LOC110524231 (LOC106613717)


Basic Information

Item Value
gene id LOC110524231
gene name LOC106613717
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60944007 ~ 60951642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603691.2
TGTTCGAGAGCATCAAATCCATGATGCATTGTGGGTAAATTGTGATTGACTGGATGATCTACAAATATTAATGAGTGGGTATTTTTGATGCaaagtgatttgtagatcagtcagtcagctgtCGCTTGCAATGTCGAACAAACTCATTGACTTCTCCAATCCCAAACCCCAGCATGTGTCTGCTTGGTCTGTTTCGCAAGCGTTCCCGGTAGTCTcgcgatgttgcgcctctgggtttagaaactctgtgctaCTGTTGTCTGACAGCTAGACGAGAACTGgcatagctagctagatatctgAAAGGAAATAAAGCAATTCTCAACATTGATAGTTTCTATAGaggactattttatacattgacAACCCCACATATCAGCTGTTAAAATGAAAAAAGAAGGAACGCGCTGTTGGGCCTAACTGCTCTGAGCTGAGTCTGTTCCTCATCAGTCCCTTGACACCTGACCCCCTGGACGGTGTAACCATGACGACAGGGGAGTGTTGCCACCTCCCGGGCTCTCTGTGTGACTGCACTGGCAACGCTGCCCTGTCCAAAAGCGTGGAGGAGTCGGATAACTGCAGATCACAGTATGTCACCCAGGTCACAGCTAAAGATGGACGGCTGCTCTCCACTGTCATCAAACCCGTGAGCACACAGAGCGATGGGCCAATCTGCCGGATCTGCCATGAGGGGGCCAACAGCGAGGGCCTCCTGTCCCCCTGCGACTGCACAGGGACTCTGGGCACAGTGCACAAGAGCTGCCTGGAGAAGTGGCTCTCCTCCTCCAACACCAGTTACTGTGAGCTGTGCCACACAGAGTTCACAATTGAACGGAAGCCCAGGTCCCTCACAGAGTGGATGCGGGACCCGGGCCCTCGGAACGAGAAGCGCACGTTGTTCTGTGACATGCTGTGCTTCCTGTTCATCACGCCCCTGGCAGCCATCTCTGGCTGGCTGTGTCTGAGGGGAGCTCAGGACCACCTGCACTTCAACAGCAGACTGGAGGCCGTGGGCCTCATCGCCCTCACCATCGCCCTCTTCACCATTTACGTCCTCTGGACTCTGGTATCATTCCGCTACCACTGTCAGCTCTACTCTGAGTGGAGACGAACCAACCAGAAAGTACGCCTGCTCCTTCCAGACGCGAAGGGTGGGCATTCTAGCCAGCATTCCTTGCTCTCCACGAAGCTGCTGAAAAAGACAGCTGACGAGACCATAGTATGAGGTcaaagTTCTCCACCTCCGACTATAAAAGTGAGGCATGGATCGTTGATGCTGATCTAAGGCGATTCATCCGGCAGTTGATTCCCTAACCACTGAGTGCAGAAGTGAGAAGTTTTGACTCCGGTTCACCAGCCACAGGCTATTCCACTGGGGATTATATATGCTCATGCCATTTTAATACGCAATTCAGTTGACTCCCTTCAATTTACCTCCCATCTGTTTTCCCCTTGGTGTGAGCAGGAATGTTGTTCGTGAAGATGGAGATTGTGCAATAAAACACAGTGGATGCGGTTGTTCTCGCAGTATGTGAGGAGACTGCTCCCAACACGCACAGTTTTGCATGCATGTGATGCACTGTTTattttttgttgggggggggggggtattgttttttgtttttttacattggggGATTGAAAGATCGGTTGGTCGAGCTTCCTTTGATTTAGTGTTGCTAGTTTGTATTTTGGTCAAGGTTTCCTCCCTGGGAGTATAGAGGTCTCATACTATCAGCACTTAATCAAAAAAAATGTGCAAATAGATCTATGTACAGTAGGTCTAGATGCCACTGATGATGAAAAGCCTTTATGGAAATGTGTATTCCACAAACATGAAGTTCAAACTTTTTGTGGTTTAGGGAAAGTAAGGCTTACCTTTCCAGTATCGCATGGTCAAGGTCAGACTTACAGGAAATCAACAGTACATTGCTCTCCTATGACGAGATTCCAATGAAAAGCTTTTAGTTGGTGTTTTTTTGTATTGGTGTGTTTTCTTTTTTGTGTAGTCACGTAACAATAGCTAGTAATCACATCCAGAAAGAGCGtagattggttggttgatgttaCTTTGGGTTTTGTGGAAGTTCCTATTCCCTCCGATATGCAGTTGACCAGACTCTGACGCCTTACACTCATACGTACCTACAGACTGTACCTTGACAGTAGAACCCAGTGTCTGGTTCTAGACTGTTATGGGTTTTGTTGTTCTCCATCTACCACAGCTTTAAAACATATGAGGTGACCtctggatgagagggagagatgtgcaAAAACAGCATAGGTCTTTGTGTGGGTCTTGTGCATTTGATTTCTTCCCTGTACACTGTATGGTTCTTTCAGACGTCCCTCTGTCTTAGCGACGCTTCATTTCCACATATTTCTATATGTATTGTTAATCATAGTGTCCTTGGTTGACCATACAAGTATTGACCCTGAATCTTAAAAGCTGTTAACAGGCCTAAAGAGAGGAGGATTAATGCAAATATCCTCCTCAGTAGGGGAAGCTCACGTTATGGTGCACAGAAGCCAAAAACCTAGGCCTAGATCTGTCACTCTTTTGTATTTTCTATGATAGTTGAATTTGTTTCAACCCCTTCATAGCAATCATGCTCCTATCTATTGCTCATCTGTAGGGGCAGGTTAAACTCTTCCGGGTTGATCACCTGAAGGGCTTTGCGGTGGAACAGCTATGCACTGGAAAGGTTTATTTATGCAGCTGTAAGAACCCTGGTTGTGGGAGTGGCATTCTGAAAATCAGATTAAACTTGGGGGGGAAAATGGTGATCTACAGTAAACAAAGTAGGAAGTCATCCTCCGCATGACACTAGTCAGCCCAGTTCCGTGTAGTGTTCTGTTGGGAGACCCATTCTGAAAAtagaaatgtttttgttgttgtgaagtggCGATTGTCACTCTGAAGGAATCCTCATCTGGTGTTAAAGGGTAGATAACATTGTGCAATAGTAATACTAGAGCTTagtatgaggttattttcctgcgtGTGTGGTGGGGTGGAACCGTGTTGAAGATCTTTCAGGGTGGAGAGAGTTCTTATCTGTGTCGTCAGCGATGGGCCACTGCCCGTGTCACATGCTGTCTCTGATTGGTGAGTTCGCCTCCAGCTGACGTGTTGGGAGCTATGGAGACTTTGCAATGTAGGGTGTAGTTACAGCAAGTGTGCAATTTGATCACTTTACAATGCAATTCTTACCTATAACCTTAACAATACGTAATGAAAGCAGAAATATAATGCAGAAGTAAGTGCATGTGAAGGATCATAGCAGTTGGCTCACTTGTGCAGGCTGAGAAGGTCACGATAGGATGTTGGATTTTTCTATGCGAGTCTTGAGTTGCCTACAATATGCTCAGAGACATTAAACTCCAGTGTTATAACCGCTAATTCAAACAGTTCCTTCTCTCCAAAGAAGCATTGATTCTTGTGTTTTATACCAGTATATCAAACGGCACTTTCACAAAACTATAATTGAAATGAATACAGTGTGGTTGTTTATATCATCTCCCAATACAGACTTTGAAAGGGATTTAAAAGTGTTACTGATATTGTACAATTTTCCCAGTTTCTGGTGTTCGGATATTGCTCCTCTGATTTCGTTTTTGATTGGAAGATGAAACCAAGGGTccagggcattgtcatgctcgTTTGTAAAAGGAGCAACATACCAGCTTTGTAGacttgtttttgttaatgttttaATCTCGTGTTCATTTTACCACAGTTTTTAATATATTCATGTGTATCATTCGTAATTTTGTTTCAATTATTCATTAAGCACAGGATTTGTATCAATCTTACACTATAGTATTTcaaaacatgtttatgttgtgcAATGTAAAAAAGAAAGATGTCTTCACCAAATATATGTTGGCGCTTGCAATCAGCCAAGAAAAGTGTGCAAAGCTAATTTAATAATGAAGCAACAGAATGGATAAACA
