LOC110524236 (rb11b)


Basic Information

Item Value
gene id LOC110524236
gene name rb11b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60952905 ~ 60966146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603696.2
CAAAGCAGTTGTCCCTCAGCTCACGTGCGTATTCCTTCCCGAGACTACTTTACTGCATTTATGAGTCCGGAGACTTTCCTTGGCAGTCTAATATTTTCATAAAGTGGGAATCGTCAAAATGGGAACCCGAGACGACGAATACGACTATCTATTCAAAGTGGTGCTGATCGGAGACTCTGGTGTGGGGAAGAGTAACCTACTGTCCCGTTTCACACGGAATGAGTTCAACCTGGAGAGCAAAAGCACCATCGGTGTGGAATTCGCCACCCGCAGCATCCAGGTGGACGGCAAGATGATAAAGGCCCAGATCTGGGATACAGCTGGACAGGAGCGCTACAGAGCCATCACCTCAGCGTACTACCGGGGGGCGGTGGGGGCTCTCCTAGTGTACGACATTGCCAAGCATCTAACCTATGAAAATGTGGAGCGCTGGCTGAAGGAGCTGAGGGATCATGCTGATAACAACATTGTCATCATGCTGGTGGGCAACAAGAGTGACCTGCGCCACCTCAGGGCAGTGCCCACAGACGAGGCTCGCGCCTTCGCAGaAAAGAATACGCTATCATTTATTGAGACCTCCGCTTTGGACTCCACTAATGTAGAAGAGGCGTTCAAGAACATCCTCACAGAAATCCACCGAATCGTATCACAGAAGCAGATAGCTGACAGATCAGCACATGACGAGTCTCCAGGCAACAATGTAGTGGACATCAGTGTCCCCCCCACCACTGATGGGCAGAAAAACAAACTACCATGCTGCCAAAGCCTGTGACCCGCAATACCACCTTCCAACCCCCACCCCTCACTCATCTTTCGTTTGTCCTGGTTGTTGAACTGCTGCGGTCTCTATTCCGCCATGTGTTTTAGAAGTCTCCTAGAAAATCAGACTTTCTAGATAAGTCCTTTCTCCCTTTTTTGTCTGTATGCTATCTTTTTATAACCTCAAAGCTCATGTCTTTTACCAAATGATAGACAAAAAtcctattttgaattcaggctctgATCGTGTGACCCAATCCTGTAGAAGGAATGGTGAGAGATCAGTTTGTCCTGTGCTTCTGGTTGCCTTGCTGCTGTCCTCAGTCCCTGTCCTGAGTGTGGCATGAAAGGAGCAAGAACAGAGACCTGGGGTAGTGACTGACTTGGGATGATATTAAGTGGGGGGGCTTTGTTACGCCTATGGTTCAAAGAGATGCCAAAGTGTGTCTGTGAACATTTTCAATCTAAAATAATCTAATCTAAATAGTAAACTTGCAGAGACACTTTTGTCAAAATTTGACTTTTTCCAATTGTATCATGCACTTTGTTTCACTATTGTTAGATGCAgtcactgtgttctctctgtaaTTAGATCATACTATGAATTGATCCAGTAGTCCAACTACAGTTGAAAGCAAACATAAATATGCATCTTGTGTCCTGCCAATCATTTCAATGGAACTCACCATGTAAAATCAACAACTAATTCCGAAGGACTAACATCTTTTAAATGACAACACTTAGCTTGCTTGGTTTGAGAGGGGCCCCCCTGATATACAGTAACACTCAATATCTAGGGTGGAGGATGTTTTCATTGCTTCACTCTACTCTAACCATTTTGCCTCTAAAATGTTGTTGACAGTGGAATTTTTAAGAAAGGAAGGTTGCTTTTGTATGGTTGGCTATAATGCCTTATGTCTCTCCTTTCTAGTAGATTTGCCTGTATGTAATTTTCTGTCACAGGTCCAACTTTTAAATCAATAAACATGTGTTAATTTGCCTTTTCATCAGGTAGCATTGAAATGGAAATAAACCAAATGAATGTCACTTGTTGACAGACATTTTCTTTGAACATCAA

Function

NR:

description
Ras-related protein Rab-11B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07905 RAB11B; Ras-related protein Rab-11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603696.2 True 1837 mRNA 0.44 5 60952905 60966146
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110524231 LOC106613717 coding downstream 1263 60944007 ~ 60951642 (-)
LOC110524230 hnrpm coding downstream 22242 60915017 ~ 60930663 (-)
timm44 LOC106613715 coding downstream 38624 60902398 ~ 60914281 (-)
LOC110524228 LOC106573568 coding downstream 68897 60861447 ~ 60884008 (-)
cers4a LOC106613711 coding downstream 223933 60695903 ~ 60728972 (-)
LOC110524237 LOC106613718 coding upstream 254 60966400 ~ 60970979 (-)
pip5k1ca LOC106613719 coding upstream 6997 60973143 ~ 61053401 (-)
LOC110524239 LOC106573579 coding upstream 92803 61058949 ~ 61081864 (-)
arhgap45b LOC106613721 coding upstream 116492 61082638 ~ 61096386 (-)
tjp3 LOC106613722 coding upstream 138611 61104757 ~ 61131881 (-)
G423394 NA non-coding downstream 15684 60937000 ~ 60937221 (-)
G423391 NA non-coding downstream 19857 60932799 ~ 60933048 (-)
G423384 NA non-coding downstream 51150 60901516 ~ 60901755 (-)
G423360 NA non-coding downstream 96982 60855260 ~ 60855923 (-)
G423435 NA non-coding upstream 65125 61031271 ~ 61093488 (-)
G423495 NA non-coding upstream 280412 61246558 ~ 61246791 (-)
G423497 NA non-coding upstream 282422 61248568 ~ 61248887 (-)
G423509 tm6s1 non-coding upstream 297745 61263891 ~ 61265340 (-)
G422347 NA other downstream 851849 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1814648 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1916606 59026103 ~ 59036299 (-)
G420421 NA other downstream 2538762 58413128 ~ 58414143 (-)
G420193 NA other downstream 2838845 58112387 ~ 58114060 (-)
G424474 NA other upstream 650724 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 683821 61649967 ~ 61651775 (-)
G424502 NA other upstream 692887 61659033 ~ 61659585 (-)
G424649 NA other upstream 922052 61888198 ~ 61927422 (-)

Expression

LOC110524236(rb11b) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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LOC110524236(rb11b) Expression in each Bioproject

Bar chart with 21 bars.
LOC110524236(rb11b) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network