tm6sf2 (tm6s1)


Basic Information

Item Value
gene id tm6sf2
gene name tm6s1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61248572 ~ 61265206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603715.2
AATAGATGGCGATTTGGTCATTCGACTGCAGGAAAGGATTTTAATGTGTTCATCTCAAATGAGTTCAAACTAAATAGAGAGTAGGCCTAATGTAGTAGACCTAGTACAATGTATAACCCATAAACCCACACATTTGCTTAACACACACGAATGTGACTTAACCACACATTGCTTAACACACATGAATGTGAGTTAAGAGGCACGTGAATTACCCCATCTAATGCGATTTATATAAATCTCTGACGAACCCGAATTGCATAACTTGCCCCAAAAGCTCCTAGTTCATTATTTCCCTGTAAATATGCTGTGTCTGCCCGAGGCCAACCATCATTTCAACAATCCACAGGCCAAAACAGTGGCCAGACGTGGTCGGTGCTAGTGATTCTCCAGGGACCCTTTGGCTGTTTCCTCTGCagttgaagagatggagagattagTTTTCTTGTTTTCTCTGACTGCCCTTGTTGTCCTTCACTGCATGAACACCACTCCAGAGTTCCAAGAGCCTGTTGTGATACTGCAGATTGGTATTgcagtgttggtggtggtgtggttcTTCTACTTCCTTATCACCCGACGCAGCCCTCCCAAAGACACCCTTTTCTATGTGTTTGCTGAGTTTTCCTTCACTTGTGTCATTGACCTTGTGAGTGCTATGGAACATGATGGTTTTATTTCCGGGTTTATGGAATTCTACCAGAAAACGGGAGAGCCCTATCTGGGTACAGCCTATGCCATCATGATGTGCTACTGGGATGGAATAGTGCATTTCATCATGTACCTCATGATGATACAGCGCTTATGGAACAGCAAGTCTTACCGCACCCTGGGTCTCTTCTGGGCTGGATCGTTGTTTGCCAACATGAGTGTCTTTGTGACAGGAATTGTTGTAGGTAAATTTGGATCAGATATCCGTCCCGCCTTCTGGCTCAACATGCCCTTCCTAATGCTTCCAATATGGGGTGCAATCAAGCTGTTCAACCAGCCCAAGAATGGGCCAACCCTCGGTGGATACAGGGCCCACTATGATCAGAGTTTTAATCTCATCTGGCGCCCTACAGACCTTCTCCTGGTGCTGCTGCTACTGGGGGCCATGGCCTTCACTCTCTTCAGGGGCTTGGTAGCTCTTGACTCCCCTCTAGAGGCCTGTACCATCTACCTCCGCCAGTACGAGCCCTATCTGAAGGACCCGGTGGGCTACCCCAAGGTTATGATGTTGCACTTCCTGTTCTACATGCTGCCTATGCTGGGTGCCTTCATCTACGGACTCGTAGTGCCTGGCTGCACCTGGATGCCCGACTGGACTGTATTTGTTGCTGGAGGCGTCGCCCAGtgtcAGTGGGCCCACATTGGGGCATCCCTCCACCCACGTACAGTGGCCCCATTCCGGATCCCAGACGAGGCTTTCCTGGCTGTCCTGGCAGCCAACCTGCTGTACGCTGTGATCCCCTCACTCATCGCCATGCGCTGCACCAGTAACACCAACTTCTTCTTGACCGTCACTAAACTTCCTGGGATGGAGGGGATGCCCTGGGTTCCTGATGCTGACACCCTAGTCGAGAAGAAACACAATTAAAGTTTACATACTAATAAAGTTACCAATAAAGATATGCAAATAAGTG

Function

NR:

description
transmembrane 6 superfamily member 1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603715.2 True 1622 mRNA 0.49 11 61248572 61265206

Neighbor

gene id symbol gene type direction distance location
LOC118964633 polr2e coding upstream 167565 61077504 ~ 61081007 (+)
LOC110524234 LOC106613716 coding upstream 306190 60939330 ~ 60942382 (+)
LOC110524227 fbn3 coding upstream 387201 60770756 ~ 60861371 (+)
LOC110524226 LOC106573564 coding upstream 552668 60694220 ~ 60695905 (+)
LOC110524224 LOC106613709 coding upstream 555809 60666192 ~ 60692763 (+)
hapln4 hapln4 coding downstream 2009 61267215 ~ 61285666 (+)
nr2c2ap nr2c2ap coding downstream 325397 61590603 ~ 61599332 (+)
LOC110524248 LOC106613729 coding downstream 371898 61637104 ~ 61655195 (+)
LOC110524251 LOC106613732 coding downstream 521241 61786447 ~ 61793643 (+)
gatad2ab NA coding downstream 543676 61808882 ~ 61840823 (+)
G422978 NA non-coding upstream 57107 61161197 ~ 61191465 (+)
G422951 NA non-coding upstream 141630 61106216 ~ 61106942 (+)
G422886 NA non-coding upstream 233626 61013149 ~ 61014946 (+)
G422858 NA non-coding upstream 260312 60978012 ~ 60988260 (+)
G422861 NA non-coding upstream 276388 60971957 ~ 60972184 (+)
G423541 NA non-coding downstream 24568 61289774 ~ 61290244 (+)
G423548 NA non-coding downstream 34434 61299640 ~ 61345067 (+)
G423600 NA non-coding downstream 140871 61406077 ~ 61472572 (+)
G423629 LOC106613725 non-coding downstream 177903 61443109 ~ 61443960 (+)
G423796 NA non-coding downstream 264695 61529901 ~ 61530115 (+)
G420634 NA other upstream 2304355 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2831796 58411240 ~ 58418268 (+)
G419452 NA other upstream 3348924 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3881235 57352343 ~ 57367627 (+)
G423922 NA other downstream 456331 61721537 ~ 61722024 (+)
G424079 NA other downstream 840317 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 1017946 62283054 ~ 62327772 (+)
G425224 NA other downstream 1779884 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 2411208 63676409 ~ 63684848 (+)

Expression


Co-expression Network