>XM_021603692.2
TGTTCGAGAGCATCAAATCCATGATGCATTGTGGGTAAATTGTGATTGACTGGATGATCTACAAATATTAATGAGTGGGTATTTTTGATGCaaagtgatttgtagatcagtcagtcagctgtCGCTTGCAATGTCGAACAAACTCATTGACTTCTCCAATCCCAAACCCCAGCATGTGTCTGCTTGGTCTGTTTCGCAAGCGTTCCCGGTAGTCTcgcgatgttgcgcctctgggtttagaaactctgtgctaCTGTTGTCTGACAGCTAGACGAGAACTGgcatagctagctagatatctgAAAGGAAATAAAGCAATTCTCAACATTGATAGTTTCTATAGaggactattttatacattgacAACCCCACATATCAGCTGTTAAAATGAAAAAAGAAGGAACGCGCTGTTGGGCCTAACTGCTCTGAGCTGAGTCTGTTCCTCATCAGTCCCTTGACACCTGACCCCCTGGACGGTGTAACCATGACGACAGGGGAGTGTTGCCACCTCCCGGGCTCTCTGTGTGACTGCACTGGCAACGCTGCCCTGTCCAAAAGCGTGGAGGAGTCGGATAACTGCAGATCACAGTATGTCACCCAGGTCACAGCTAAAGATGGACGGCTGCTCTCCACTGTCATCAAACCCGTGAGCACACAGAGCGATGGGCCAATCTGCCGGATCTGCCATGAGGGGGCCAACAGCGAGGGCCTCCTGTCCCCCTGCGACTGCACAGGGACTCTGGGCACAGTGCACAAGAGCTGCCTGGAGAAGTGGCTCTCCTCCTCCAACACCAGTTACTGTGAGCTGTGCCACACAGAGTTCACAATTGAACGGAAGCCCAGGTCCCTCACAGAGTGGATGCGGGACCCGGGCCCTCGGAACGAGAAGCGCACGTTGTTCTGTGACATGCTGTGCTTCCTGTTCATCACGCCCCTGGCAGCCATCTCTGGCTGGCTGTGTCTGAGGGGAGCTCAGGACCACCTGCACTTCAACAGCAGACTGGAGGCCGTGGGCCTCATCGCCCTCACCATCGCCCTCTTCACCATTTACGTCCTCTGGACTCTGGTATCATTCCGCTACCACTGTCAGCTCTACTCTGAGTGGAGACGAACCAACCAGAAAGTACGCCTGCTCCTTCCAGACGCGAAGGGTGGGCATTCTAGCCAGCATTCCTTGCTCTCCACGAAGCTGCTGAAAAAGACAGCTGACGAGACCATAGTATGAGTTCTCCACCTCCGACTATAAAAGTGAGGCATGGATCGTTGATGCTGATCTAAGGCGATTCATCCGGCAGTTGATTCCCTAACCACTGAGTGCAGAAGTGAGAAGTTTTGACTCCGGTTCACCAGCCACAGGCTATTCCACTGGGGATTATATATGCTCATGCCATTTTAATACGCAATTCAGTTGACTCCCTTCAATTTACCTCCCATCTGTTTTCCCCTTGGTGTGAGCAGGAATGTTGTTCGTGAAGATGGAGATTGTGCAATAAAACACAGTGGATGCGGTTGTTCTCGCAGTATGTGAGGAGACTGCTCCCAACACGCACAGTTTTGCATGCATGTGATGCACTGTTTattttttgttgggggggggggggtattgttttttgtttttttacattggggGATTGAAAGATCGGTTGGTCGAGCTTCCTTTGATTTAGTGTTGCTAGTTTGTATTTTGGTCAAGGTTTCCTCCCTGGGAGTATAGAGGTCTCATACTATCAGCACTTAATCAAAAAAAATGTGCAAATAGATCTATGTACAGTAGGTCTAGATGCCACTGATGATGAAAAGCCTTTATGGAAATGTGTATTCCACAAACATGAAGTTCAAACTTTTTGTGGTTTAGGGAAAGTAAGGCTTACCTTTCCAGTATCGCATGGTCAAGGTCAGACTTACAGGAAATCAACAGTACATTGCTCTCCTATGACGAGATTCCAATGAAAAGCTTTTAGTTGGTGTTTTTTTGTATTGGTGTGTTTTCTTTTTTGTGTAGTCACGTAACAATAGCTAGTAATCACATCCAGAAAGAGCGtagattggttggttgatgttaCTTTGGGTTTTGTGGAAGTTCCTATTCCCTCCGATATGCAGTTGACCAGACTCTGACGCCTTACACTCATACGTACCTACAGACTGTACCTTGACAGTAGAACCCAGTGTCTGGTTCTAGACTGTTATGGGTTTTGTTGTTCTCCATCTACCACAGCTTTAAAACATATGAGGTGACCtctggatgagagggagagatgtgcaAAAACAGCATAGGTCTTTGTGTGGGTCTTGTGCATTTGATTTCTTCCCTGTACACTGTATGGTTCTTTCAGACGTCCCTCTGTCTTAGCGACGCTTCATTTCCACATATTTCTATATGTATTGTTAATCATAGTGTCCTTGGTTGACCATACAAGTATTGACCCTGAATCTTAAAAGCTGTTAACAGGCCTAAAGAGAGGAGGATTAATGCAAATATCCTCCTCAGTAGGGGAAGCTCACGTTATGGTGCACAGAAGCCAAAAACCTAGGCCTAGATCTGTCACTCTTTTGTATTTTCTATGATAGTTGAATTTGTTTCAACCCCTTCATAGCAATCATGCTCCTATCTATTGCTCATCTGTAGGGGCAGGTTAAACTCTTCCGGGTTGATCACCTGAAGGGCTTTGCGGTGGAACAGCTATGCACTGGAAAGGTTTATTTATGCAGCTGTAAGAACCCTGGTTGTGGGAGTGGCATTCTGAAAATCAGATTAAACTTGGGGGGGAAAATGGTGATCTACAGTAAACAAAGTAGGAAGTCATCCTCCGCATGACACTAGTCAGCCCAGTTCCGTGTAGTGTTCTGTTGGGAGACCCATTCTGAAAAtagaaatgtttttgttgttgtgaagtggCGATTGTCACTCTGAAGGAATCCTCATCTGGTGTTAAAGGGTAGATAACATTGTGCAATAGTAATACTAGAGCTTagtatgaggttattttcctgcgtGTGTGGTGGGGTGGAACCGTGTTGAAGATCTTTCAGGGTGGAGAGAGTTCTTATCTGTGTCGTCAGCGATGGGCCACTGCCCGTGTCACATGCTGTCTCTGATTGGTGAGTTCGCCTCCAGCTGACGTGTTGGGAGCTATGGAGACTTTGCAATGTAGGGTGTAGTTACAGCAAGTGTGCAATTTGATCACTTTACAATGCAATTCTTACCTATAACCTTAACAATACGTAATGAAAGCAGAAATATAATGCAGAAGTAAGTGCATGTGAAGGATCATAGCAGTTGGCTCACTTGTGCAGGCTGAGAAGGTCACGATAGGATGTTGGATTTTTCTATGCGAGTCTTGAGTTGCCTACAATATGCTCAGAGACATTAAACTCCAGTGTTATAACCGCTAATTCAAACAGTTCCTTCTCTCCAAAGAAGCATTGATTCTTGTGTTTTATACCAGTATATCAAACGGCACTTTCACAAAACTATAATTGAAATGAATACAGTGTGGTTGTTTATATCATCTCCCAATACAGACTTTGAAAGGGATTTAAAAGTGTTACTGATATTGTACAATTTTCCCAGTTTCTGGTGTTCGGATATTGCTCCTCTGATTTCGTTTTTGATTGGAAGATGAAACCAAGGGTccagggcattgtcatgctcgTTTGTAAAAGGAGCAACATACCAGCTTTGTAGacttgtttttgttaatgttttaATCTCGTGTTCATTTTACCACAGTTTTTAATATATTCATGTGTATCATTCGTAATTTTGTTTCAATTATTCATTAAGCACAGGATTTGTATCAATCTTACACTATAGTATTTcaaaacatgtttatgttgtgcAATGTAAAAAAGAAAGATGTCTTCACCAAATATATGTTGGCGCTTGCAATCAGCCAAGAAAAGTGTGCAAAGCTAATTTAATAATGAAGCAACAGAATGGATAAACA

