hapln4 (hapln4)


Basic Information

Item Value
gene id hapln4
gene name hapln4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61267215 ~ 61285666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978014.1
GAAAATGTGTGAACTGCGGAACAGCCCAACTAGCCCAGTCCTGCACAGAGTAAGCAGTTCCCTTGCACTGCCAAAATCAAACAGCAATACGACAGGACACGGCAGGCTAACTGCAGGATAGAGGGTTATGAGTCAAGTATTGCACCATATCCATAACAGCCCAACTGGAACAAACGACATACGGTCTATCTAACTTCAGACAGACAGTATTCTTGAAGATATAATGCTCTGCTCACAGCCCCTGTCCTTGGGGACAGTGACCTGCTTGGTCCTAATCTTTGGCCTCTATGCGACCTCCCTCTCTACCGATGccgagaagggaaggaggaaagtTGTTCATGTACTCGAGGATGACACCGGGGCAGTGATCGTTCAGACCGCCCCCGGTAAAGTGATCACCCACCGGGGAGGCTCCATCACCCTGCCCTGCCGCTACCACCACGAACCCGAGAGCTCCGACCCCAACCGCATCCGCATCAAGTGGACCAAGGTGACGGACGCGCTGGTGTTTGAGGATGTGTTCGTTGCACTGGGCCTCCAGCAGAGGTTGTTTGGGTCGTATCGGGGTCGTGTGTCCCTGGAGAAAAACGGACCGGGGGACGCCTCGGTCATCATCCACAATGTCACCTTGGAGGACTACGGACGCTACGAGTGTGAGGTTACCAACGACATGGAGGACGATACGGGATTCGTCAACCTCGATCTTGAAGgtgTGGTGTTCCCCTACTATCCCCGGGTGGGGCGCTACAAGCTCAACTACCACCAGGCTGAGGACGTGTGTAAGGAGCAGGATGCCATCCTGGCCTCCCATGCCCAGCTCCACAAGGCCTGGTTGGAAGGACTGGACTGGTGCAACGCTGGCTGGCTGGAGGACGGCTCCGTCCAGTACCCCATCTCCCACCCCCGGGACCAGTGTGGCCGCAAGGACACCGCCGCAGGGGTACGCAACTACGGCTACAGACACAAAGAGGATGAGCGCTATGATGCCTTCTGTTTTACCTCCAACCTCAATGgtaaGGTGTATTTCCTGAAGCGCTTTAAGAAGGTGAATTATTCTGAAGCAGTGAAGGCGTGCGTTCGTGATGGCTCCGTGGTGGCCAAGACGGGCCAGCTCTACGCTGCCTGGAAGATCCAGCTGCTGGACCGCTGTGAAGCTGGCTGGCTGGAGGACGCAAGCATCCGTTACCCCATCGTCAACCCACGTACCCGCTGCGGCGGGCCCCAACCGGGAGTCCGCCACCTGGGCTTCCCTGACCTGAAGTTCCGCCTCTACGGGGTCTACTGCTTCCGCAAGAATGAAGAGAGTGTTAATGGGGATGTGGTGAAGTCGACCCAGGGCCCAAGGAAGAGCAGCAAGGACATCCCCATGAACACCACCTCCACCAGAaccatctagagagagagagactgagaggagggTTAAGATCACTGCCTGTACAACATAGCTCCATCCATTGCTTTAACTTAACAACATGGATAAACATCACTGACAACACATGCTAATTTGCAGGATTCACCAGCGAGGGAAAGCAACTGCTTTGTTCAATAAGGTGCGGAATCTTTATCTCTAGGATTTCTCCTGTCTGGTGTTAAACGAGGTGAAAGTTTGTTGAGAGCGTTCCGTGCGCCTTTCACTGTCTCAGAGAGGCTTAGCTAGTAACTGCAGCTGATCATAATTTCTCAGGCACATCAAGATTGGAAAGCCTTTCATTAAACAACTCCATAGTTGACTATGTGTCTATTGGAGGCATGGAGAGAGGCCACAAGCATGATGGGGTCTCAGACTCCACAGTGTGTTCTGGTCTCAATGTGGCTTCATTTGCAGAGAAAAAGGCCCTTTGCGAGAGGCACTCGACTTCAAGCAGTGCCAGCCGGAGAGAGTCATATTAATTAGTGTGcagtacagacagagacagaaagacagagataatTTACTATGTCTGTCTGAGTGTAATGAATGTAGCACATTAAGAGATCCTCTCTCTCAGAGGCCTGATTAGCAGAGAATTATGATGAGCTTTAAAGCAGACTACTAACGCctgatcaatcaaatcaaatcaaatgtatttatatagcccttcgtacatcagtgctgtacagaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacattggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgaagggtggccagtccaTCTGTGAATGTTGCCAGTTGCCAGCATGATGCCCAAGCTTTGCCTGTCCTGGCAGGACACTGCTCAGAGGTGCCCTTTGAGTTTACTGCGCCCCCAGTCGCCTGCctctgggcacaaactggtttaATCAAttatgtttccatgtcatttcaacaacaatATGTAATGcaatgacgttgaatcaacgtgaaaACTGGTTAGATTTGGAAACGTCCTCAACGTAAGGGAATTctgtatttttttcacccaattTTGAACATAAATCCAATGACGTGTGATTTTGTGTTTATTTCACGTTAGTTgccaactcaaccaaatgtaaatcaaaactacacATTGAAATGGTGTTTGTGCCGAGTGAGCAGTTGCCATGTTTGAGTAGAGCCAATTATTAAACATTATTTACCTCAGTAACTAACTAAGTACTGGCATGCCATACCAGAGCTCAATAAACATAGTAGCGAATATTGCACTTAGATATATTTTATGACGAAATGGTTAGTCTATAGCAAGCATGTTATACCTGTATCTGGGGCTGAAGCTGAACTAACATAACTATGTTATAGCTGCTTTAATAGCTGCTTTAATAGCTGCTTTAATATCTGCTTTAATAGCTGCTTAATTACCTCATATTTCTATGCAGCCATAATTATCGATTACACTCTTTGTTCAATTGTGAAATAGCCCGATTTTAACTGTATTGATCATTATCTTGATGCATGAATGTATCTATAGTTAGGGCTATATGCTGACGCTGTGATACAAAAGTAACAAATGAGATCTTGACGTTGTTGTTAAGAAATTCTGATTCTGTGATATTCTGTCTTTGCATTTTCATCATCTCTACTGTGATATCCTAATAAACAAAACGAAATGAGA

