTATTCACGGGCTGCAGGCTGGCAAGATCGGAAGCACGGTCTTCGTAGCTAACCTGGACTACAAGGTTGGCTGGAAGAAGCTGAAGGAGGTGTTTGGCATGGCAGGAGTGGTGGTGCGTACTGACATCTTGGAGGACAAGGATGGGAATAGCAGGGGCATGGGAACTGTCACCTTTGACATGCCTATTGAAGCTGTCCAAGCCGTCAGCATGTTCAACGGTCAACTACTGTTCAACCGGGTCATGCATGTCAAACTGGATGAGAAGTCCTTACCAAAAGGAGACTTTGCACCACAGGAGAGACCCCCAGCACTACCCCGTGGCCTGAGTGGCATTGGGCAGGGACTGGGGCCTGGTGGCCAACCCATTGACGCCACCGCACTGAACAGAGGTGGTGGAGGAATGGGCAACATGGGACCTGGGGgCATGGATAACTTTGGCGGAGGAATGAATAACATGGAGCGCTATGGACCATCAGGAATGGGACGTATGAATGAGATGGACCGTGGGATTGGTGGTGCTTTTGACCGGGAGTGTGGTCGAAATGAAATGGGCATGTCTCGCAATAATTTTGGAGAGTCCTTTGATAGAGGAATGGGTAGCTCACTGGGCATGGACCGCATGAGCTCTGGCATGGATCGCCTGGGTGGTGGAATGGACCGTCTGGgtgggatggagaggatggaccgCGTGTCTGATCTGGACAGGCTGGGGGGCTCTGGCTTTGACCGTATGGGCTCTGGGCTGGACCGGCTGGGTCCCAGTATGGACAGACTTGGTTCTGGCCTGGATCGTATGAGCTCCAGCATGGACCGCCTGGGCCCAGCTGGGTTTGACTGCCTAGGCCCATCCAGTTTAGACCGCATGTCCGCCGGCCTGGACTTCACCTCCCCCATGGGCATGGCGGACCGCATGAACACCGGCATGGAGAGGATGGGAACCAACTTTGACCGCATGGGGTCTGCTGGCATGGACCGCTTCCCGACCACCGGGCTGGACCGCATGGGCTCCACCATGGACCACATGGGCGCTGCAAGTGTTGGAGGCCAGTATGACCGGCCTGCTGAGATGGAACGTGGGGGCTTTGGAGGAAATGGCTTTGGAGGTCCTGGGGCCAATGCCAGGAAGGGCTGTCAGATCTTTGTCCGGAATCTGCCATATGACTTCACCTGGAAGGTGCTGAAGGATACTTTCAATACATGCGGTATCGTCCAATATGCTGACATCAAGACGGAGAATGGCAAGTCCAAGGGCTGTGGCGTGGTTCGCTTCGACAACCCGGAGACTGCCGAGAGAGCCTGTCACACCATGAATGGCTACAGGCTGAATGGAAGAGAGATTGACGTCAGAATTGACAGAAATGCCTAA
>XM_021603687.2
AACCTTGCTTATTCATGGTACGTCGAAGTCGATCGATGCCACGCCTTCTTAATCACATCCACTCGGAGTTTGTGCTGTAGTACAAATAAACACAACTGCTTATTTGGACGTAGCTAGCTATTTGACAGTGAAAAAGCGAGGGAAATGAACGGCAAGTCCAAGCATGAACCCAATACCAGGAAGGAGAGGCCCCAGAAGCGTGGAGGTGGTCGCTTTGAGCCCTATGGAAACCCATCAAAGAGATACCGTGTGTTTGTCAGCAACATCCCATACGATGTGAAATGGCAGGCACTCAAAGATCTAATGAAAGAAAAAGTGGGTGAGGTAACGTACGTGGAACACTTAATGGACGGAGAAGGCAAATCAAGGGGTTGTGCGATTGTTGAGTTCAGGACTGAGGAGCTGATGAAGAAGGCTGTGGAGAAGGTCAACAAGCACAACCTGAATGGTCGGCCCCTGAAGGTTAAAGAGGACCCAGATGGTGTGATTGCCCAGAGGGATTCACACAGGGcccagggtggtggtggtggccccCCAGGCGGCCATGGTGGAATGAacatggggatggggatggatcACATGAATATGGAGCGGATGAACATGGACTGCATGGGCCCAGGACCGGGCGGCCCACCCATGGTCAACATTCCCCCCAGCCTCATGAACAACTCTAACATCCCCAATGAGATTATTCACGGGCTGCAGGCTGGCAAGATCGGAAGCACGGTCTTCGTAGCTAACCTGGACTACAAGGTTGGCTGGAAGAAGCTGAAGGAGGTGTTTGGCATGGCAGGAGTGGTGGTGCGTACTGACATCTTGGAGGACAAGGATGGGAATAGCAGGGGCATGGGAACTGTCACCTTTGACATGCCTATTGAAGCTGTCCAAGCCGTCAGCATGTTCAACGGTCAACTACTGTTCAACCGGGTCATGCATGTCAAACTGGATGAGAAGTCCTTACCAAAAGGAGACTTTGCACCACAGGAGAGACCCCCAGCACTACCCCGTGGCCTGAGTGGCATTGGGCAGGGACTGGGGCCTGGTGGCCAACCCATTGACGCCACCGCACTGAACAGAGGTGGTGGAGGAATGGGCAACATGGGACCTGGGGGCATGGATGGCATGGGCTTCGGTGGTGGCATGGGTAGAATGGGAGgCATGGATAACTTTGGCGGAGGAATGAATAACATGGAGCGCTATGGACCATCAGGAATGGGACGTATGAATGAGATGGACCGTGGGATTGGTGGTGCTTTTGACCGGGAGTGTGGTCGAAATGAAATGGGCATGTCTCGCAATAATTTTGGAGAGTCCTTTGATAGAGGAATGGGTAGCTCACTGGGCATGGACCGCATGAGCTCTGGCATGGATCGCCTGGGTGGTGGAATGGACCGTCTGGgtgggatggagaggatggaccgCGTGTCTGATCTGGACAGGCTGGGGGGCTCTGGCTTTGACCGTATGGGCTCTGGGCTGGACCGGCTGGGTCCCAGTATGGACAGACTTGGTTCTGGCCTGGATCGTATGAGCTCCAGCATGGACCGCCTGGGCCCAGCTGGGTTTGACTGCCTAGGCCCATCCAGTTTAGACCGCATGTCCGCCGGCCTGGACTTCACCTCCCCCATGGGCATGGCGGACCGCATGAACACCGGCATGGAGAGGATGGGAACCAACTTTGACCGCATGGGGTCTGCTGGCATGGACCGCTTCCCGACCACCGGGCTGGACCGCATGGGCTCCACCATGGACCACATGGGCGCTGCAAGTGTTGGAGGCCAGTATGACCGGCCTGCTGAGATGGAACGTGGGGGCTTTGGAGGAAATGGCTTTGGAGGTCCTGGGGCCAATGCCAGGAAGGGCTGTCAGATCTTTGTCCGGAATCTGCCATATGACTTCACCTGGAAGGTGCTGAAGGATACTTTCAATACATGCGGTATCGTCCAATATGCTGACATCAAGACGGAGAATGGCAAGTCCAAGGGCTGTGGCGTGGTTCGCTTCGACAACCCGGAGACTGCCGAGAGAGCCTGTCACACCATGAATGGCTACAGGCTGAATGGAAGAGAGATTGACGTCAGAATTGACAGAAATGCCTAA

