trnaa-agc-3


Basic Information

Item Value
gene id trnaa-agc-3
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61266697 ~ 61266769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaa-agc-3
ggggaattagctcaaatggtagagcgctcgcttagcatgcgagaggtagcgggatcgatgcccgcattctcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-agc-3 True 73 mRNA 0.59 1 61266697 61266769

Neighbor

gene id symbol gene type direction distance location
LOC110524243 LOC106613723 coding downstream 24691 61139319 ~ 61242006 (-)
tjp3 LOC106613722 coding downstream 134816 61104757 ~ 61131881 (-)
arhgap45b LOC106613721 coding downstream 170311 61082638 ~ 61096386 (-)
LOC110524239 LOC106573579 coding downstream 184833 61058949 ~ 61081864 (-)
pip5k1ca LOC106613719 coding downstream 213296 60973143 ~ 61053401 (-)
LOC110522983 LOC106613725 coding upstream 37344 61304113 ~ 61511078 (-)
LOC110524247 LOC106613727 coding upstream 351218 61617987 ~ 61622355 (-)
LOC110524249 LOC106613730 coding upstream 393380 61660149 ~ 61679106 (-)
LOC110524252 LOC106613733 coding upstream 496349 61763118 ~ 61786542 (-)
tssk6 LOC106613736 coding upstream 574792 61841561 ~ 61842727 (-)
G423510 NA non-coding downstream 649 61265810 ~ 61266048 (-)
G423509 tm6s1 non-coding downstream 1357 61263891 ~ 61265340 (-)
G423497 NA non-coding downstream 17810 61248568 ~ 61248887 (-)
G423495 NA non-coding downstream 19906 61246558 ~ 61246791 (-)
G423435 NA non-coding downstream 173209 61031271 ~ 61093488 (-)
G423534 hapln4 non-coding upstream 16794 61283563 ~ 61285664 (-)
G423767 NA non-coding upstream 229226 61495995 ~ 61496241 (-)
G423794 NA non-coding upstream 261762 61528531 ~ 61528739 (-)
G424412 NA non-coding upstream 266061 61532830 ~ 61595934 (-)
G424462 NA non-coding upstream 333985 61600754 ~ 61601112 (-)
G422347 NA other downstream 1165641 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 2128440 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 2230398 59026103 ~ 59036299 (-)
G420421 NA other downstream 2852554 58413128 ~ 58414143 (-)
G424474 NA other upstream 350101 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 383198 61649967 ~ 61651775 (-)
G424502 NA other upstream 392264 61659033 ~ 61659585 (-)
G424649 NA other upstream 621429 61888198 ~ 61927422 (-)
G424678 NA other upstream 731757 61998526 ~ 62001309 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnaa-agc_30 NA non-coding NC_053133.1 CM020930.1 15645358 ~ 15645430 (-)
striped catfish (Pangasianodon hypophthalmus) trnaa-agc_16 NA coding NC_047616.1 CM018562.1 18379942 ~ 18380014 (+)
tiger barb (Puntius tetrazona) trnam-cau_86 NA misc NC_056707.1 CM032076.1 5440197 ~ 5440268 (+)
tiger barb (Puntius tetrazona) trnaa-agc_29 NA coding NC_056722.1 CM032091.1 19503381 ~ 19503453 (+)
mexican tetra (Astyanax mexicanus) trnaa-agc_16 NA coding NC_035910.1 CM008313.1 6960136 ~ 6960208 (+)
mexican tetra (Astyanax mexicanus) trnaa-agc_30 NA misc NW_019171985.1 APWO02001583.1 114541 ~ 114613 (-)