Function

NR:

description
E3 ubiquitin-protein ligase MARCH2

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006897 endocytosis biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10657 MARCH2; E3 ubiquitin-protein ligase MARCH2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603691.2 False 3957 mRNA 0.44 6 60944007 60951642
XM_021603692.2 True 3950 mRNA 0.44 6 60944007 60951642

Neighbor

gene id symbol gene type direction distance location
LOC110524230 hnrpm coding downstream 13344 60915017 ~ 60930663 (-)
timm44 LOC106613715 coding downstream 29726 60902398 ~ 60914281 (-)
LOC110524228 LOC106573568 coding downstream 59999 60861447 ~ 60884008 (-)
cers4a LOC106613711 coding downstream 215035 60695903 ~ 60728972 (-)
ndufa11 LOC106613708 coding downstream 261124 60678698 ~ 60682883 (-)
LOC110524236 rb11b coding upstream 1263 60952905 ~ 60966146 (-)
LOC110524237 LOC106613718 coding upstream 14758 60966400 ~ 60970979 (-)
pip5k1ca LOC106613719 coding upstream 21501 60973143 ~ 61053401 (-)
LOC110524239 LOC106573579 coding upstream 107307 61058949 ~ 61081864 (-)
arhgap45b LOC106613721 coding upstream 130996 61082638 ~ 61096386 (-)
G423394 NA non-coding downstream 6786 60937000 ~ 60937221 (-)
G423391 NA non-coding downstream 10959 60932799 ~ 60933048 (-)
G423384 NA non-coding downstream 42252 60901516 ~ 60901755 (-)
G423360 NA non-coding downstream 88084 60855260 ~ 60855923 (-)
G423435 NA non-coding upstream 79629 61031271 ~ 61093488 (-)
G423495 NA non-coding upstream 294916 61246558 ~ 61246791 (-)
G423497 NA non-coding upstream 296926 61248568 ~ 61248887 (-)
G423509 tm6s1 non-coding upstream 312249 61263891 ~ 61265340 (-)
G422347 NA other downstream 842951 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1805750 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1907708 59026103 ~ 59036299 (-)
G420421 NA other downstream 2529864 58413128 ~ 58414143 (-)
G420193 NA other downstream 2829947 58112387 ~ 58114060 (-)
G424474 NA other upstream 665228 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 698325 61649967 ~ 61651775 (-)
G424502 NA other upstream 707391 61659033 ~ 61659585 (-)
G424649 NA other upstream 936556 61888198 ~ 61927422 (-)

Expression


Co-expression Network