LOC110524234 (LOC106613716)


Basic Information

Item Value
gene id LOC110524234
gene name LOC106613716
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60939330 ~ 60942382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603693.2
CAGGAAGATCCCCTCTTCCTGCGTTCGGTTGGAGACTGACAGCCAAGGCATTGTCTCGCTCATTGGGATACAGGGAAAAAAAGGGACGAGCAAACACTACAACCAACAGCTGAAACGCTAGACCAGGAATATATCGCAATTAAATTGGAGTCAATACGATTCTAAAGACATGGGTAACAGAGATGATGAGTACGATTTCTTGTTCAAAGTGGTGCTGATCGGAGACTCTGGTGTGGGGAAGAGTAACCTACTGTCCCGTTTCACACGGAATGAGTTCAACCTGGAGAGCAAAAGCACCATCGGTGTGGAATTCGCCACCCGCAGCATCCAGGTGGACGGCAAGATGATAAAGGCCCAGATCTGGGATACAGCTGGACAGGAGCGCTACAGAGCCATCACCTCAGCGTACTACCGGGGGGCGGTGGGGGCTCTCCTAGTGTACGACATTGCCAAGCATCTAACCTATGAAAACGTGGAGCGCTGGCTGAAGGAGCTGAGGGATCATGCTGATAACAACATCGTCATCATGCTGGTGGGCAACAAGAGTGACCTGCGCCACCTCAGGGCAGTGCCCACAGACGAGGCTCGCGCCTTCGCAGaAAAGAATACGCTATCATTTATTGAGACCTCAGCTTTGGACTCCACTAATGTAGAAGAGGCGTTCAAGAACATCCTCACAGAAATCCACCGAATCGTATCACAGAAGCAGATAGCTGACAGATCAGCACATGACGAGTCTCCAGGCAACAATGTAGTGGACATCAGTGTCCCCCCCACCACCGATGGGCAGAAAAACAAACTACCGTGCTGCCAAAGCCTGTGACCCTCAGCACTCTTCTGACCCCCTTTCCCCACCCCCCTCCACTTCCACCATCACACTCTTATCCTGTACTGCCCATTCTGTCTTTACCATATGTGGCGACgccctactctcccctccctgtATACAAAACTTACTTTTTATTACTTGTGAGCTCACATATGCTCTTCTGCCATTATTGTGAAACTTTAAAAAGCCTTCCTGTCACTTTTTCAGTTATTCATGGGTTCAACATTGAGGTTCCTGCAGTGTAGCAACAGGACAGTTGTCTGTGAAATGGGATGAGCTGGATTTGAAGTGCTGTAGTGCTGTTTTGGACTCTTGAGATTTGAACaatgaccactagatggtgctgtgtATATAGCCACTCACAGTTTCTCTCGAATAAGGCAGTATTATTACATTGGTATATGCATTTCGTCCAGAAAAGACCTTCATTGTATATTTATTCAAATGTATGTCTCACCTTTTCATTGTTTTCTTTTCAATAAGCACTGTAAGACTTTACAATAAACTCAATGACAAAGTA

Function

NR:

description
ras-related protein Rab-11B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07905 RAB11B; Ras-related protein Rab-11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603693.2 True 1349 mRNA 0.47 5 60939330 60942382

Neighbor

gene id symbol gene type direction distance location
LOC110524227 fbn3 coding upstream 77959 60770756 ~ 60861371 (+)
LOC110524226 LOC106573564 coding upstream 243426 60694220 ~ 60695905 (+)
LOC110524224 LOC106613709 coding upstream 246567 60666192 ~ 60692763 (+)
LOC110524221 ranbp3 coding upstream 372747 60546181 ~ 60566583 (+)
ctns LOC106613706 coding upstream 395843 60534533 ~ 60543487 (+)
LOC118964633 polr2e coding downstream 135122 61077504 ~ 61081007 (+)
tm6sf2 tm6s1 coding downstream 306190 61248572 ~ 61265206 (+)
hapln4 hapln4 coding downstream 324833 61267215 ~ 61285666 (+)
nr2c2ap nr2c2ap coding downstream 648221 61590603 ~ 61599332 (+)
LOC110524248 LOC106613729 coding downstream 694722 61637104 ~ 61655195 (+)
G422843 NA non-coding upstream 825 60938291 ~ 60938505 (+)
G422841 NA non-coding upstream 8053 60930972 ~ 60931277 (+)
G422838 NA non-coding upstream 12345 60924263 ~ 60926985 (+)
G422814 NA non-coding upstream 48882 60890178 ~ 60890448 (+)
G422811 NA non-coding upstream 49340 60887584 ~ 60889990 (+)
G422845 LOC106613717 non-coding downstream 5921 60948303 ~ 60949300 (+)
G422856 NA non-coding downstream 27012 60969394 ~ 60969655 (+)
G422860 NA non-coding downstream 29255 60971637 ~ 60971903 (+)
G422861 NA non-coding downstream 29575 60971957 ~ 60972184 (+)
G422858 NA non-coding downstream 35630 60978012 ~ 60988260 (+)
G420634 NA other upstream 1995113 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2522554 58411240 ~ 58418268 (+)
G419452 NA other upstream 3039682 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3571993 57352343 ~ 57367627 (+)
G423922 NA other downstream 779155 61721537 ~ 61722024 (+)
G424079 NA other downstream 1163141 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1340770 62283054 ~ 62327772 (+)
G425224 NA other downstream 2102708 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 2734032 63676409 ~ 63684848 (+)

Expression


Co-expression Network