Function

symbol description
hapln4 Predicted to enable hyaluronic acid binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human HAPLN4 (hyaluronan and proteoglycan link protein 4).

NR:

description
hyaluronan and proteoglycan link protein 4

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005540 hyaluronic acid binding molecular_function

KEGG:

id description
K06853 HAPLN4; hyaluronan and proteoglycan link protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978014.1 True 3126 mRNA 0.48 5 61267215 61285666

Neighbor

gene id symbol gene type direction distance location
tm6sf2 tm6s1 coding upstream 2009 61248572 ~ 61265206 (+)
LOC118964633 polr2e coding upstream 186208 61077504 ~ 61081007 (+)
LOC110524234 LOC106613716 coding upstream 324833 60939330 ~ 60942382 (+)
LOC110524227 fbn3 coding upstream 405844 60770756 ~ 60861371 (+)
LOC110524226 LOC106573564 coding upstream 571311 60694220 ~ 60695905 (+)
nr2c2ap nr2c2ap coding downstream 304937 61590603 ~ 61599332 (+)
LOC110524248 LOC106613729 coding downstream 351438 61637104 ~ 61655195 (+)
LOC110524251 LOC106613732 coding downstream 500781 61786447 ~ 61793643 (+)
gatad2ab NA coding downstream 523216 61808882 ~ 61840823 (+)
yjefn3 yjefn3 coding downstream 558350 61844016 ~ 62001312 (+)
G422978 NA non-coding upstream 75750 61161197 ~ 61191465 (+)
G422951 NA non-coding upstream 160273 61106216 ~ 61106942 (+)
G422886 NA non-coding upstream 252269 61013149 ~ 61014946 (+)
G422858 NA non-coding upstream 278955 60978012 ~ 60988260 (+)
G422861 NA non-coding upstream 295031 60971957 ~ 60972184 (+)
G423541 NA non-coding downstream 4108 61289774 ~ 61290244 (+)
G423548 NA non-coding downstream 13974 61299640 ~ 61345067 (+)
G423600 NA non-coding downstream 120411 61406077 ~ 61472572 (+)
G423629 LOC106613725 non-coding downstream 157443 61443109 ~ 61443960 (+)
G423796 NA non-coding downstream 244235 61529901 ~ 61530115 (+)
G420634 NA other upstream 2322998 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 2850439 58411240 ~ 58418268 (+)
G419452 NA other upstream 3367567 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 3899878 57352343 ~ 57367627 (+)
G423922 NA other downstream 435871 61721537 ~ 61722024 (+)
G424079 NA other downstream 819857 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 997486 62283054 ~ 62327772 (+)
G425224 NA other downstream 1759424 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 2390748 63676409 ~ 63684848 (+)

Expression


Co-expression Network