Function

NR:

description
heterogeneous nuclear ribonucleoprotein M-like isoform X3

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12887 HNRNPM; heterogeneous nuclear ribonucleoprotein M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603686.2 False 2551 mRNA 0.52 15 60915017 60930097
XM_021603688.2 False 2316 mRNA 0.54 14 60915224 60930114
XM_021603687.2 True 2100 mRNA 0.55 15 60915224 60930663

Neighbor

gene id symbol gene type direction distance location
timm44 LOC106613715 coding downstream 736 60902398 ~ 60914281 (-)
LOC110524228 LOC106573568 coding downstream 31009 60861447 ~ 60884008 (-)
cers4a LOC106613711 coding downstream 186045 60695903 ~ 60728972 (-)
ndufa11 LOC106613708 coding downstream 232134 60678698 ~ 60682883 (-)
LOC110524222 LOC106613707 coding downstream 288542 60605208 ~ 60626475 (-)
LOC110524231 LOC106613717 coding upstream 13344 60944007 ~ 60951642 (-)
LOC110524236 rb11b coding upstream 22242 60952905 ~ 60966146 (-)
LOC110524237 LOC106613718 coding upstream 35737 60966400 ~ 60970979 (-)
pip5k1ca LOC106613719 coding upstream 42480 60973143 ~ 61053401 (-)
LOC110524239 LOC106573579 coding upstream 128286 61058949 ~ 61081864 (-)
G423384 NA non-coding downstream 13262 60901516 ~ 60901755 (-)
G423360 NA non-coding downstream 59094 60855260 ~ 60855923 (-)
G423361 NA non-coding downstream 59902 60854583 ~ 60855115 (-)
G423365 NA non-coding downstream 62529 60852156 ~ 60852488 (-)
G423391 NA non-coding upstream 2136 60932799 ~ 60933048 (-)
G423394 NA non-coding upstream 6337 60937000 ~ 60937221 (-)
G423435 NA non-coding upstream 100608 61031271 ~ 61093488 (-)
G423495 NA non-coding upstream 315895 61246558 ~ 61246791 (-)
G422347 NA other downstream 813961 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1776760 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1878718 59026103 ~ 59036299 (-)
G420421 NA other downstream 2500874 58413128 ~ 58414143 (-)
G420193 NA other downstream 2800957 58112387 ~ 58114060 (-)
G424474 NA other upstream 686207 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 719304 61649967 ~ 61651775 (-)
G424502 NA other upstream 728370 61659033 ~ 61659585 (-)
G424649 NA other upstream 957535 61888198 ~ 61927422 (-)

Expression


Co-expression Network