LOC110524237 (LOC106613718)


Basic Information

Item Value
gene id LOC110524237
gene name LOC106613718
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60966400 ~ 60970979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603697.2
tatttatttaattttagaataaggccataACTGTGCGggcctgggcaactccagtcctcgtgTCAGACTTTTGCCCCAGTCACAGCtaatgatcttcagtttagaatgcaattagtttaaatcagatgtgtttgctagggatgggggaaaagtctatcaggccctcgaggactggaattaCCCGGGTCtgcgtaacgtaacaaaatgtggaaaaagtgaaggagcctgaatactttccgaacgcactgtaCATATAGAACCAAACGGAAGTAAACTGATTAAACGGAATCAAACTGGGAGCGACGTACCTGAATTTgttcaatagaaactctcgttttccGTTTGGAATTAActgtttctgttgcaaaacgtttagcAACAGACCCCAGCAGCCCTGCGTTCCTGAAGGGCGCTGTGTAAATCACGTGGGTCGCGCGTCAGCCATTCTACGTTTTCATTCCACTACATTCGGATCTACAAGAGGGCGGGAATGGTCGAATGGAATTATAGAATCATACGTCACGTTTCCTTGGAGAACAACATACATTTTGAAAAGTAGTGATATTTTAGTATCACTAGCGCATTTTGGaacttttttattttgtaaaaatgtggCTAATGTAGTCTAGCGAGCACATAATTTGTCTAACAATGACAATTGGAAGTATTCTATTTTAATCAAGCTATAGGGTTATTCACCCATTTTTGGCATGATGATGGACAACGGAGACTTCACTAACACGCTCCACACATTTGAGGACCTGCCTTGCAAGGGTCTTGGAGACAAAATGTCAAATGCAAGCAATAGTAGATGCTCAAGTCCAGCATATGGAGTTCCTAGTGATGAGGGAAATCAACCCAGTGAATCCCATTCCGATATAATAAGACAGCTTCATGATGAAATAGATCGGTccaaaatgtcatacaaagaagtAGAGGCTATGGTCCATGCCCACATGAagCCTATTTTGGATCAAATTCGTTCAGATGCATGTAAATTGGTGATTAAGTCATCAGCATTGGAGGATGGCTGTCACAGGAAAGACCAGCAGGACAGACACATTCTCTTACACATCCCCTCCCTCCAAGAGCTCCTTTTGAAATTAGCCTTTACAAAAAACTCAGATGACGTGCAGAGTTACCTGATCTCGTCCGACCGAACATTCCTACTCTCTGAGAACGATGCCCTGAAAATGGAGCTCAGAGATGCCAAGTCTCGACATGAGACTGTGATGAAGAGCCTGCacctttcccttcactctgctgAACAAGAAAACAAGAGCTCCAAGCTCACACTCCAGCAGAACCTCAGACTTTCTGAGGGCAAGGTAAACTCCATGGAGCAGAAACTCAAGGAGTTTGAAGGACAGGTCCTGTCCTTGCAGCACAATCTCATGGCCTCTAATGAAAGGACTCAGAGTCTGCAGAAAACCCTCCGGTTCTCTGACAATAGGCTCCAGTCCCTTCAGCAGGACCTGGACGAGTCTGAGAAGAGAGGCCAAAGCCTGCAGAAAAGCCTTGGGGACTCccaagagaggaaccagactctgcAACATAACCTGGCTTCCTTTGAGAAGAACAACCAGTGCCTTAGCCAGAACCTTAGCGCTTCAGAGAAAAAGGTTGACTTCCTTCAGCACAGTAACTGGAAGTTTGAGGAGAGGGTGAAGTCTCTGCAGCAGACCCTCGGCTCTTCTGAGGGAAAGGTCTCTCTCCTGCAGCAGAGTCTGAAGTCTTCAGAGGAGAAGGTCTTATCCCTCCAACATGACCATTGGGCCTTGGATGAGAGAGCCCAGTCCCTGCAGCAGAGCCTCAACTCCTCAGAGGAAAAGCTCCAGTCGACACAACATTGGCTCAAGGCTACAGATGAGAAAGCCAAAGCCCTGAAGGAAGCTCTCAGATCTTCAGAGGAGAAGACCCAGTCCTTACAGGAGGCCCTGGGGGTCAGTGAGAGCTGGATCAGGGCAACCAAGGCCCAGCAGCAGTCTCTGGAGAAATGCaaagaggagctggaggagaggatcaagGGTTTGATGCAGACTCTCCGGGCCACTGAGGGGGAGCACCACAGCACAGTGCAGGACCTGCAGGTGGGTCTTCAGAGTGCCAGGGAGAAGGTGGAGATTCTGCAGGATGCACTGAACAGGACTGAGTCTGGGCATGTGAAGGAGGTGGGGCAGCTTCAAGAGAAACTGAACAGAGCTGCAAAAAAATTGTCTTCAAGAGAGCAGGCGCTGCACAGCCAGATTGCTGCCTTGAACACTAAATTGCTGGAGGAGCAGTCAAAGGCAAGCAAGGACCTTGAAAGATCCATTAGATATGAGAAAGAGCTGCAAGACACTGTCAAGATTCTCAGGAAGAAGCTGAGAACTCAAACTGAGGAGAAGGGGTTTGCTCTGAATAGCCTGAGAATGCGTCAGAAGGACCTGGCGGATGTACAGCGCCACCTACAGGCAGACCTGCTGAGGTGCAGCCAGGTCTGTGGCAAGGAGAAGGGACCGCAGTACTTAGCCCCCCGCAAGGGTGGCCTGAAGGAGGAGTTCTTCCACCTGAGAACCAGCCTGCACTCCGTCCTGGAGAAGGAGGCTGGGAGAGACGACCCAGGGAGGCAAGACTGGGTGCAGGTGTTAGACGAGATCAAGGACTGGGAGAAAAGGGCAGAAAAACAGGTGGACAGTTTAGATTCTCTGCAGAGTTCCCAGCTGCTGGAAGAAGGAGGGGATGAAAGGTACCAATATAGAGCAGGAGCATGGAAAAGTGGAGCACCACCCTCCATCCGTTCCCCTTCTGCTGTGACGATTTCCCAGAGGAACCTCTCTACGAGGCCTGCTTCTCCATATCCCTATGGGCAATATCTAGGGCAGGAGAAGAGGCTTGGGTCTAGCTCCCTCCGTGGCTTGAATGATTCTGAAGGCATGCAGCATTTACTAACAATCCAAAAAAGACTGAAGAACCTCCAGTCAGTTGAATTCCAGAGGAATATCAAGGGTTTACTCCGGACCTCATAGCACCAGCAGCGAGACCCTTTTGGACCATTGAATTACTTTACAACTGAGGGAAACCCCATTTTAAAATACCAGACAATTTGAGAATTGTTAAAATAATCTGAATTCATGGCAAATAAATCATTGGTTCTTGTC
>XM_036978007.1
tatatttatttaattttagaataaggccataACTGTGCGggcctgggcaactccagtcctcgtgTCAGACTTTTGCCCCAGTCACAGCtaatgatcttcagtttagaatgcaattagtttaaatcagatgtgtttgctagggatgggggaaaagtctatcaggccctcgaggactggaattaCCCGGGTCtgcgtaacgtaacaaaatgtggaaaaagtgaaggagcctgaatactttccgaacgcactgtaCATATAGAACCAAACGGAAGTAAACTGATTAAACGGAATCAAACTGGGAGCGACGTACCTGAATTTgttcaatagaaactctcgttttccGTTTGGAATTAActgtttctgttgcaaaacgtttagcAACAGACCCCAGCAGCCCTGCGTTCCTGAAGGGCGCTGTGTAAATCACGTGGGTCGCGCGTCAGCCATTCTACGTTTTCATTCCACTACATTCGGATCTACAAGAGGGCGGGAATGGTCGAATGGAATTATAGAATCATACGTCACGTTTCCTTGGAGAACAACATACATTTTGAAAAGTAGTGATATTTTAGTATCACTAGCGCATTTTGGaacttttttattttgtaaaaatgtggCTAATGTAGTCTAGCGAGCACATAATTTGTCTAACAATGACAATTGGAAGTATTCTATTTTAATCAAGCTATAGGGTTATTCACCCATTTTTGGCATGATGATGGACAACGGAGACTTCACTAACACGCTCCACACATTTGAGGACCTGCCTTGCAAGGGTCTTGGAGACAAAATGTCAAATGCAAGCAATAGTAGATGCTCAAGTCCAGCATATGGAGTTCCTAGTGATGAGGGAAATCAACCCAGTGAATCCCATTCCGATATAATAAGACAGCTTCATGATGAAATAGATCGGTccaaaatgtcatacaaagaagtAGAGGCTATGGTCCATGCCCACATGAagGATGACGTGCAGAGTTACCTGATCTCGTCCGACCGAACATTCCTACTCTCTGAGAACGATGCCCTGAAAATGGAGCTCAGAGATGCCAAGTCTCGACATGAGACTGTGATGAAGAGCCTGCacctttcccttcactctgctgAACAAGAAAACAAGAGCTCCAAGCTCACACTCCAGCAGAACCTCAGACTTTCTGAGGGCAAGGTAAACTCCATGGAGCAGAAACTCAAGGAGTTTGAAGGACAGGTCCTGTCCTTGCAGCACAATCTCATGGCCTCTAATGAAAGGACTCAGAGTCTGCAGAAAACCCTCCGGTTCTCTGACAATAGGCTCCAGTCCCTTCAGCAGGACCTGGACGAGTCTGAGAAGAGAGGCCAAAGCCTGCAGAAAAGCCTTGGGGACTCccaagagaggaaccagactctgcAACATAACCTGGCTTCCTTTGAGAAGAACAACCAGTGCCTTAGCCAGAACCTTAGCGCTTCAGAGAAAAAGGTTGACTTCCTTCAGCACAGTAACTGGAAGTTTGAGGAGAGGGTGAAGTCTCTGCAGCAGACCCTCGGCTCTTCTGAGGGAAAGGTCTCTCTCCTGCAGCAGAGTCTGAAGTCTTCAGAGGAGAAGGTCTTATCCCTCCAACATGACCATTGGGCCTTGGATGAGAGAGCCCAGTCCCTGCAGCAGAGCCTCAACTCCTCAGAGGAAAAGCTCCAGTCGACACAACATTGGCTCAAGGCTACAGATGAGAAAGCCAAAGCCCTGAAGGAAGCTCTCAGATCTTCAGAGGAGAAGACCCAGTCCTTACAGGAGGCCCTGGGGGTCAGTGAGAGCTGGATCAGGGCAACCAAGGCCCAGCAGCAGTCTCTGGAGAAATGCaaagaggagctggaggagaggatcaagGGTTTGATGCAGACTCTCCGGGCCACTGAGGGGGAGCACCACAGCACAGTGCAGGACCTGCAGGTGGGTCTTCAGAGTGCCAGGGAGAAGGTGGAGATTCTGCAGGATGCACTGAACAGGACTGAGTCTGGGCATGTGAAGGAGGTGGGGCAGCTTCAAGAGAAACTGAACAGAGCTGCAAAAAAATTGTCTTCAAGAGAGCAGGCGCTGCACAGCCAGATTGCTGCCTTGAACACTAAATTGCTGGAGGAGCAGTCAAAGGCAAGCAAGGACCTTGAAAGATCCATTAGATATGAGAAAGAGCTGCAAGACACTGTCAAGATTCTCAGGAAGAAGCTGAGAACTCAAACTGAGGAGAAGGGGTTTGCTCTGAATAGCCTGAGAATGCGTCAGAAGGACCTGGCGGATGTACAGCGCCACCTACAGGCAGACCTGCTGAGGTGCAGCCAGGTCTGTGGCAAGGAGAAGGGACCGCAGTACTTAGCCCCCCGCAAGGGTGGCCTGAAGGAGGAGTTCTTCCACCTGAGAACCAGCCTGCACTCCGTCCTGGAGAAGGAGGCTGGGAGAGACGACCCAGGGAGGCAAGACTGGGTGCAGGTGTTAGACGAGATCAAGGACTGGGAGAAAAGGGCAGAAAAACAGGTGGACAGTTTAGATTCTCTGCAGAGTTCCCAGCTGCTGGAAGAAGGAGGGGATGAAAGGTACCAATATAGAGCAGGAGCATGGAAAAGTGGAGCACCACCCTCCATCCGTTCCCCTTCTGCTGTGACGATTTCCCAGAGGAACCTCTCTACGAGGCCTGCTTCTCCATATCCCTATGGGCAATATCTAGGGCAGGAGAAGAGGCTTGGGTCTAGCTCCCTCCGTGGCTTGAATGATTCTGAAGGCATGCAGCATTTACTAACAATCCAAAAAAGACTGAAGAACCTCCAGTCAGTTGAATTCCAGAGGAATATCAAGGGTTTACTCCGGACCTCATAGCACCAGCAGCGAGACCCTTTTGGACCATTGAATTACTTTACAACTGAGGGAAACCCCATTTTAAAATACCAGACAATTTGAGAATTGTTAAAATAATCTGAATTCATGGCAAATAAATCATTGGTTCTTGTC
>XM_036978008.1
tatatttatttaattttagaataaggccataACTGTGCGggcctgggcaactccagtcctcgtgTCAGACTTTTGCCCCAGTCACAGCtaatgatcttcagtttagaatgcaattagtttaaatcagatgtgtttgctagggatgggggaaaagtctatcaggccctcgaggactggaattaCCCGGGTCtgcgtaacgtaacaaaatgtggaaaaagtgaaggagcctgaatactttccgaacgcactgtaCATATAGAACCAAACGGAAGTAAACTGATTAAACGGAATCAAACTGGGAGCGACGTACCTGAATTTgttcaatagaaactctcgttttccGTTTGGAATTAActgtttctgttgcaaaacgtttagcAACAGACCCCAGCAGCCCTGCGTTCCTGAAGGGCGCTGTGTAAATCACGTGGGTCGCGCGTCAGCCATTCTACGTTTTCATTCCACTACATTCGGATCTACAAGAGGGCGGGAATGGTCGAATGGAATTATAGAATCATACGTCACGTTTCCTTGGAGAACAACATACATTTTGAAAAGTAGTGATATTTTAGTATCACTAGCGCATTTTGGaacttttttattttgtaaaaatgtggCTAATGTAGTCTAGCGAGCACATAATTTGTCTAACAATGACAATTGGAAGTATTCTATTTTAATCAAGCTATAGGGTTATTCACCCATTTTTGGCATGATGATGGACAACGGAGACTTCACTAACACGCTCCACACATTTGAGGACCTGCCTTGCAAGGATGACGTGCAGAGTTACCTGATCTCGTCCGACCGAACATTCCTACTCTCTGAGAACGATGCCCTGAAAATGGAGCTCAGAGATGCCAAGTCTCGACATGAGACTGTGATGAAGAGCCTGCacctttcccttcactctgctgAACAAGAAAACAAGAGCTCCAAGCTCACACTCCAGCAGAACCTCAGACTTTCTGAGGGCAAGGTAAACTCCATGGAGCAGAAACTCAAGGAGTTTGAAGGACAGGTCCTGTCCTTGCAGCACAATCTCATGGCCTCTAATGAAAGGACTCAGAGTCTGCAGAAAACCCTCCGGTTCTCTGACAATAGGCTCCAGTCCCTTCAGCAGGACCTGGACGAGTCTGAGAAGAGAGGCCAAAGCCTGCAGAAAAGCCTTGGGGACTCccaagagaggaaccagactctgcAACATAACCTGGCTTCCTTTGAGAAGAACAACCAGTGCCTTAGCCAGAACCTTAGCGCTTCAGAGAAAAAGGTTGACTTCCTTCAGCACAGTAACTGGAAGTTTGAGGAGAGGGTGAAGTCTCTGCAGCAGACCCTCGGCTCTTCTGAGGGAAAGGTCTCTCTCCTGCAGCAGAGTCTGAAGTCTTCAGAGGAGAAGGTCTTATCCCTCCAACATGACCATTGGGCCTTGGATGAGAGAGCCCAGTCCCTGCAGCAGAGCCTCAACTCCTCAGAGGAAAAGCTCCAGTCGACACAACATTGGCTCAAGGCTACAGATGAGAAAGCCAAAGCCCTGAAGGAAGCTCTCAGATCTTCAGAGGAGAAGACCCAGTCCTTACAGGAGGCCCTGGGGGTCAGTGAGAGCTGGATCAGGGCAACCAAGGCCCAGCAGCAGTCTCTGGAGAAATGCaaagaggagctggaggagaggatcaagGGTTTGATGCAGACTCTCCGGGCCACTGAGGGGGAGCACCACAGCACAGTGCAGGACCTGCAGGTGGGTCTTCAGAGTGCCAGGGAGAAGGTGGAGATTCTGCAGGATGCACTGAACAGGACTGAGTCTGGGCATGTGAAGGAGGTGGGGCAGCTTCAAGAGAAACTGAACAGAGCTGCAAAAAAATTGTCTTCAAGAGAGCAGGCGCTGCACAGCCAGATTGCTGCCTTGAACACTAAATTGCTGGAGGAGCAGTCAAAGGCAAGCAAGGACCTTGAAAGATCCATTAGATATGAGAAAGAGCTGCAAGACACTGTCAAGATTCTCAGGAAGAAGCTGAGAACTCAAACTGAGGAGAAGGGGTTTGCTCTGAATAGCCTGAGAATGCGTCAGAAGGACCTGGCGGATGTACAGCGCCACCTACAGGCAGACCTGCTGAGGTGCAGCCAGGTCTGTGGCAAGGAGAAGGGACCGCAGTACTTAGCCCCCCGCAAGGGTGGCCTGAAGGAGGAGTTCTTCCACCTGAGAACCAGCCTGCACTCCGTCCTGGAGAAGGAGGCTGGGAGAGACGACCCAGGGAGGCAAGACTGGGTGCAGGTGTTAGACGAGATCAAGGACTGGGAGAAAAGGGCAGAAAAACAGGTGGACAGTTTAGATTCTCTGCAGAGTTCCCAGCTGCTGGAAGAAGGAGGGGATGAAAGGTACCAATATAGAGCAGGAGCATGGAAAAGTGGAGCACCACCCTCCATCCGTTCCCCTTCTGCTGTGACGATTTCCCAGAGGAACCTCTCTACGAGGCCTGCTTCTCCATATCCCTATGGGCAATATCTAGGGCAGGAGAAGAGGCTTGGGTCTAGCTCCCTCCGTGGCTTGAATGATTCTGAAGGCATGCAGCATTTACTAACAATCCAAAAAAGACTGAAGAACCTCCAGTCAGTTGAATTCCAGAGGAATATCAAGGGTTTACTCCGGACCTCATAGCACCAGCAGCGAGACCCTTTTGGACCATTGAATTACTTTACAACTGAGGGAAACCCCATTTTAAAATACCAGACAATTTGAGAATTGTTAAAATAATCTGAATTCATGGCAAATAAATCATTGGTTCTTGTC
>TU479730
CCAGCCTGCACTCCGTCCTGGAGAAGGAGGCTGGGAGAGACGACCCAGGGAGGCAAGACTGGGTGCAGGTGTTAGACGAGATCAAGGACTGGGAGAAAAGGGCAGAAAAACAGGTGGACAGTTTAGATTCTCTGCAGAGTTCCCAGCTGCTGGAAGAAGGAGGGGATGAAAGGTACCAATATAGAGCAGGAGCATGGAAAAGTGGAGCACCACCCTCCATCCGTTCCCCTTCTGCTGTGACGATTTCCCAGAGGAACCTCTCTACGAGGCCTGCTTCTCCATATCCCTATGGGCAATATCTAGGGCAGGAGAAGAGGCTTGGGTCTAGCTCCCTCCGTGGCTTGAATGATTCTGAAGGCATGCAGCATTTACTAACAATCCAAAAAAGACTGAAGAACCTCCAGTCAGTTGAATTCCAGAGGAATATCAAGGGTTTACTCCGGACCTCATAGCACCAGCAGCGAGACCCTTTTGG

Function

NR:

description
interaptin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603697.2 False 3140 mRNA 0.48 10 60966400 60970977
XM_036978007.1 False 2980 mRNA 0.48 9 60966400 60970979
XM_036978008.1 False 2791 mRNA 0.49 7 60966400 60970979
TU479730 True 475 lncRNA 0.52 4 60966509 60967764

Neighbor

gene id symbol gene type direction distance location
LOC110524236 rb11b coding downstream 254 60952905 ~ 60966146 (-)
LOC110524231 LOC106613717 coding downstream 14758 60944007 ~ 60951642 (-)
LOC110524230 hnrpm coding downstream 35737 60915017 ~ 60930663 (-)
timm44 LOC106613715 coding downstream 52119 60902398 ~ 60914281 (-)
LOC110524228 LOC106573568 coding downstream 82392 60861447 ~ 60884008 (-)
pip5k1ca LOC106613719 coding upstream 2164 60973143 ~ 61053401 (-)
LOC110524239 LOC106573579 coding upstream 87970 61058949 ~ 61081864 (-)
arhgap45b LOC106613721 coding upstream 111659 61082638 ~ 61096386 (-)
tjp3 LOC106613722 coding upstream 133778 61104757 ~ 61131881 (-)
LOC110524243 LOC106613723 coding upstream 168340 61139319 ~ 61242006 (-)
G423394 NA non-coding downstream 29179 60937000 ~ 60937221 (-)
G423391 NA non-coding downstream 33352 60932799 ~ 60933048 (-)
G423384 NA non-coding downstream 64645 60901516 ~ 60901755 (-)
G423360 NA non-coding downstream 110477 60855260 ~ 60855923 (-)
G423435 NA non-coding upstream 60292 61031271 ~ 61093488 (-)
G423495 NA non-coding upstream 275579 61246558 ~ 61246791 (-)
G423497 NA non-coding upstream 277589 61248568 ~ 61248887 (-)
G423509 tm6s1 non-coding upstream 292912 61263891 ~ 61265340 (-)
G423510 NA non-coding upstream 294831 61265810 ~ 61266048 (-)
G422347 NA other downstream 865344 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1828143 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1930101 59026103 ~ 59036299 (-)
G420421 NA other downstream 2552257 58413128 ~ 58414143 (-)
G420193 NA other downstream 2852340 58112387 ~ 58114060 (-)
G424474 NA other upstream 645891 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 678988 61649967 ~ 61651775 (-)
G424502 NA other upstream 688054 61659033 ~ 61659585 (-)
G424649 NA other upstream 917219 61888198 ~ 61927422 (-)

Expression


Co-expression Network